The Future of Civil War History

In March 2013, hundreds of academics, preservationists, consultants, historical interpreters, museum professionals, living historians, students, K-12 teachers, and new media specialists gathered in Gettysburg, Pennsylvania to assess the state and potential future of the study of the American Civil War. The essays in this special issue build on the themes of that conference: embracing the democratic and civic potential of historical thinking; reaffirming the power of place and the importance of specific, focused stories; integrating military, political, social, cultural, and gender history; and encouraging collaboration among historians working in different settings. Our three guest editors offer their own thoughts about the state and potential future of Civil War history. [excerpt

Briefer Communications: Consumer's Surplus

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"Making a considerable tumult in the streets"

"This thesis examines the construction of knowledge and identity revealed through the perspectives and acts of the participants in, opponents to, and observers of the North Carolina Regulation. By so doing, this work penetrates the elusive worldviews and mindsets of eighteenth-century colonists, especially those living in the North Carolina backcountry. Documentary sources--including heretofore-neglected newspapers--serve as the foundational source material; a consideration of townscapes and landscapes is included also to illustrate their roles in the Regulation. Through this inquiry my thesis examines broadly the cultural mechanisms used by Regulators to construct and propel their protest against tyranny and corruption; intertwined with these issues are matters of representation and exchanges of power in this complex agrarian protest. Such a focus is designed to expand upon the existing literature on this subject, which generally examines the causes and roots of this struggle. "--Abstract from author supplied metadata

High Temperature Electron Localization in dense He Gas

We report new accurate mesasurements of the mobility of excess electrons in high density Helium gas in extended ranges of temperature $[(26\leq T\leq 77) K ]$ and density $[ (0.05\leq N\leq 12.0) {atoms} \cdot {nm}^{-3}]$ to ascertain the effect of temperature on the formation and dynamics of localized electron states. The main result of the experiment is that the formation of localized states essentially depends on the relative balance of fluid dilation energy, repulsive electron-atom interaction energy, and thermal energy. As a consequence, the onset of localization depends on the medium disorder through gas temperature and density. It appears that the transition from delocalized to localized states shifts to larger densities as the temperature is increased. This behavior can be understood in terms of a simple model of electron self-trapping in a spherically symmetric square well.Comment: 23 pages, 13 figure

MOPED: Model Organism Protein Expression Database

Large numbers of mass spectrometry proteomics studies are being conducted to understand all types of biological processes. The size and complexity of proteomics data hinders efforts to easily share, integrate, query and compare the studies. The Model Organism Protein Expression Database (MOPED, htttp://moped.proteinspire.org) is a new and expanding proteomics resource that enables rapid browsing of protein expression information from publicly available studies on humans and model organisms. MOPED is designed to simplify the comparison and sharing of proteomics data for the greater research community. MOPED uniquely provides protein level expression data, meta-analysis capabilities and quantitative data from standardized analysis. Data can be queried for specific proteins, browsed based on organism, tissue, localization and condition and sorted by false discovery rate and expression. MOPED empowers users to visualize their own expression data and compare it with existing studies. Further, MOPED links to various protein and pathway databases, including GeneCards, Entrez, UniProt, KEGG and Reactome. The current version of MOPED contains over 43 000 proteins with at least one spectral match and more than 11 million high certainty spectra

Genomic Signatures of Strain Selection and Enhancement in Bacillus atrophaeus var. globigii, a Historical Biowarfare Simulant

(BG) as a simulant for biological warfare (BW) agents, knowledge of its genome composition is limited. Furthermore, the ability to differentiate signatures of deliberate adaptation and selection from natural variation is lacking for most bacterial agents. We characterized a lineage of BGwith a long history of use as a simulant for BW operations, focusing on classical bacteriological markers, metabolic profiling and whole-genome shotgun sequencing (WGS). on the nucleotide level. WGS of variants revealed that several strains were mixed but highly related populations and uncovered a progressive accumulation of mutations among the “military” isolates. Metabolic profiling and microscopic examination of bacterial cultures revealed enhanced growth of “military” isolates on lactate-containing media, and showed that the “military” strains exhibited a hypersporulating phenotype.Our analysis revealed the genomic and phenotypic signatures of strain adaptation and deliberate selection for traits that were desirable in a simulant organism. Together, these results demonstrate the power of whole-genome and modern systems-level approaches to characterize microbial lineages to develop and validate forensic markers for strain discrimination and reveal signatures of deliberate adaptation

Comparative Genomics of 2009 Seasonal Plague (Yersinia pestis) in New Mexico

Plague disease caused by the Gram-negative bacterium Yersinia pestis routinely affects animals and occasionally humans, in the western United States. The strains native to the North American continent are thought to be derived from a single introduction in the late 19th century. The degree to which these isolates have diverged genetically since their introduction is not clear, and new genomic markers to assay the diversity of North American plague are highly desired. To assay genetic diversity of plague isolates within confined geographic areas, draft genome sequences were generated by 454 pyrosequencing from nine environmental and clinical plague isolates. In silico assemblies of Variable Number Tandem Repeat (VNTR) loci were compared to laboratory-generated profiles for seven markers. High-confidence SNPs and small Insertion/Deletions (Indels) were compared to previously sequenced Y. pestis isolates. The resulting panel of mutations allowed clustering of the strains and tracing of the most likely evolutionary trajectory of the plague strains. The sequences also allowed the identification of new putative SNPs that differentiate the 2009 isolates from previously sequenced plague strains and from each other. In addition, new insertion points for the abundant insertion sequences (IS) of Y. pestis are present that allow additional discrimination of strains; several of these new insertions potentially inactivate genes implicated in virulence. These sequences enable whole-genome phylogenetic analysis and allow the unbiased comparison of closely related isolates of a genetically monomorphic pathogen

Physical and chemical limnological study of an acid mine lake in Sullivan County, Indiana

Southwestern Indiana has numerous lakes developed in abandoned coal mine spoils which support recreational sports fisheries. Some lakes, due to exposure to acid mine drainage from coal wastes and pyritic spoils, are unsuitable habitats for fisheries development. This study examines a publicly owned acid mine lake with an area of approximately 51 ha, following reclamation and elimination of acid producing areas in its drainage basin. Fifteen physico-chemical sample collections were made over a thirteen month period (1991-1992). Parameters sampled included pH, total acidity, iron, manganese, and aluminum. Comparisons were made to historic pre-reclamation water quality data and to established models of acid mine lake recovery. Due to the local topography and exposure to prevailing winds, the lake was generally well mixed throughout the study. Virtually no summer stratification was found, but typical winter season stratification occurred. The water column was well oxygenated throughout the study. Secchi disk transparency varied from 2.5 m to clear to lake bottom (6 m). This study found no significant change in lake water pH (2.9-3.0 to 3.0-3.2 s.u.) since reclamation activities in 1988. However, changes in total acidity and total metal concentrations had occurred since reclamation which suggested that the lake was in early recovery stages. No trends in water quality improvement were determined which could assist in planning toward the eventual establishment of a sports fishery.Thesis (D. Ed.)Department of Biolog