High-resolution continuous-flow analysis setup for water isotopic measurement from ice cores using laser spectroscopy

Here we present an experimental setup for water stable isotope (&delta;¹⁸O and δD) continuous-flow measurements and provide metrics defining the performance of the setup during a major ice core measurement campaign (Roosevelt Island Climate Evolution; RICE). We also use the metrics to compare alternate systems. Our setup is the first continuous-flow laser spectroscopy system that is using off-axis integrated cavity output spectroscopy (OA-ICOS; analyzer manufactured by Los Gatos Research, LGR) in combination with an evaporation unit to continuously analyze water samples from an ice core. <br><br> A Water Vapor Isotope Standard Source (WVISS) calibration unit, manufactured by LGR, was modified to (1) enable measurements on several water standards, (2) increase the temporal resolution by reducing the response time and (3) reduce the influence from memory effects. While this setup was designed for the continuous-flow analysis (CFA) of ice cores, it can also continuously analyze other liquid or vapor sources. <br><br> The custom setups provide a shorter response time (~ 54 and 18 s for 2013 and 2014 setup, respectively) compared to the original WVISS unit (~ 62 s), which is an improvement in measurement resolution. Another improvement compared to the original WVISS is that the custom setups have a reduced memory effect. <br><br> Stability tests comparing the custom and WVISS setups were performed and Allan deviations (&sigma;_Allan) were calculated to determine precision at different averaging times. For the custom 2013 setup the precision after integration times of 10³ s is 0.060 and 0.070 &permil; for δ¹⁸O and δD, respectively. The corresponding &sigma;_Allan values for the custom 2014 setup are 0.030, 0.060 and 0.043 &permil; for &delta;¹⁸O, δD and &delta;¹⁷O, respectively. For the WVISS setup the precision is 0.035, 0.070 and 0.042 &permil; after 10³ s for δ¹⁸O, δD and &delta;¹⁷O, respectively. Both the custom setups and WVISS setup are influenced by instrumental drift with δ¹⁸O being more drift sensitive than δD. The &sigma;_Allan values for δ¹⁸O are 0.30 and 0.18 &permil; for the custom 2013 and WVISS setup, respectively, after averaging times of 10⁴ s (2.78 h). Using response time tests and stability tests, we show that the custom setups are more responsive (shorter response time), whereas the University of Copenhagen (UC) setup is more stable. More broadly, comparisons of different setups address the challenge of integrating vaporizer/spectrometer isotope measurement systems into a CFA campaign with many other analytical instruments

Calculating uncertainty for the RICE ice core continuous flow analysis water isotope record

We describe a systematic approach to the calibration and uncertainty estimation of a high-resolution continuous flow analysis (CFA) water isotope (δ2H, δ18O) record from the Roosevelt Island Climate Evolution (RICE) Antarctic ice core. Our method establishes robust uncertainty estimates for CFA δ2H and δ18O measurements, comparable to those reported for discrete sample δ2H and δ18O analysis. Data were calibrated using a time-weighted two-point linear calibration with two standards measured both before and after continuously melting 3 or 4&thinsp;m of ice core. The error at each data point was calculated as the quadrature sum of three factors: Allan variance error, scatter over our averaging interval (error of the variance) and calibration error (error of the mean). Final mean total uncertainty for the entire record is δ2H = 0.74 ‰ and δ18O = 0.21 ‰. Uncertainties vary through the data set and were exacerbated by a range of factors, which typically could not be isolated due to the requirements of the multi-instrument CFA campaign. These factors likely occurred in combination and included ice quality, ice breaks, upstream equipment failure, contamination with drill fluid and leaks or valve degradation. We demonstrate that our methodology for documenting uncertainty was effective across periods of uneven system performance and delivered a significant achievement in the precision of high-resolution CFA water isotope measurements.</p

Decadal Scale Variability of Larsen Ice Shelf Melt Captured by Antarctic Peninsula Ice Core

