PDR-1/hParkin negatively regulates the phagocyosis of apoptotic cell corpses in Caenorhabditis elegans

Apoptotic cell death is an integral part of cell turnover in many tissues, and proper corpse clearance is vital to maintaining tissue homeostasis in all multicellular organisms. Even in tissues with high cellular turnover, apoptotic cells are rarely seen because of efficient clearance mechanisms in healthy individuals. In Caenorhabditis elegans, two parallel and partly redundant conserved pathways act in cell corpse engulfment. The pathway for cytoskeletal rearrangement requires the small GTPase CED-10 Rac1 acting for an efficient surround of the dead cell. The CED-10 Rac pathway is also required for the proper migration of the distal tip cells (DTCs) during the development of the C. elegans gonad. Parkin, the mammalian homolog of the C. elegans PDR-1, interacts with Rac1 in aged human brain and it is also implicated with actin dynamics and cytoskeletal rearrangements in Parkinsons's disease, suggesting that it might act on engulfment. Our genetic and biochemical studies indicate that PDR-1 inhibits apoptotic cell engulfment and DTC migration by ubiquitylating CED-10 for degradation

PDR-1/hParkin negatively regulates the phagocytosis of apoptotic cell corpses in Caenorhabditis elegans

Apoptotic cell death is an integral part of cell turnover in many tissues, and proper corpse clearance is vital to maintaining tissue homeostasis in all multicellular organisms. Even in tissues with high cellular turnover, apoptotic cells are rarely seen because of efficient clearance mechanisms in healthy individuals. In Caenorhabditis elegans, two parallel and partly redundant conserved pathways act in cell corpse engulfment. The pathway for cytoskeletal rearrangement requires the small GTPase CED-10 Rac1 acting for an efficient surround of the dead cell. The CED-10 Rac pathway is also required for the proper migration of the distal tip cells (DTCs) during the development of the C. elegans gonad. Parkin, the mammalian homolog of the C. elegans PDR-1, interacts with Rac1 in aged human brain and it is also implicated with actin dynamics and cytoskeletal rearrangements in Parkinsons's disease, suggesting that it might act on engulfment. Our genetic and biochemical studies indicate that PDR-1 inhibits apoptotic cell engulfment and DTC migration by ubiquitylating CED-10 for degradation

The zCOSMOS redshift survey : Influence of luminosity, mass and environment on the galaxy merger rate

The contribution of major mergers to galaxy mass assembly along cosmic time is an important ingredient to the galaxy evolution scenario. We aim to measure the evolution of the merger rate for both luminosity/mass selected galaxy samples and investigate its dependence with the local environment. We use a sample of 10644 spectroscopically observed galaxies from the zCOSMOS redshift survey to identify pairs of galaxies destined to merge, using only pairs for which the velocity difference and projected separation of both components with a confirmed spectroscopic redshift indicate a high probability of merging. We have identified 263 spectroscopically confirmed pairs with r_p^{max} = 100 h^{-1} kpc. We find that the density of mergers depends on luminosity/mass, being higher for fainter/less massive galaxies, while the number of mergers a galaxy will experience does not depends significantly on its intrinsic luminosity but rather on its stellar mass. We find that the pair fraction and merger rate increase with local galaxy density, a property observed up to redshift z=1. We find that the dependence of the merger rate on the luminosity or mass of galaxies is already present up to redshifts z=1, and that the evolution of the volumetric merger rate of bright (massive) galaxies is relatively flat with redshift with a mean value of 3*10^{-4} (8*10^{-5} respectively) mergers h^3 Mpc^{-3} Gyr^{-1}. The dependence of the merger rate with environment indicates that dense environments favors major merger events as can be expected from the hierarchical scenario. The environment therefore has a direct impact in shapping-up the mass function and its evolution therefore plays an important role on the mass growth of galaxies along cosmic time.Comment: submitted to A&A, 17 pages, 12 figure

The zCOSMOS 10k-sample: the role of galaxy stellar mass in the colour-density relation up to z=1

