From solar to stellar corona: the role of wind, rotation and magnetism

Observations of surface magnetic fields are now within reach for many stellar types thanks to the development of Zeeman-Doppler Imaging. These observations are extremely useful for constraining rotational evolution models of stars, as well as for characterizing the generation of magnetic field. We recently demonstrated that the impact of coronal magnetic field topology on the rotational braking of a star can be parametrized with a scalar parameter: the open magnetic flux. However, without running costly numerical simulations of the stellar wind, reconstructing the coronal structure of the large scale magnetic field is not trivial. An alternative -broadly used in solar physics- is to extrapolate the surface magnetic field assuming a potential field in the corona, to describe the opening of the field lines by the magnetized wind. This technique relies on the definition of a so-called source surface radius, which is often fixed to the canonical value of 2.5Rsun. However this value likely varies from star to star. To resolve this issue, we use our extended set of 2.5D wind simulations published in 2015, to provide a criteria for the opening of field lines as well as a simple tool to assess the source surface radius and the open magnetic flux. This allows us to derive the magnetic torque applied to the star by the wind from any spectropolarimetric observation. We conclude by discussing some estimations of spin-down time scales made using our technique, and compare them to observational requirements.Comment: Accepted for publication in the Astrophysical Journa

Molecular phylogenies disprove a hypothesized C4 reversion in Eragrostis walteri (Poaceae)

Background and Aims The main assemblage of the grass subfamily Chloridoideae is the largest known clade of C4 plant species, with the notable exception of Eragrostis walteri Pilg., whose leaf anatomy has been described as typical of C3 plants. Eragrostis walteri is therefore classically hypothesized to represent an exceptional example of evolutionary reversion from C4 to C3 photosynthesis. Here this hypothesis is tested by verifying the photosynthetic type of E. walteri and its classification. Methods Carbon isotope analyses were used to determine the photosynthetic pathway of several E. walteri accessions, and phylogenetic analyses of plastid rbcL and ndhF and nuclear internal transcribed spacer DNA sequences were used to establish the phylogenetic position of the species. Results Carbon isotope analyses confirmed that E. walteri is a C3 plant. However, phylogenetic analyses demonstrate that this species has been misclassified, showing that E. walteri is positioned outside Chloridoideae in Arundinoideae, a subfamily comprised entirely of C3 species. Conclusions The long-standing hypothesis of C4 to C3 reversion in E. walteri is rejected, and the classification of this species needs to be re-evaluate

Buckling-induced dislocation emission in thin films on substrates

AbstractAtomistic simulations of the evolution of a strained thin film on a substrate has been reported and the formation of dislocations has been observed in the film/substrate interface after the film has buckled. In the framework of the linear elasticity theory, an analytical model has been developed to explain the buckle effect on the formation of the dislocations. A stability diagram with respect to the buckling and dislocation emission phenomena is finally presented for the film as a function of the uniaxial strain and the Burgers vector

Sex and suicide : the curious case of Toll-like receptors

Copyright: © 2020 Navarro-Costa et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.During in vitro fertilisation (IVF), pharmacological activation of the murine X chromosome–encoded receptor proteins Toll-like receptor (TLR) 7 and TLR8 reportedly results in male-biased litters by selectively disrupting the motility of X-bearing sperm cells. Thus—in the context of agonist treatment during IVF—these receptors act as ‘suicidal’ segregation distorters that impair their own transmission to the next generation. Such behaviour would, from an evolutionary perspective, be strongly selected against if present during natural fertilisation. Consequently, TLR7/8 biology in vivo must differ significantly from this in vitro situation to allow these genes to persist in the genome. Here, we use our current understanding of male germ cell biology and TLR function as a starting point to explore the mechanistic and evolutionary aspects of this apparent paradox.The following funding sources are acknowledged: PAN-C, Fundação para a Ciência e a Tecnologia (PTDC/MEC-AND/30221/2017); AM, Damon Runyon Cancer Research Foundation (DRG:2192-14) and NIH (R01 GM074108); CSM, Fundação para a Ciência e a Tecnologia doctoral scholarship (PD/BD/114362/2016); CDM, NIH R01-GM123194; and PJE, the UK Higher Education Funding Council for England (HEFCE), the Biotechnology and Biological Sciences Research Council (BBSRC, BB/N000463/1), and the Leverhulme Trust (RPG-2019-414 194). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.info:eu-repo/semantics/publishedVersio