In this study, we used the stable water isotope record (δ18O) from an ice core drilled in Palmer Land, southern Antarctic Peninsula (AP). Utilizing δ18O we identified two climate regimes during the satellite era. During the 1979–1998 positive interdecadal Pacific oscillation (IPO) phase, a low-pressure system north of the Weddell Sea drove southeasterly winds that are associated with an increase in warm air mass intrusion onto the Larsen shelves, which melted and a decreased sea ice concentration in the Weddell Sea/increase in the Bellingshausen Sea. This climate setting is associated with anomaly low δ18O values (compared with the latter IPO period). There is significantly more melt along the northern AP ice shelf margins and on the Larsen D and southern Larsen C during the 1979–1998 IPO positive phase. The IPO positive climatic setting was coincidental with the Larsen A ice shelf collapse. In contrast, during the IPO negative phase (1999–2011), northerly winds caused a reduction in sea ice in the Bellingshausen Sea/Drake Passage region. Moreover, a Southern Ocean north of the Weddell Sea high-pressure system caused low-latitude warm humid air over the tip and east of the AP, a setting that is associated with increased northern AP snowfall, a high δ18O anomaly, and less prone to Larsen ice shelf melt

Myths and Facts About Static Application Security Testing Tools: An Action Research at Telenor Digital

It is claimed that integrating agile and security in practice is challenging. There is the notion that security is a heavy process, requires expertise, and consumes developers’ time. These contrast with the agile vision. Regardless of these challenges, it is important for organizations to address security within their agile processes since critical assets must be protected against attacks. One way is to integrate tools that could help to identify security weaknesses during implementation and suggest methods to refactor them. We used quantitative and qualitative approaches to investigate the efficiency of the tools and what they mean to the actual users (i.e. developers) at Telenor Digital. Our findings, although not surprising, show that several barriers exist both in terms of tool’s performance and developers’ perceptions. We suggest practical ways for improvement.publishedVersio

Ice Core Chronologies from the Antarctic Peninsula: The Palmer, Jurassic, and Rendezvous Age-Scales

In this study, we present the age scales for three Antarctic Peninsula (AP) ice cores: Palmer, Rendezvous, and Jurassic. The three cores are all intermediate-depth cores, in the 133–141 m depth range. Non-sea-salt sulfate ([nssSO42−]) and hydrogen peroxide (H2O2) display marked seasonal variability suitable for annual-layer counting. The Palmer ice core covers 390 years, 1621–2011 C.E., and is one of the oldest AP cores. Rendezvous and Jurassic are lower elevation high-snow accumulation sites and therefore cover shorter intervals, 1843–2011 C.E. and 1874–2011 C.E., respectively. The age scales show good agreement with known volcanic age horizons. The three chronologies’ start and end dates of volcanic events are compared to the volcanic events in the published WAIS Divide core. The age difference for the Palmer age scale is ±6 months, Rendezvous ±9 months, and Jurassic ±7 months. Our results demonstrate the advantage of dating several cores from the same region at the same time. Additional confidence can be gained in the age scales by evaluating and finding synchronicity of [nssSO42−] peaks amongst the sites.</jats:p

The Ross Sea Dipole-temperature, snow accumulation and sea ice variability in the Ross Sea region, Antarctica, over the past 2700 years

High-resolution, well-dated climate archives provide an opportunity to investigate the dynamic interactions of climate patterns relevant for future projections. Here, we present data from a new, annually dated ice core record from the eastern Ross Sea, named the Roosevelt Island Climate Evolution (RICE) ice core. Comparison of this record with climate reanalysis data for the 1979-2012 interval shows that RICE reliably captures temperature and snow precipitation variability in the region. Trends over the past 2700 years in RICE are shown to be distinct from those in West Antarctica and the western Ross Sea captured by other ice cores. For most of this interval, the eastern Ross Sea was warming (or showing isotopic enrichment for other reasons), with increased snow accumulation and perhaps decreased sea ice concentration. However, West Antarctica cooled and the western Ross Sea showed no significant isotope temperature trend. This pattern here is referred to as the Ross Sea Dipole. Notably, during the Little Ice Age, West Antarctica and the western Ross Sea experienced colder than average temperatures, while the eastern Ross Sea underwent a period of warming or increased isotopic enrichment. From the 17th century onwards, this dipole relationship changed. All three regions show current warming, with snow accumulation declining in West Antarctica and the eastern Ross Sea but increasing in the western Ross Sea. We interpret this pattern as reflecting an increase in sea ice in the eastern Ross Sea with perhaps the establishment of a modern Roosevelt Island polynya as a local moisture source for RICE

