33 research outputs found

    Identification of Candidate Growth Promoting Genes in Ovarian Cancer through Integrated Copy Number and Expression Analysis

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    Ovarian cancer is a disease characterised by complex genomic rearrangements but the majority of the genes that are the target of these alterations remain unidentified. Cataloguing these target genes will provide useful insights into the disease etiology and may provide an opportunity to develop novel diagnostic and therapeutic interventions. High resolution genome wide copy number and matching expression data from 68 primary epithelial ovarian carcinomas of various histotypes was integrated to identify genes in regions of most frequent amplification with the strongest correlation with expression and copy number. Regions on chromosomes 3, 7, 8, and 20 were most frequently increased in copy number (>40% of samples). Within these regions, 703/1370 (51%) unique gene expression probesets were differentially expressed when samples with gain were compared to samples without gain. 30% of these differentially expressed probesets also showed a strong positive correlation (r≥0.6) between expression and copy number. We also identified 21 regions of high amplitude copy number gain, in which 32 known protein coding genes showed a strong positive correlation between expression and copy number. Overall, our data validates previously known ovarian cancer genes, such as ERBB2, and also identified novel potential drivers such as MYNN, PUF60 and TPX2

    A shared role for RBF1 and dCAP-D3 in the regulation of transcription with consequences for innate immunity

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    Previously, we discovered a conserved interaction between RB proteins and the Condensin II protein CAP-D3 that is important for ensuring uniform chromatin condensation during mitotic prophase. The Drosophila melanogaster homologs RBF1 and dCAP-D3 co-localize on non-dividing polytene chromatin, suggesting the existence of a shared, non-mitotic role for these two proteins. Here, we show that the absence of RBF1 and dCAP-D3 alters the expression of many of the same genes in larvae and adult flies. Strikingly, most of the genes affected by the loss of RBF1 and dCAP-D3 are not classic cell cycle genes but are developmentally regulated genes with tissue-specific functions and these genes tend to be located in gene clusters. Our data reveal that RBF1 and dCAP-D3 are needed in fat body cells to activate transcription of clusters of antimicrobial peptide (AMP) genes. AMPs are important for innate immunity, and loss of either dCAP-D3 or RBF1 regulation results in a decrease in the ability to clear bacteria. Interestingly, in the adult fat body, RBF1 and dCAP-D3 bind to regions flanking an AMP gene cluster both prior to and following bacterial infection. These results describe a novel, non-mitotic role for the RBF1 and dCAP-D3 proteins in activation of the Drosophila immune system and suggest dCAP-D3 has an important role at specific subsets of RBF1-dependent genes

    Advances in Social Media Research:Past, Present and Future

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    Social media comprises communication websites that facilitate relationship forming between users from diverse backgrounds, resulting in a rich social structure. User generated content encourages inquiry and decision-making. Given the relevance of social media to various stakeholders, it has received significant attention from researchers of various fields, including information systems. There exists no comprehensive review that integrates and synthesises the findings of literature on social media. This study discusses the findings of 132 papers (in selected IS journals) on social media and social networking published between 1997 and 2017. Most papers reviewed here examine the behavioural side of social media, investigate the aspect of reviews and recommendations, and study its integration for organizational purposes. Furthermore, many studies have investigated the viability of online communities/social media as a marketing medium, while others have explored various aspects of social media, including the risks associated with its use, the value that it creates, and the negative stigma attached to it within workplaces. The use of social media for information sharing during critical events as well as for seeking and/or rendering help has also been investigated in prior research. Other contexts include political and public administration, and the comparison between traditional and social media. Overall, our study identifies multiple emergent themes in the existing corpus, thereby furthering our understanding of advances in social media research. The integrated view of the extant literature that our study presents can help avoid duplication by future researchers, whilst offering fruitful lines of enquiry to help shape research for this emerging field

    Delamination dynamics in through-thickness reinforced laminates with application to DCB specimen

