Introducing Pollenyzer: An app for automatic determination of colour diversity for corbicular pollen loads

Pollen is known to be the only source of proteins and fats for honey bees. Therefore, it is an important component of nutrition, essential for brood care and a good indicator for the availability of resources in a landscape. It is also known that a diverse diet is beneficial for bee health, also in relation to winter losses. In this work, an app is presented that allows to quantify the pollen from a pollen trap and to determine its colour diversity in an automatic way. The colour diversity is closely related to the actual plant diversity. This correlation allows conclusions to be drawn on the apicultural importance of a landscape and on biodiversity in general. In this way, the app provides beekeepers with important information about the nutritional condition of their colonies, while scientists can benefit from aggregated information about local biodiversity. The app is free of use and available as a web app on all devices

STTS 2.0. Guidelines für die Annotation von POS -Tags für Transkripte gesprochener Sprache in Anlehnung an das Stuttgart Tübingen Tagset (STTS)

Die Guidelines sind eine Erweiterung des STTS (Schiller et al. 1999) für die Annotation von Transkripten gesprochener Sprache. Dieses Tagset basiert auf der Annotation des FOLK-Korpus des IDS Mannheim (Schmidt 2014) und es wurde gegenüber dem STTS erweitert in Hinblick auf typisch gesprochensprachliche Phänomene bzw. Eigenheiten der Transkription derselben. Es entstand im Rahmen des Dissertationsprojekts „POS für(s) FOLK – Entwicklung eines automatisierten Part-of-Speech-Tagging von spontansprachlichen Daten“ (Westpfahl 2017 (i.V.))

Synthesis of N-heterocycles from diamines via H2-driven NADPH recycling in the presence of O2

Herein, we report an enzymatic cascade involving an oxidase, an imine reductase and a hydrogenase for the H2-driven synthesis of N-heterocycles. Variants of putrescine oxidase from Rhodococcus erythropolis with improved activity were identified. Substituted pyrrolidines and piperidines were obtained with up to 97% product formation in a one-pot reaction directly from the corresponding diamine substrates. The formation of up to 93% ee gave insights into the specificity and selectivity of the putrescine oxidase.DFG, 53182490, EXC 314: Unifying Concepts in CatalysisDFG, 284111627, H2-basierende Kaskaden für die Biosynthese von N-HeterocyclenTU Berlin, Open-Access-Mittel - 201

Bericht zur Tagung der Deutschen Gesellschaft für Völkerkunde 30.09.2015 - 03.10.2015 in Marburg

Reflexion und Eindrücke zur DGV-Tagung. Tagungsthema: Krisen. Re-Formationen von Leben, Macht und Wel

Bericht zur Tagung der Deutschen Gesellschaft für Völkerkunde 30.09.2015 - 03.10.2015 in Marburg

Reflexion und Eindrücke zur DGV-Tagung. Tagungsthema: Krisen; Re-Formationen von Leben, Macht und Wel

Inverting the stereoselectivity of an NADH-dependent imine reductase variant

Imine reductases (IREDs) offer biocatalytic routes to chiral amines and have a natural preference for the NADPH cofactor. In previous work, we reported enzyme engineering of the (R)-selective IRED from Myxococcus stipitatus (NADH-IRED-Ms) yielding a NADH-dependent variant with high catalytic efficiency. However, no IRED with NADH specificity and (S)-selectivity in asymmetric reductions has yet been reported. Herein, we applied semi-rational enzyme engineering to switch the selectivity of NADH-IRED-Ms. The quintuple variant A241V/H242Y/N243D/V244Y/A245L showed reverse stereopreference in the reduction of the cyclic imine 2- methylpyrroline compared to the wild-type and afforded the (S)- amine product with >99% conversion and 91% enantiomeric excess. We also report the crystal-structures of the NADPH-dependent (R)- IRED-Ms wild-type enzyme and the NADH-dependent NADH-IREDMs variant and molecular dynamics (MD) simulations to rationalize the inverted stereoselectivity of the quintuple variant

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Funder: Bundesministerium für Bildung und ForschungFunder: Bundesministerium für Bildung und Forschung (BMBF)We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS-CoV-2 infection, improving data interpretation and predicting key targets of intervention. Here, we describe a large-scale community effort to build an open access, interoperable and computable repository of COVID-19 molecular mechanisms. The COVID-19 Disease Map (C19DMap) is a graphical, interactive representation of disease-relevant molecular mechanisms linking many knowledge sources. Notably, it is a computational resource for graph-based analyses and disease modelling. To this end, we established a framework of tools, platforms and guidelines necessary for a multifaceted community of biocurators, domain experts, bioinformaticians and computational biologists. The diagrams of the C19DMap, curated from the literature, are integrated with relevant interaction and text mining databases. We demonstrate the application of network analysis and modelling approaches by concrete examples to highlight new testable hypotheses. This framework helps to find signatures of SARS-CoV-2 predisposition, treatment response or prioritisation of drug candidates. Such an approach may help deal with new waves of COVID-19 or similar pandemics in the long-term perspective

Garlic Revisited: Antimicrobial Activity of Allicin-Containing Garlic Extracts against Burkholderia cepacia Complex

The antimicrobial activities of garlic and other plant alliums are primarily based on allicin, a thiosulphinate present in crushed garlic bulbs. We set out to determine if pure allicin and aqueous garlic extracts (AGE) exhibit antimicrobial properties against the Burkholderia cepacia complex (Bcc), the major bacterial phytopathogen for alliums and an intrinsically multiresistant and life-threatening human pathogen. We prepared an AGE from commercial garlic bulbs and used HPLC to quantify the amount of allicin therein using an aqueous allicin standard (AAS). Initially we determined the minimum inhibitory concentrations (MICs) of the AGE against 38 Bcc isolates; these MICs ranged from 0.5 to 3% (v/v). The antimicrobial activity of pure allicin (AAS) was confirmed by MIC and minimum bactericidal concentration (MBC) assays against a smaller panel of five Bcc isolates; these included three representative strains of the most clinically important species, B. cenocepacia. Time kill assays, in the presence of ten times MIC, showed that the bactericidal activity of AGE and AAS against B. cenocepacia C6433 correlated with the concentration of allicin. We also used protein mass spectrometry analysis to begin to investigate the possible molecular mechanisms of allicin with a recombinant form of a thiol-dependent peroxiredoxin (BCP, Prx) from B. cenocepacia. This revealed that AAS and AGE modifies an essential BCP catalytic cysteine residue and suggests a role for allicin as a general electrophilic reagent that targets protein thiols. To our knowledge, we report the first evidence that allicin and allicin-containing garlic extracts possess inhibitory and bactericidal activities against the Bcc. Present therapeutic options against these life-threatening pathogens are limited; thus, allicin-containing compounds merit investigation as adjuncts to existing antibiotics