[Abridged] With the first 10000 spectra of the flux limited zCOSMOS sample (I<=22.5) we study the evolution of environmental effects on galaxy properties since z=1.0, and disentangle the dependence among galaxy colour, stellar mass and local density (3D local density contrast `delta', computed with the 5th nearest neighbour approach). We confirm that within a luminosity-limited sample (M_B=1) galaxies 'f_red' depends on delta at least up to z=1, with red galaxies residing mainly in high densities. This trend weakens for increasing z, and it is mirrored by the behaviour of the fraction of galaxies with D4000A break >=1.4. We also find that up to z=1 the fraction of galaxies with log(EW[OII]) >=1.15 is higher for lower delta, and also this dependence weakens for increasing z. Given the triple dependence among galaxy colours, stellar mass and delta, the colour-delta relation found in the luminosity-selected sample can be due to the broad range of stellar masses. Thus, we fix the stellar mass and we find that in this case the colour-delta relation is flat up to z=1 for galaxies with log(M/M_sun)>=10.7. This means that for these masses the colour-delta relation found in a luminosity-selected sample is the result of the combined colour-mass and mass-delta relations. In contrast, we find that for 0.1<=z<=0.5 and log(M/M_sun)<=10.7 'f_red' depends on delta even at fixed mass. In these mass and z ranges, environment affects directly also galaxy colours. We suggest a scenario in which the colour depends primarily on stellar mass, but for relatively low mass galaxies the local density modulates this dependence. These galaxies formed more recently, in an epoch when evolved structures were already in place, and their longer SFH allowed environment-driven physical processes to operate during longer periods of time.Comment: 19 pages, 12 figures, submitted to A&A, revised version after referee comment

The zCOSMOS 20k Group Catalog

We present an optical group catalog between 0.1 < z < 1 based on 16,500 high-quality spectroscopic redshifts in the completed zCOSMOS-bright survey. The catalog published herein contains 1498 groups in total and 192 groups with more than five observed members. The catalog includes both group properties and the identification of the member galaxies. Based on mock catalogs, the completeness and purity of groups with three and more members should be both about 83% with respect to all groups that should have been detectable within the survey, and more than 75% of the groups should exhibit a one-to-one correspondence to the "real" groups. Particularly at high redshift, there are apparently more galaxies in groups in the COSMOS field than expected from mock catalogs. We detect clear evidence for the growth of cosmic structure over the last seven billion years in the sense that the fraction of galaxies that are found in groups (in volume-limited samples) increases significantly with cosmic time. In the second part of the paper, we develop a method for associating galaxies that only have photo-z to our spectroscopically identified groups. We show that this leads to improved definition of group centers, improved identification of the most massive galaxies in the groups, and improved identification of central and satellite galaxies, where we define the former to be galaxies at the minimum of the gravitational potential wells. Subsamples of centrals and satellites in the groups can be defined with purities up to 80%, while a straight binary classification of all group and non-group galaxies into centrals and satellites achieves purities of 85% and 75%, respectively, for the spectroscopic sample.Comment: 26 pages, 21 figures, published in ApJ (along with machine-readable tables

The dependence of Galactic outflows on the properties and orientation of zCOSMOS galaxies at z ~ 1

We present an analysis of cool outflowing gas around galaxies, traced by MgII absorption lines in the co-added spectra of a sample of 486 zCOSMOS galaxies at 1 < z < 1.5. These galaxies span a range of stellar masses (9.45< log[M*/Msun]<10.7) and star formation rates (0.14 < log [SFR/Msun/yr] < 2.35). We identify the cool outflowing component in the MgII absorption and find that the equivalent width of the outflowing component increases with stellar mass. The outflow equivalent width also increases steadily with the increasing star formation rate of the galaxies. At similar stellar masses the blue galaxies exhibit a significantly higher outflow equivalent width as compared to red galaxies. The outflow equivalent width shows strong effect with star formation surface density ({\Sigma}SFR) of the sample. For the disk galaxies, the outflow equivalent width is higher for the face-on systems as compared to the edge-on ones, indicating that for the disk galaxies, the outflowing gas is primarily bipolar in geometry. Galaxies typically exhibit outflow velocities ranging from -200 km/s to -300 km/s and on average the face-on galaxies exhibit higher outflow velocity as compared to the edge-on ones. Galaxies with irregular morphologies exhibit outflow equivalent width as well as outflow velocities comparable to face on disk galaxies. These galaxies exhibit minimum mass outflow rates > 5-7 Msun/yr and a mass loading factor ({\eta} = dMout/dt /SFR) comparable to the star formation rates of the galaxies.Comment: 12 pages, 14 figures, ApJ submitte

The zCOSMOS redshift survey: how group environment alters global downsizing trends

