Epiphytic Diatom Community Structure in a Karst Riverine System

The goal of this study was to assess the epiphytic diatom community structure of two host species along a karst gradient in the upper Green River, Kentucky to a gain a better understanding of the role of diatoms in the food web. The host species studied were Podostemum ceratophyllum and Cladophora. Percent cover of P. ceratophyllum and Cladophora were quantified in the four study reaches. The host species were sampled near-shore and mid-channel in each reach in September and October of 2013. After diatoms were extracted from the host and enumerated the density and diversity were quantified. Twelve genera were identified with \u3e 91% of the community in each reach being Cocconeis. The second most abundant genus was Achnanthes or Navicula depending on the reach. The density and diversity of diatoms increased longitudinally going downstream. Exceptions to this trend occurred when high flow events disturbed the community. Within reaches there were no differences in diatom diversity in near-shore and mid-channel habitats. Diatom density in near-shore and mid-channel habitats was only different in the most downstream reach. Cladophora had a community twice as dense as P. ceratophyllum, but less diverse. The results of this study indicate that there are longitudinal differences in diatom communities in the upper Green River and host species are an important factor in determining the community composition. The importance of epiphytic diatoms in the food web, however, remains unclear

Rapid surface sampling and archival record system (RSSAR)

Purpose is to develop a rapid surface (concrete, steel) contamination measurement system that will provide a ``quick-look`` indication of contamination areas, an archival record, and an automated analysis. A bulk sampling oven is also being developed. The sampling device consists of a sampling head, a quick look detector, and an archiving system (sorbent tube). The head thermally desorbs semi-volatiles, such as PCBs, oils, etc., from concrete and steel surfaces; the volatilized materials are passed through a quick-look detector. Sensitivity of the detector can be attenuated for various contaminant levels. Volatilized materials are trapped in a tube filled with adsorbent. The tubes are housed in a magazine which also archives information about sampling conditions. Analysis of the tubes can be done at a later date. The concrete sampling head is fitted with a tungsten-halogen lamp; in laboratory experiments it has extracted model contaminants by heating the top 4mm of the surface to 250 C within 100-200 s. The steel sampling head has been tested on different types of steels and has extracted model contaminants within 30 s. A mathematical model of heat and mass transport in concrete has been developed. Rate of contaminant removal is at maximum when the moisture content is about 100 kg/m{sup 3}. The system will be useful during decontamination and decommissioning operations

Cenozoic paleoceanography 1986: An introduction

New developments in Cenozoic paleoceanography include the application of climate models and atmospheric general circulation models to questions of climate reconstruction, the refinement of conceptual models for interpretation of the carbon isotope record in terms of carbon mass balance, paleocirculation, paleoproductivity, and the regional mapping of paleoceanographic events by acoustic stratigraphy. Sea level change emerges as a master variable to which changes in the ocean environment must be traced in many cases, and tests of the onlap-offlap paradigm therefore are of crucial importance

Time-domain chirally-sensitive three-pulse coherent probes of vibrational excitons in proteins

The third order optical response of bosonic excitons is calculated using the Green's function solution of the Nonlinear Exciton Equations (NEE) which establish a quasiparticle-scattering mechanism for optical nonlinearities. Both time ordered and non ordered forms of the response function which represent time and frequency domain techniques, respectively, are derived. New components of the response tensor are predicted for isotropic ensembles of periodic chiral structures to first order in the optical wavevector. The nonlocal nonlinear response function is calculated in momentum space, where the finite exciton-exciton interaction length greatly reduces the computational effort. Applications are made to coupled anharmonic vibrations in the amide I infrared band of peptides. Chirally-sensitive and non sensitive signals for alpha helices and antiparallel beta sheets are compared.Comment: 26 pages, 6 figure

