Gene regulation in climacteric fruit ripening

[EN] Seed dispersion and consequent plant propagation depend on the success of fruit ripening. Thus, ripening is a highly regulated developmental process aiming to maximize fruit organoleptic traits to attract herbivores. During ripening, the developing fruit experiences dramatic modifications, including color change, flavor improvement, and loss of firmness that are remarkably coordinated. Dynamic interactions between multiple hormones, transcription factors, and epigenetic modifications establish the complex regulatory network that controls the expression levels of ripening-related genes. Tomato, as a climacteric fruit, displays a burst of respiration once the seeds mature, followed by an increase in ethylene that regulates ripening. The accepted paradigm of the ripening transcriptional regulation has been recently challenged by the generation of true-null mutants of the previously considered master regulators of ripening. In addition to hormonal and transcriptional control, epigenetic shifts regulate the ripening process. Future research will contribute to better understanding the factors regulating fruit ripening.I would like to thank Kristina Karrass and the members of the Hormone Signaling and Plasticity Lab at IBMCP (http://plasticity.ibmcp.csic.es) for useful discussions and suggestions. Research in our group is supported by a Ramo¿n y Cajal Fellowship RYC-2019-026537-I.Brumos, J. (2021). Gene regulation in climacteric fruit ripening. Current Opinion in Plant Biology. 63:1-9. https://doi.org/10.1016/j.pbi.2021.102042196

Creación de material multimedia : CAM para piezas de revolución

El objeto de este proyecto es que los estudiantes de la asignatura de Fabricación Integrada por Ordenador y Automatización de la Producción conozcan lo que es el CAD/CAM y la programación directa en CNC

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

SummaryThe central role of translation in modulating gene activity has long been recognized, yet the systematic exploration of quantitative changes in translation at a genome-wide scale in response to a specific stimulus has only recently become technically feasible. Using the well-characterized signaling pathway of the phytohormone ethylene and plant-optimized genome-wide ribosome footprinting, we have uncovered a molecular mechanism linking this hormone’s perception to the activation of a gene-specific translational control mechanism. Characterization of one of the targets of this translation regulatory machinery, the ethylene signaling component EBF2, indicates that the signaling molecule EIN2 and the nonsense-mediated decay proteins UPFs play a central role in this ethylene-induced translational response. Furthermore, the 3′UTR of EBF2 is sufficient to confer translational regulation and required for the proper activation of ethylene responses. These findings represent a mechanistic paradigm of gene-specific regulation of translation in response to a key growth regulator

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance

BACKGROUND: Improvement of Citrus, the most economically important fruit crop in the world, is extremely slow and inherently costly because of the long-term nature of tree breeding and an unusual combination of reproductive characteristics. Aside from disease resistance, major commercial traits in Citrus are improved fruit quality, higher yield and tolerance to environmental stresses, especially salinity. RESULTS: A normalized full length and 9 standard cDNA libraries were generated, representing particular treatments and tissues from selected varieties (Citrus clementina and C. sinensis) and rootstocks (C. reshni, and C. sinenis × Poncirus trifoliata) differing in fruit quality, resistance to abscission, and tolerance to salinity. The goal of this work was to provide a large expressed sequence tag (EST) collection enriched with transcripts related to these well appreciated agronomical traits. Towards this end, more than 54000 ESTs derived from these libraries were analyzed and annotated. Assembly of 52626 useful sequences generated 15664 putative transcription units distributed in 7120 contigs, and 8544 singletons. BLAST annotation produced significant hits for more than 80% of the hypothetical transcription units and suggested that 647 of these might be Citrus specific unigenes. The unigene set, composed of ~13000 putative different transcripts, including more than 5000 novel Citrus genes, was assigned with putative functions based on similarity, GO annotations and protein domains CONCLUSION: Comparative genomics with Arabidopsis revealed the presence of putative conserved orthologs and single copy genes in Citrus and also the occurrence of both gene duplication events and increased number of genes for specific pathways. In addition, phylogenetic analysis performed on the ammonium transporter family and glycosyl transferase family 20 suggested the existence of Citrus paralogs. Analysis of the Citrus gene space showed that the most important metabolic pathways known to affect fruit quality were represented in the unigene set. Overall, the similarity analyses indicated that the sequences of the genes belonging to these varieties and rootstocks were essentially identical, suggesting that the differential behaviour of these species cannot be attributed to major sequence divergences. This Citrus EST assembly contributes both crucial information to discover genes of agronomical interest and tools for genetic and genomic analyses, such as the development of new markers and microarrays