A Probabilistic Forecast-Driven Strategy for a Risk-Aware Participation in the Capacity Firming Market: extended version

This paper addresses the energy management of a grid-connected renewable generation plant coupled with a battery energy storage device in the capacity firming market, designed to promote renewable power generation facilities in small non-interconnected grids. The core contribution is to propose a probabilistic forecast-driven strategy, modeled as a min-max-min robust optimization problem with recourse. It is solved using a Benders-dual cutting plane algorithm and a column and constraints generation algorithm in a tractable manner. A dynamic risk-averse parameters selection strategy based on the quantile forecasts distribution is proposed to improve the results. A secondary contribution is to use a recently developed deep learning model known as normalizing flows to generate quantile forecasts of renewable generation for the robust optimization problem. This technique provides a general mechanism for defining expressive probability distributions, only requiring the specification of a base distribution and a series of bijective transformations. Overall, the robust approach improves the results over a deterministic approach with nominal point forecasts by finding a trade-off between conservative and risk-seeking policies. The case study uses the photovoltaic generation monitored on-site at the University of Li\`ege (ULi\`ege), Belgium.Comment: Extended version of the paper accepted for publication in IEEE Transactions on Sustainable Energ

Influence de la plasticité sur le délaminage et le flambage de films minces déposés sur substrats

Ce travail de thèse a pour objet l'étude de l'influence de la plasticité sur le délaminage et le flambage de films minces déposés sur substrats. Il repose sur une approche mixte combinant des simulations atomistiques et des calculs analytiques basés sur la théorie des plaques minces de Föppl-von Kármán (FvK). Les simulations ont permis de caractériser, au cours de la formation d'une ride droite, un mécanisme de glissement localisé dans l'interface en pied de cloque entraînant une augmentation de la déflexionmaximale de la ride. Ce mécanisme de glissement est également présent lorsque le délaminage piloté par le flambage du film mince est lui aussi observé. En l'intégrant dans le modèle élastique de FvK, la forme de la ride droite ainsi que le processus de délaminage ont ensuite été caractérisés. Le bon accord trouvé entre les simulations atomistiques et le modèle explique notamment le délaminage des cloques sans introduire de dépendance entre l'énergie d'adhésion et la mixité modale. L'initiation du cloquage à partir d'une marche d'interface créée par des dislocations venant du substrat a également été étudiée.Les simulations révèlent qu'avant flambage, le film se décolle à la fois sur le haut et sur le bas de la marche. Un mécanisme de glissement est là aussi identifié. Une déformation critique de flambage qui tient compte de ces phénomènes a été déterminée en modélisant le film mince sur la marche dans le formalisme de FvK. Les résultats des simulations couplés au modèle élastique expliquent, comme il est par ailleurs observé expérimentalement, pourquoi les cloques se forment préférentiellement au-dessus dedéfauts tels que des marches.The purpose of this thesis is to study the influence of plasticity on the delamination and buckling of thin films deposited on substrates. Combining atomistic simulations and analytic calculations performed in the framework of continuum mechanics, the microscopic processes consisting in the sliding of the atoms located at the base of the blister has been characterized during the formation of a straight-sided blister. This sliding effect has been found to increase the maximum deflection of the buckling structure. It also modifies the delamination process of the interface. Taking into account this sliding into the Föppl-von Kármán theory of thin plates (FvK), the shape of the straight-sided blister and the delamination process have been then characterized. The agreement found between the atomistic simulations and the model explains how the buckling-driven delaminationproceeds without introducing any dependence between the adhesion energy and the mode of mixity. The initiation of the buckling from a dislocation-induced interface step has been also investigated. The simulations show that, before buckling, the film delaminates on both sides of the step and a sliding mechanism is also observed. A critical buckling strain accounting for thesephenomena has been analytically determined in the FvK framework. The simulation results and the elastic model explain, as it has also been experimentally observed, why blistering preferentially occurs above step-like defects.POITIERS-SCD-Bib. électronique (861949901) / SudocSudocFranceF

