Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

Microorganisms living inside plants can promote plant growth and health, but their genomic and functional diversity remain largely elusive. Here, metagenomics and network inference show that fungal infection of plant roots enriched for Chitinophagaceae and Flavobacteriaceae in the root endosphere and for chitinase genes and various unknown biosynthetic gene clusters encoding the production of nonribosomal peptide synthetases (NRPSs) and polyketide synthases (PKSs). After strain-level genome reconstruction, a consortium of Chitinophaga and Flavobacterium was designed that consistently suppressed fungal root disease. Site-directed mutagenesis then revealed that a previously unidentified NRPS-PKS gene cluster from Flavobacterium was essential for disease suppression by the endophytic consortium. Our results highlight that endophytic root microbiomes harbor a wealth of as yet unknown functional traits that, in concert, can protect the plant inside out.Microbial Biotechnolog

Looking forward through the past: identification of 50 priority research questions in palaeoecology

1. Priority question exercises are becoming an increasingly common tool to frame future agendas in conservation and ecological science. They are an effective way to identify research foci that advance the field and that also have high policy and conservation relevance. 2. To date, there has been no coherent synthesis of key questions and priority research areas for palaeoecology, which combines biological, geochemical and molecular techniques in order to reconstruct past ecological and environmental systems on time-scales from decades to millions of years. 3. We adapted a well-established methodology to identify 50 priority research questions in palaeoecology. Using a set of criteria designed to identify realistic and achievable research goals, we selected questions from a pool submitted by the international palaeoecology research community and relevant policy practitioners. 4. The integration of online participation, both before and during the workshop, increased international engagement in question selection. 5. The questions selected are structured around six themes: human–environment interactions in the Anthropocene; biodiversity, conservation and novel ecosystems; biodiversity over long time-scales; ecosystem processes and biogeochemical cycling; comparing, combining and synthesizing information from multiple records; and new developments in palaeoecology. 6. Future opportunities in palaeoecology are related to improved incorporation of uncertainty into reconstructions, an enhanced understanding of ecological and evolutionary dynamics and processes and the continued application of long-term data for better-informed landscape management

Population structure and somatic indexes of Hypostomus cf. ancistroides (Siluriformes, Loricariidae) collected from the Bonito river, Ivaí river basin, Turvo, Paraná

This study aimed to provide information about the population structure and somatic index of Hypostomus cf. ancistroides collected from the Bonito river, located in the Ivaí river basin. The length-weight relationship was isometric for both the sexes. The length structure analysis showed that the larger individuals (from 18.1cm to 27.0cm in length) predominated, and the lowest abundances occurred at the size extremes (9.1-12cm and 27.1-30.0cm). The reproduction period occured between October and January for the females and between November and January for the males. The liver somatic index cannot be used as an indicator of the reproduction period in either of the sexes, due to no correlation between the liver somatic index and the gonad somatic index. The gonad weight exerted no influence on the monthly mean condition factor and the correlation between the condition factor and gonad somatic index was high. The condition factor could be an indicator of the reproduction period of this species.<br>Este estudo teve o objetivo de fornecer informações sobre a estrutura populacional e os índices somáticos de Hipostomus cf. ancistroides coletados no rio Bonito localizado na bacia do rio Ivaí. A relação comprimento-peso, para machos e para fêmeas, foi isométrica. A análise da estrutura em comprimento mostrou que há um predomínio de indivíduos maiores (entre 18.1 a 27.0 cm) sendo que as menores abundâncias ocorreram nas classes de comprimentos extremas (9.1 a 12.0 cm e 27.1 a 30.0 cm). O período reprodutivo em fêmeas ocorreu entre os meses de outubro a janeiro. Os machos possuem um período reprodutivo entre novembro e janeiro. O índice hepatossomático, para ambos os sexos, não pode ser utilizado como indicador do período reprodutivo, devido à não correlação entre o índice hepatossomático e o índice gonadossomático. O peso das gônadas não influenciou o valor médio do fator de condição e foi observada uma alta correlação entre o fator de condição e o índice gonadossomático. O fator de condição pode ser um indicador do período de reprodução desta espécie