Rendering an Account: An Open-State Archive in Postgraduate Supervision

The paper begins with a brief account of the transformation of research degree studies under the pressures of global capitalism and neo-liberal governmentality. A parallel transformation is occurring in the conduct of research through the use of information and communication technologies. Yet the potential of ICTs to shape practices of surveillance or to produce new student-supervisor relations and enhance the processes of developing the dissertation has received almost no critical attention. As doctoral supervisor and student, we then describe the features and uses of a web-based open state archive of the student's work-in-progress, developed by the student and accessible to his supervisor. Our intention was to encourage more open conversations between data and theorising, student and supervisor, and ultimately between the student and professional community. However, we recognise that relations of accountability, as these have developed within a contemporary "audit revolution" (Power, 1994, 1997) in universities, create particular "lines of visibility" (Munro, 1996). Thus while the open-state archive may help to redefine in less managerial terms notions of quality, transparency, flexibility and accountability, it might also make possible greater supervisory surveillance. How should we think about the panoptical potential of this archive? We argue that the diverse kinds of interactional patterns and pedagogical intervention it encourages help to create shifting subjectivities. Moreover, the archive itself is multiple, in bringing together an array of diverse materials that can be read in various ways, by following multiple paths. It therefore constitutes a collage, which we identify as a mode of cognition and of accounting distinct from but related to argument and narrative. As a more "open" text (Iser, 1978) it has an indeterminacy which may render it less open to abuse for the technologies of managerial accountability

Palmitoylated APP Forms Dimers, Cleaved by BACE1

A major rate-limiting step for Aβ generation and deposition in Alzheimer’s disease brains is BACE1-mediated cleavage (β-cleavage) of the amyloid precursor protein (APP). We previously reported that APP undergoes palmitoylation at two cysteine residues (Cys186 and Cys187) in the E1-ectodomain. 8–10% of total APP is palmitoylated in vitro and in vivo. Palmitoylated APP (palAPP) shows greater preference for β-cleavage than total APP in detergent resistant lipid rafts. Protein palmitoylation is known to promote protein dimerization. Since dimerization of APP at its E1-ectodomain results in elevated BACE1-mediated cleavage of APP, we have now investigated whether palmitoylation of APP affects its dimerization and whether this leads to elevated β-cleavage of the protein. Here we report that over 90% of palAPP is dimerized while only ~20% of total APP forms dimers. PalAPP-dimers are predominantly cis-oriented while total APP dimerizes in both cis- and trans-orientation. PalAPP forms dimers 4.5-times more efficiently than total APP. Overexpression of the palmitoylating enzymes DHHC7 and DHHC21 that increase palAPP levels and Aβ release, also increased APP dimerization in cells. Conversely, inhibition of APP palmitoylation by pharmacological inhibitors reduced APP-dimerization in coimmunoprecipitation and FLIM/FRET assays. Finally, in vitro BACE1-activity assays demonstrate that palmitoylation-dependent dimerization of APP promotes β-cleavage of APP in lipid-rich detergent resistant cell membranes (DRMs), when compared to total APP. Most importantly, generation of sAPPβ-sAPPβ dimers is dependent on APP-palmitoylation while total sAPPβ generation is not. Since BACE1 shows preference for palAPP dimers over total APP, palAPP dimers may serve as novel targets for effective β-cleavage inhibitors of APP as opposed to BACE1 inhibitors

Thermal sampling head and system for concrete walls

We have determined that the thermal sampling approach gives more accurate results of analyte levels on concrete surfaces when compared to the standard wipe test methods. The use of a quick-look detector eliminates the need to analyze ``clean`` environmental samples. The sorption tubes have been shown to provide a reliable quantitative means for transfer of analyte to an automated thermal desorption interface to a GC. We will be extending our work to include sampling of steel surfaces in Phase II of this program. Models of the extraction process for porous surfaces such as concrete will be developed in the next phase of this program

Rapid surface sampling and archival record (RSSAR) system

Purpose is to develop a rapid surface contamination measurement system that will provide a ``quick-look`` indication of contaminated areas, an archival record, and an automated analysis of that record. By providing rapid analysis and a large number of accurate measurements of surface and subsurface contamination, the cost of remediation of large industrial sites will be dramatically lowered by reducing both characterization time and the material fraction that must be remediated. The RSSAR system is capable of sampling a variety of surfaces for semivolatile organic contaminants. The sampling is rapid (one sample per 100 sec). The system comprises thermal sampler heads, a ``quick-look`` module, and archival multisample trapping module