Molecular Dating, Evolutionary Rates, and the Age of the Grasses

Many questions in evolutionary biology require an estimate of divergence times but, for groups with a sparse fossil record, such estimates rely heavily on molecular dating methods. The accuracy of these methods depends on both an adequate underlying model and the appropriate implementation of fossil evidence as calibration points. We explore the effect of these in Poaceae (grasses), a diverse plant lineage with a very limited fossil record, focusing particularly on dating the early divergences in the group. We show that molecular dating based on a data set of plastid markers is strongly dependent on the model assumptions. In particular, an acceleration of evolutionary rates at the base of Poaceae followed by a deceleration in the descendants strongly biases methods that assume an autocorrelation of rates. This problem can be circumvented by using markers that have lower rate variation, and we show that phylogenetic markers extracted from complete nuclear genomes can be a useful complement to the more commonly used plastid markers. However, estimates of divergence times remain strongly affected by different implementations of fossil calibration points. Analyses calibrated with only macrofossils lead to estimates for the age of core Poaceae ∼51-55 Ma, but the inclusion of microfossil evidence pushes this age to 74-82 Ma and leads to lower estimated evolutionary rates in grasses. These results emphasize the importance of considering markers from multiple genomes and alternative fossil placements when addressing evolutionary issues that depend on ages estimated for important group

Microbial oil produced from biodiesel by-products could enhance overall production

Glycerol and rapeseed meal, two major by-products of biodiesel production, have been tested for possible use as low-cost raw materials for the production of microbial bio-oil using the oleaginous yeast Rhodosporidium toruloides. Using fed-batch fermentation with crude glycerol and a novel nitrogen rich nutrient source derived from rapeseed meal as feed, it was shown that 13 g/L lipids could be roduced, compared with 9.4 g/L when crude glycerol was used with yeast extract. When 100 g/L pure glycerol was used, the final lipid concentration was 19.7 g/L with the novel biomedium compared to 16.2 g/L for yeast extract. The novel biomedium also resulted in higher lipid yields (0.19 g lipid/g glycerol consumed compared to 0.12 g/L) suggesting it provides a better carbon to nitrogen balance for accumulating lipids. FAMEs produced from the microbial lipids indicated a high degree of unsaturation confirming that the fatty acids produced from the novel biomedium have potential for biodiesel production

Gene Duplication and Dosage Effects During The Early Emergence of C4 Photosynthesis in The Grass Genus <i>Alloteropsis</i>

The importance of gene duplication for evolutionary diversification has been mainly discussed in terms of genetic redundancy allowing neofunctionalization. In the case of C4 photosynthesis, which evolved via the co-option of multiple enzymes to boost carbon fixation in tropical conditions, the importance of genetic redundancy has not been consistently supported by genomic studies. Here, we test for a different role for gene duplication in the early evolution of C4 photosynthesis, via dosage effects creating rapid step changes in expression levels. Using genome-wide data for accessions of the grass genus Alloteropsis that recently diversified into different photosynthetic types, we estimate gene copy numbers and demonstrate that recurrent duplications in two important families of C4 genes coincided with increases in transcript abundance along the phylogeny, in some cases via a pure dosage effect. While increased gene copy number during the initial emergence of C4 photosynthesis probably offered a rapid route to enhanced expression, we also find losses of duplicates following the acquisition of genes encoding better-suited isoforms. The dosage effect of gene duplication might therefore act as a transient process during the evolution of a C4 biochemistry, rendered obsolete by the fixation of regulatory mutations increasing expression levels