Acta Horticulturae

While the molecular response of model plants to salt stress in the short-medium term (hours-days) has been broadly studied, the knowledge about the nature of genes involved in maintaining homeostatic conditions in the long term (months-years) in woody perennial trees has not been addressed yet. We have analyzed physiological parameters and the transcriptome profiles of photosynthetically active leaves from citrus trees acclimatized to moderate salinity (NaCl 30 mM) after 2 years treatment. Through functional genomics, global gene expression in response to NaCl treatment in mature (8 months-old) and young (2 months-old) leaves has been analyzed and compared. Although young leaves (YL) accumulated low levels of chloride (0.51%+/- 0.06), they exhibited a much stronger response to salinity in term of the number of differentially expressed genes (1,211 genes) compared with mature leaves (ML), which accumulated higher chloride levels (1.05%+/- 0.01), and exhibited a much lower number of differentially-responsive genes (100 genes). In this work, a number of responses have been observed that differ from those described in previous studies of citrus plants non-acclimatized to salt stress (Brumos et al., 2009), whose principal manifestation was the lack of repression of primary metabolism in leaves at the molecular and physiological levels. Results describing enriched functional categories of differentially expressed genes are presented and discussed highlighting how the long-term acclimation to NaCl stress involves drastically different molecular strategies depending on the developmental stage of plant leaves

Vision, challenges and opportunities for a Plant Cell Atlas

With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them.</jats:p

Identification of MeC3HDZ1/MeCNA as a potential regulator of cassava storage root development

[EN] The storage root (SR) of cassava is the main staple food in sub-Saharan Africa, where it feeds over 500 million people. However, little is known about the genetic and molecular regulation underlying its development. Unraveling such regulation would pave the way for biotechnology approaches aimed at enhancing cassava productivity. Anatomical studies indicate that SR development relies on the massive accumulation of xylem parenchyma, a cell-type derived from the vascular cambium. The C3HDZ family of transcription factors regulate cambial cells proliferation and xylem differentiation in Arabidopsis and other species. We thus aimed at identifying C3HDZ proteins in cassava and determining whether any of them shows preferential activity in the SR cambium and/or xylem. Using phylogeny and synteny studies, we identified eight C3HDZ proteins in cassava, namely MeCH3DZ1-8. We observed that MeC3HDZ1 is the MeC3HDZ gene displaying the highest expression in SR and that, within that organ, the gene also shows high expression in cambium and xylem. In-silico analyses revealed the existence of a number of potential C3HDZ targets displaying significant preferential expression in the SR. Subsequent Y1H analyses proved that MeC3HDZ1 can bind canonical C3HDZ binding sites, present in the promoters of these targets. Transactivation assays demonstrated that MeC3HDZ1 can regulate the expression of genes downstream of promoters harboring such binding sites, thereby demonstrating that MeC3HDZ1 has C3HDZ transcription factor activity. We conclude that MeC3HDZ1 may be a key factor for the regulation of storage root development in cassava, holding thus great promise for future biotechnology applications.This work was funded by grants from the Spanish Ministry of Science (PID2019-108084RB-I00 and PID2021-125829OB-I00 to JA and PID2021-1274610B-I00 to JB) . JB is sponsored by a Ramon y Cajal contract (RYC2019-026537-I) .Solé-Gil, A.; López, A.; Ombrosi, D.; Urbez Lagunas, C.; Brumos, J.; Agustí, J. (2024). Identification of MeC3HDZ1/MeCNA as a potential regulator of cassava storage root development. Plant Science. 339. https://doi.org/10.1016/j.plantsci.2023.11193833

Transgenic Betula pendula expressing sugar beet chitinase IV forms normal ectomycorrhizae with Paxillus involutus in vitro

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