Context. Groups of galaxies are a common environment, bridging the gap between starforming field galaxies and quiescent cluster galaxies. Within groups secular processes could be at play, contributing to the observed strong decrease of star formation with cosmic time in the global galaxy population. Aims. We took advantage of the wealth of information provided by the first ~10 000 galaxies of the zCOSMOS-bright survey and its group catalogue to study in detail the complex interplay between group environment and galaxy properties. Methods. The classical indicator F_(blue), i.e., the fraction of blue galaxies, proved to be a simple but powerful diagnostic tool. We studied its variation for different luminosity and mass selected galaxy samples, divided as to define groups/field/isolated galaxy subsamples. Results. Using rest-frame evolving B-band volume-limited samples, the groups galaxy population exhibits significant blueing as redshift increases, but maintains a systematic difference (a lower F_(blue)) with respect to the global galaxy population, and an even larger difference with respect to the isolated galaxy population. However moving to mass selected samples it becomes apparent that such differences are largely due to the biased view imposed by the B-band luminosity selection, being driven by the population of lower mass, bright blue galaxies for which we miss the redder, equally low mass, counterparts. By carefully focusing the analysis on narrow mass bins such that mass segregation becomes negligible we find that only for the lowest mass bin explored, i.e., log(M_*/M_☉) ≤ 10.6, does a significant residual difference in color remain as a function of environment, while this difference becomes negligible toward higher masses. Conclusions. Our results indicate that red galaxies of mass log(M_*/M_☉) ≥ 10.8 are already in place at z ~ 1 and do not exhibit any strong environmental dependence, possibly originating from so-called nature or internal mechanisms. In contrast, for lower galaxy masses and redshifts lower than z ~ 1, we observe the emergence in groups of a population of nurture red galaxies: slightly deviating from the trend of the downsizing scenario followed by the global galaxy population, and more so with cosmic time. These galaxies exhibit signatures of group-related secular physical mechanisms directly influencing galaxy evolution. Our analysis implies that these mechanisms begin to significantly influence galaxy evolution after z ~ 1, a redshift corresponding to the emergence of structures in which these mechanisms take place

The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages

Little is known about the peopling of the Sahara during the Holocene climatic optimum, when the desert was replaced by a fertile environment

The zCOSMOS survey: the role of the environment in the evolution of the luminosity function of different galaxy types

Aims. An unbiased and detailed characterization of the galaxy luminosity function (LF) is a basic requirement in many astrophysical issues: it is of particular interest in assessing the role of the environment in the evolution of the LF of different galaxy types. Methods. We studied the evolution in the B band LF to redshift z ~ 1 in the zCOSMOS 10k sample, for which both accurate galaxy classifications (spectrophotometric and morphological) and a detailed description of the local density field are available. Results. The global B band LF exhibits a brightening of ~0.7 mag in M^* from z ~ 0.2 to z ~ 0.9. At low redshifts (z -20), while the bright end is populated mainly by spectrophotometric early types. At higher redshift, spectrophotometric late-type galaxies evolve significantly and, at redshift z ~ 1, the contribution from the various types to the bright end of the LF is comparable. The evolution for spectrophotometric early-type galaxies is in both luminosity and normalization: M* brightens by ~0.6 mag but φ^∗ decreases by a factor ~1.7 between the first and the last redshift bin. A similar behaviour is exhibited by spectrophotometric late-type galaxies, but with an opposite trend for the normalization: a brightening of ~0.5 mag is present in M^*, while φ^∗ increases by a factor ~1.8.
Studying the role of the environment, we find that the global LF of galaxies in overdense regions has always a brighter M^* and a flatter slope. In low density environments, the main contribution to the LF is from blue galaxies, while for high density environments there is an important contribution from red galaxies to the bright end.
The differences between the global LF in the two environments are not due to only a difference in the relative numbers of red and blue galaxies, but also to their relative luminosity distributions: the value of M^* for both types in underdense regions is always fainter than in overdense environments. These results indicate that galaxies of the same type in different environments have different properties.
We also detect a differential evolution in blue galaxies in different environments: the evolution in their LF is similar in underdense and overdense regions between z ~ 0.25 and z ~ 0.55, and is mainly in luminosity. In contrast, between z ~ 0.55 and z ~ 0.85 there is little luminosity evolution but there is significant evolution in φ^∗, that is, however, different between the two environments: in overdense regions φ^∗ increases by a factor ~1.6, while in underdense regions this increase reaches a factor ~2.8. Analyzing the blue galaxy population in more detail, we find that this evolution is driven mainly by the bluest types. Conclusions. The “specular” evolution of late- and early-type galaxies is consistent with a scenario where a part of blue galaxies is transformed in red galaxies with increasing cosmic time, without significant changes in the fraction of intermediate-type galaxies. The bulk of this tranformation in overdense regions probably happened before z ~ 1, while it is still ongoing at lower redshifts in underdense environments