Carex guyana SNP dataset, Andean wetland plant community dataset, and environmental data for species genetic diversity correlation study

This data folder includes the five filtered SNP datasets for the plant species, Carex guyana, a common sedge in high elevation Andes wetlands (final_partitioned_SNPdatasets). Details regading the partitioned neutral and adaptive datasets can be found in the accompanying Ecology and Evolution 2018 paper. The folder also contains the plant community datasets (DatosPlantsCommunity_modified) used to contrast plant species and Carex guyana genetic diversity in the species genetic diversity correlation study, as well as the environmental data (EnvData)

A three-year mark-recapture study in a remnant population of Crocodylus acutus Cuvier in Portete Bay (Guajira, Colombia) Estudio de captura-recaptura en una población remanente de Crocodylus acutus Cuvier en Bahía Portete (Guajira, Colombia)

The American crocodile, Crocodylus acutus, has experienced important population declines worldwide due to human persecution, overexploitation and habitat loss. C. acutus remains critically endangered in some countries such as Colombia where the lack of detailed surveys on its ecology and distribution constitutes a major barrier to the development of effective conservation strategies. We conducted a three-year capture-recapture study to investigate the demographic status of C. acutus and to identify environmental variables likely to in uence its distribution in Portete Bay (Colombia). We estimated the crocodile population to be relatively small (< 140 animals), to include very few adults, and to demonstrate a very strong de cit in females in the juvenile class. Both mean air temperature and relative humidity were positively correlated with the number of sightings. In contrast, mean water salinity was found to decrease the probability of observing a crocodile, presumably due to juvenile preference for low salinity areas. Our findings suggest that the population of C. acutus in Portete Bay is at risk and may require human intervention to assure its persistence.<br>El Cocodrilo Americano Crocodylus acutus, ha experimentado importantes declines poblacionales a lo amplio de su distribución debido a la persecución humana, la sobreexplotación y la pérdida de hábitat. C. acutus permanece en peligro crítico en algunos países tales como Colombia donde la ausencia de estudios detallados sobre su ecología y distribución constituyen una de las barreras principales para el desarrollo de efectivas estrategias de conservación. Durante tres años desarrollamos un estudio de captura-recaptura para investigar el estatus demográfico de C. acutus e identificar las variables medioambientales más influyentes en su distribución en Bahía Portete (Colombia). Nosotros estimamos que la población de cocodrilos es relativamente pequeña (< 140 animales), incluye muy pocos adultos y demuestra un fuerte déficit de hembras en la clase juvenil. La humedad relativa y la temperatura promedio del aire estuvieron positivamente correlacionadas con el número de avistamientos de cocodrilos. Por el contrario, la salinidad promedio del agua se encontró relacionada con la baja probabilidad de observación, presumiblemente debido a la preferencia de los juveniles por áreas de baja salinidad. Nuestros resultados sugieren que la población de C. acutus en Bahía Portete está en riesgo y puede requerir la intervención humana para asegurar su persistencia

Landscape connectivity among remnant populations of guanaco (Lama guanicoe, Müller, 1776) in an arid region of Chile impacted by global change.

Connectivity between populations plays a key role in the long-term persistence of species in fragmented habitats. This is of particular concern for biodiversity preservation in drylands, since water limited landscapes are typically characterized by little suitable habitat cover, high habitat fragmentation, harsh matrices, and are being rapidly degraded at a global scale. In this study, we modelled landscape connectivity between 11 guanaco <i>Lama guanicoe </i>populations in Chile's arid Norte Chico, a region that supports the last remnant coastal populations of this emblematic herbivore indigenous to South America. We produced a habitat suitability model to derive a regional surface resistance map, and used circuit theory to map functional connectivity, investigate the relative isolation between populations, and identify those that contribute most to the patch connectivity network. Predicted suitable habitat for <i>L. guanicoe</i> represented about 25% of the study region (i.e. 29,173 km²) and was heterogeneously distributed along a continuous stretch along the Andes, and discontinuous patches along the coast. As a result, we found that high connectivity current flows in the mid and high Andes formed a wide, continuous connectivity corridor, enabling connectivity between all high Andean populations. Coastal populations, in contrast, were more isolated. These groups demonstrate no inter-population connectivity between themselves, only with higher altitude populations, and for two of them, animal movement was linked to the effectiveness of wildlife crossings along the Pan-American highway. Our results indicate that functional connectivity is an issue of concern for <i>L. guanicoe</i> in Chile’s Norte Chico, implying that future conservation and management plans should emphasize strategies aimed at conserving functional connectivity between coastal and Andean populations, as well as the protection of habitat patches likely to act as stepping stones within the connectivity network.<br> <br>The raw material it is composed of three folders:<br> <br>1. Maxent_products folder contains the main results and analysis of Maxent model results plus ocurrences data used for modelling.<b><br></b>2. ResistanceSurf folder: this folder show the final landscape resistance used to build the connectivity model by using Circuitscape program. <br>3. Circuitscape matrix folder: contains the resistance matrix generated by circuitscape as from logistic output of maxent model.<br><br>This study has been sumitted to PeerJ journal.<br