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    Bridged crack models using beam theory formulations have proved to be effective in modeling quasistatic delamination crack growth under large scale bridging conditions in through-thickness reinforced structures. In this paper, beam theory is used to study dynamic mode I crack propagation in through-thickness reinforced laminar structures. In particular, steady state dynamic crack growth for a Double Cantilever Beam (DCB) loaded with a flying wedge is examined. The steady state crack propagation characteristics are mapped out in terms of controllable loading and material parameters including the crack velocity and the properties of the throughthickness reinforcement. For small crack velocities, the through-thickness reinforcement considerably enhances the delamination resistance of the structure. At higher velocities, the kinetic energy term dominates the overall energetics and the relative effect of the reinforcement on the delamination resistance is insignificant. The model suggests a simple fracture test for estimating the properties of the through-thickness reinforcement under dynamic loading conditions

    Physicochemical, preliminary phytochemical and powder microscopical studies of “M-Swadishta virechana churna†–An Ayurvedic poly herbal formulation

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    Ayurvedic formulation M-Swadista virechana churna is known to be an effective laxative in diseases like Arsha (heamorrhoids), Amasangraha (accumulation of Ama-undigested toxic substance) and Vibandha (constipation). Literature reviews revealed that there are no reports available on the physicochemical standardization & Powder microscopy of   “M-Swadishta virechana churna. Hence, analytical studies have been taken up to derive the Pharmacopoeial standards for quality control. The ayurvedic compound formulation, M-Swadishta virechana churna contains Swarnapatri (Cassia angustifolia), Madhuka (Glycerrhiza glabra) and Ikshu Sarkara (cane sugar- Saccharam officinarum). The present communication deals with the physico chemical, preliminary phyto chemical and chromatographic with powder microscopical studies gave valuable parameters for laying down Pharmacopoeial standards of the compound formulation

    Adherence to standard precaution in the peripheral vascular access Siguiendo las precauciones padrón para procedimiento de inserción vascular periférico Adesão às precauções padrão no acesso vascular periférico

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    This prospective and quantitative study was carried out in a small private general hospital, where the adherence to standard precaution in the peripheral vascular access was evaluated. The data were collected through a questionnaire aiming to characterize the nursing team's knowledge and opinion about standard precautions and the availability of materials. In addition, a systemized observation of the procedures of vein puncture and medicine administration was performed. It was identified that 84.4% of the punctures had been carried out without gloves or previous hand washing; in 29.7% of the procedures, needles were recapped and 93.2% of the professionals reported adequate material supply. Concluding, the professionals expose themselves and patients to unnecessary risks of infection. The nursing team must be the focus of continuous interventions and future actions in order to minimize the risk of infection in the procedure of peripheral vascular access.<br>Estudio prospectivo, cuantitativo, realizado en un hospital general privado de poca complejidad, donde fue evaluado el seguimiento de las precauciones patrón para realizar inserción vascular periférica. Los datos fueron recolectados por medio de un cuestionario, con el objetivo de determinar las características del conocimiento y de opinión del equipo de enfermería sobre los temas de adhesión, precauciones patrón, disponibilidad de materiales; y por observación sistémica de los procedimientos de punción venosa y administración de medicamentos. Se identificó que 84,4% de las punciones fueron realizadas sin guantes y sin lavado previo de manos, 29,7% de las veces hubo reutilización de agujas y 93,2% de los profesionales afirmó tener una adecuada cantidad de materiales. Se concluyó que los profesionales exponen a sus pacientes y a sí mismos a riesgos de infección innecesaria. El equipo de enfermería debe enfocar su intervención y actividades futuras con el objetivo de minimizar el riesgo de infección durante el procedimiento vascular periférico.<br>Estudo prospectivo, quantitativo, realizado num hospital geral privado de pequeno porte, onde foi avaliada a adesão às precauções padrão no acesso vascular periférico. Os dados foram coletados por meio de questionário, visando a caracterização do conhecimento e da opinião da equipe de enfermagem sobre os temas adesão às precauções padrão e a disponibilidade de materiais e por observação sistematizada dos procedimentos de punção venosa e administração de medicamentos. Identificou-se que 84,4% das punções foram realizadas sem luvas e sem lavagem prévia das mãos 29,7% das vezes houve reencape de agulhas e 93,2% dos profissionais afirmou ser adequada a oferta de material. Conclui-se que os profissionais expõem a si próprios e os pacientes a riscos de infecção desnecessários. A equipe de enfermagem deve ser foco de intervenção e ações futuras visando minimizar o risco de infecção no procedimento de acesso vascular periférico
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