A molecular insight into algal-oomycete warfare : cDNA analysis of Ectocarpus siliculosus infected with the basal oomycete Eurychasma dicksonii

Peer reviewedPublisher PD

A 2700-year annual timescale and accumulation history for an ice core from Roosevelt Island, West Antarctica

ice core, Ross Ice Shelf, West Antarctica. The core adds information on past accumulation changes in an otherwise poorly constrained sector of Antarctica. The timescale was constructed by identifying annual cycles in high-resolution impurity records, and it constitutes the top part of the Roosevelt Island Ice Core Chronology 2017 (RICE17). Validation by volcanic and methane matching to the WD2014 chronology from the WAIS Divide ice core shows that the two timescales are in excellent agreement. In a companion paper, gas matching to WAIS Divide is used to extend the timescale for the deeper part of the core in which annual layers cannot be identified. Based on the annually resolved timescale, we produced a record of past snow accumulation at Roosevelt Island. The accumulation history shows that Roosevelt Island experienced slightly increasing accumulation rates between 700 BCE and 1300 CE, with an average accumulation of 0.25±0.02 m water equivalent (w.e.) per year. Since 1300 CE, trends in the accumulation rate have been consistently negative, with an acceleration in the rate of decline after the mid-17th century. The current accumulation rate at Roosevelt Island is 0.210±0.002 m w.e. yr−1 (average since 1965 CE, ±2σ), and it is rapidly declining with a trend corresponding to 0.8 mm yr−2. The decline observed since the mid-1960s is 8 times faster than the long-term decreasing trend taking place over the previous centuries, with decadal mean accumulation rates consistently being below average. Previous research has shown a strong link between Roosevelt Island accumulation rates and the location and intensity of the Amundsen Sea Low, which has a significant impact on regional sea-ice extent. The decrease in accumulation rates at Roosevelt Island may therefore be explained in terms of a recent strengthening of the ASL and the expansion of sea ice in the eastern Ross Sea. The start of the rapid decrease in RICE accumulation rates observed in 1965 CE may thus mark the onset of significant increases in regional sea-ice extent

Ergatis: a web interface and scalable software system for bioinformatics workflows

Motivation: The growth of sequence data has been accompanied by an increasing need to analyze data on distributed computer clusters. The use of these systems for routine analysis requires scalable and robust software for data management of large datasets. Software is also needed to simplify data management and make large-scale bioinformatics analysis accessible and reproducible to a wide class of target users

Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence

BACKGROUND: Knowing the submitochondria localization of a mitochondria protein is an important step to understand its function. We develop a method which is based on an extended version of pseudo-amino acid composition to predict the protein localization within mitochondria. This work goes one step further than predicting protein subcellular location. We also try to predict the membrane protein type for mitochondrial inner membrane proteins. RESULTS: By using leave-one-out cross validation, the prediction accuracy is 85.5% for inner membrane, 94.5% for matrix and 51.2% for outer membrane. The overall prediction accuracy for submitochondria location prediction is 85.2%. For proteins predicted to localize at inner membrane, the accuracy is 94.6% for membrane protein type prediction. CONCLUSION: Our method is an effective method for predicting protein submitochondria location. But even with our method or the methods at subcellular level, the prediction of protein submitochondria location is still a challenging problem. The online service SubMito is now available at