Data from: Partitioning genetic and species diversity refines our understanding of species-genetic diversity relationships

Illuminating the origin of species-genetic diversity correlations (SGDCs) is a challenging task that has sparked a lot of interest. Genetic and species diversity are comprised by components that respond differently to the same ecological processes. Thus, it can be useful to partition species and genetic diversity into their different components to infer the mechanisms behind SGDCs. In this study, we applied such an approach using a high-elevation Andean wetland system, where previous evidence identified neutral processes as major determinants of the strong and positive covariation between plant species richness and AFLP genetic diversity of the common sedge Carex gayana. To tease apart putative neutral and non-neutral genetic variation of C. gayana, we identified loci putatively under selection from a dataset of 1709 SNPs produced using restriction site-associated DNA sequencing (RAD-seq). Significant and positive relationships between local estimates of genetic and species diversities (α-SGDCs) were only found with the putatively neutral loci datasets and with species richness, confirming that neutral processes were primarily driving the correlations and that the involved processes differentially influenced local species diversity components (i.e. richness and evenness). In contrast, SGDCs based on genetic and community dissimilarities (-SGDCs) were only significant with the putative non-neutral datasets. This suggests that selective processes influencing C. gayana genetic diversity were involved in the detected correlations. Together, our results demonstrate that analyzing distinct components of genetic and species diversity simultaneously is useful to determine the mechanisms behind species-genetic diversity relationships

Data from: Partitioning genetic and species diversity refines our understanding of species-genetic diversity relationships

Illuminating the origin of species-genetic diversity correlations (SGDCs) is a challenging task that has sparked a lot of interest. Genetic and species diversity are comprised by components that respond differently to the same ecological processes. Thus, it can be useful to partition species and genetic diversity into their different components to infer the mechanisms behind SGDCs. In this study, we applied such an approach using a high-elevation Andean wetland system, where previous evidence identified neutral processes as major determinants of the strong and positive covariation between plant species richness and AFLP genetic diversity of the common sedge Carex gayana. To tease apart putative neutral and non-neutral genetic variation of C. gayana, we identified loci putatively under selection from a dataset of 1709 SNPs produced using restriction site-associated DNA sequencing (RAD-seq). Significant and positive relationships between local estimates of genetic and species diversities (α-SGDCs) were only found with the putatively neutral loci datasets and with species richness, confirming that neutral processes were primarily driving the correlations and that the involved processes differentially influenced local species diversity components (i.e. richness and evenness). In contrast, SGDCs based on genetic and community dissimilarities (-SGDCs) were only significant with the putative non-neutral datasets. This suggests that selective processes influencing C. gayana genetic diversity were involved in the detected correlations. Together, our results demonstrate that analyzing distinct components of genetic and species diversity simultaneously is useful to determine the mechanisms behind species-genetic diversity relationships

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 February 2011–31 March 2011

This article documents the addition of 111 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Acipenser oxyrinchus desotoi, Anopheles nuneztovari sensu lato, Asellus aquaticus, Calopteryx splendens, Calopteryx virgo, Centaurea aspera, Centaurea seridis, Chilina dombeyana, Proctoeces cf. lintoni and Pyrenophora teres f. teres