Finite Size Effects in Quark-Gluon Plasma Formation

Using lattice simulations of quenched QCD we estimate the finite size effects present when a gluon plasma equilibrates in a slab geometry, i.e., finite width but large transverse dimensions. Significant differences are observed in the free energy density for the slab when compared with bulk behavior. A small shift in the critical temperature is also seen. The free energy required to liberate heavy quarks relative to bulk is measured using Polyakov loops; the additional free energy required is on the order of $30-40 MeV$ at $2-3 T_c$.Comment: LATTICE98(hightemp), talk at Lattice 98, 3 pages, 3 encapsulated postscript figures, uses espcrc2.st

A First Principles Estimate of Finite Size Effects in Quark-Gluon Plasma Formation

Using lattice simulations of quenched QCD we estimate the finite size effects present when a gluon plasma equilibrates in a slab geometry, i.e., finite width but large transverse dimensions. Significant differences are observed in the free energy density for the slab when compared with bulk behavior. A small shift in the critical temperature is also seen. The free energy required to liberate heavy quarks relative to bulk is measured using Polyakov loops; the additional free energy required is on the order of 30-40 MeV at 2-3 T_c.Comment: 10 pages, 5 figures, RevTeX; revised version includes comparison with the Bjorken model and various small improvement

No-Boundary Thinking in Bioinformatics

The following sections are included:Bioinformatics is a Mature DisciplineThe Golden Era of Bioinformatics Has BegunNo-Boundary Thinking in BioinformaticsReference

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

We describe a genetic variation map for the chicken genome containing 2.8 million single-nucleotide polymorphisms ( SNPs). This map is based on a comparison of the sequences of three domestic chicken breeds ( a broiler, a layer and a Chinese silkie) with that of their wild ancestor, red jungle fowl. Subsequent experiments indicate that at least 90% of the variant sites are true SNPs, and at least 70% are common SNPs that segregate in many domestic breeds. Mean nucleotide diversity is about five SNPs per kilobase for almost every possible comparison between red jungle fowl and domestic lines, between two different domestic lines, and within domestic lines - in contrast to the notion that domestic animals are highly inbred relative to their wild ancestors. In fact, most of the SNPs originated before domestication, and there is little evidence of selective sweeps for adaptive alleles on length scales greater than 100 kilobases

Local Lyman Break Galaxy Analogs: The Impact of Massive Star-forming Clumps on the Interstellar Medium and the Global Structure of Young, Forming Galaxies

We present HST UV/optical imaging, Spitzer mid-IR photometry, and optical spectroscopy of a sample of 30 low-redshift (z=0.1-0.3) galaxies chosen from SDSS/GALEX to be accurate local analogs of the high-z Lyman Break Galaxies. The Lyman Break Analogs (LBAs) are similar in mass, metallicity, dust, SFR, size and gas velocity dispersion, thus enabling a detailed investigation of processes that are important at high-z. The optical emission line properties of LBAs are also similar to those of LBGs, indicating comparable conditions in their ISM. In the UV, LBAs are characterized by complexes of massive star-forming "clumps", while in the optical they most often show evidence for (post-)mergers/interactions. In 6 cases, we find an extremely massive (>10^9 Msun) compact (R~100 pc) dominant central object (DCO). The DCOs are preferentially found in LBAs with the highest mid-IR luminosities and correspondingly high SFRs (15-100 Msun/yr). We show that the massive SF clumps (including the DCOs) have masses much larger than the nuclear super star clusters seen in normal late type galaxies. However, the DCOs have masses, sizes, and densities similar to the excess-light/central-cusps seen in typical elliptical galaxies with masses similar to the LBA galaxies. We suggest that the DCOs form in present-day examples of the dissipative mergers at high redshift that are believed to have produced the central-cusps in local ellipticals. More generally, the properties of the LBAs are consistent with the idea that instabilities in a gas-rich disk lead to very massive star-forming clumps that eventually coalesce to form a spheroid. We speculate that the DCOs are too young at present to be growing a supermassive black hole because they are still in a supernova-dominated outflow phase.Comment: The Astrophysical Journal, In Press (22 pages, 16 figures). For the full version with high-resolution colour figures, see: http://www.mpa-garching.mpg.de/~overzier/Overzier_LBApaper09.pd

No-Boundary Thinking in Bioinformatics Research

Currently there are definitions from many agencies and research societies defining bioinformatics as deriving knowledge from computational analysis of large volumes of biological and biomedical data. Should this be the bioinformatics research focus? We will discuss this issue in this review article. We would like to promote the idea of supporting human-infrastructure (HI) with no-boundary thinking (NT) in bioinformatics (HINT)