Detection of CMB-cluster lensing using polarization data from SPTpol

We report the first detection of gravitational lensing due to galaxy clusters using only the polarization of the cosmic microwave background (CMB). The lensing signal is obtained using a new estimator that extracts the lensing dipole signature from stacked images formed by rotating the cluster-centered Stokes Q U map cutouts along the direction of the locally measured background CMB polarization gradient. Using data from the SPTpol 500     deg 2 survey at the locations of roughly 18 000 clusters with richness λ ≥ 10 from the Dark Energy Survey (DES) Year-3 full galaxy cluster catalog, we detect lensing at 4.8 σ . The mean stacked mass of the selected sample is found to be ( 1.43 ± 0.40 ) × 10 14 M ⊙ which is in good agreement with optical weak lensing based estimates using DES data and CMB-lensing based estimates using SPTpol temperature data. This measurement is a key first step for cluster cosmology with future low-noise CMB surveys, like CMB-S4, for which CMB polarization will be the primary channel for cluster lensing measurements

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

DES Science Portal: Computing Photometric Redshifts

International audienceA significant challenge facing photometric surveys for cosmological purposes is the need to produce reliable redshift estimates. The estimation of photometric redshifts (photo- z s) has been consolidated as the standard strategy to bypass the high production costs and incompleteness of spectroscopic redshift samples. Training-based photo- z methods require the preparation of a high-quality list of spectroscopic redshifts, which needs to be constantly updated. The photo- z training, validation, and estimation must be performed in a consistent and reproducible way in order to accomplish the scientific requirements. To meet this purpose, we developed an integrated web-based data interface that not only provides the framework to carry out the above steps in a systematic way, enabling the ease testing and comparison of different algorithms, but also addresses the processing requirements by parallelizing the calculation in a transparent way for the user. This framework called the Science Portal (hereafter Portal) was developed in the context the Dark Energy Survey (DES) to facilitate scientific analysis. In this paper, we show how the Portal can provide a reliable environment to access vast datasets, provide validation algorithms and metrics, even in the case of multiple photo- z s methods. It is possible to maintain the provenance between the steps of a chain of workflows while ensuring reproducibility of the results. We illustrate how the Portal can be used to provide photo- z estimates using the DES first year (Y1A1) data. While the DES collaboration is still developing techniques to obtain more precise photo- z s, having a structured framework like the one presented here is critical for the systematic vetting of DES algorithmic improvements and the consistent production of photo- z s in future DES releases

SPT Clusters with DES and HST Weak Lensing. II. Cosmological Constraints from the Abundance of Massive Halos

International audienceWe present cosmological constraints from the abundance of galaxy clusters selected via the thermal Sunyaev-Zel'dovich (SZ) effect in South Pole Telescope (SPT) data with a simultaneous mass calibration using weak gravitational lensing data from the Dark Energy Survey (DES) and the Hubble Space Telescope (HST). The cluster sample is constructed from the combined SPT-SZ, SPTpol ECS, and SPTpol 500d surveys, and comprises 1,005 confirmed clusters in the redshift range $0.25-1.78$ over a total sky area of 5,200 deg$^2$. We use DES Year 3 weak-lensing data for 688 clusters with redshifts $z<0.95$ and HST weak-lensing data for 39 clusters with $0.6<z<1.7$. The weak-lensing measurements enable robust mass measurements of sample clusters and allow us to empirically constrain the SZ observable--mass relation. For a flat $\Lambda$CDM cosmology, and marginalizing over the sum of massive neutrinos, we measure $\Omega_\mathrm{m}=0.286\pm0.032$, $\sigma_8=0.817\pm0.026$, and the parameter combination $\sigma_8\,(\Omega_\mathrm{m}/0.3)^{0.25}=0.805\pm0.016$. Our measurement of $S_8\equiv\sigma_8\,\sqrt{\Omega_\mathrm{m}/0.3}=0.795\pm0.029$ and the constraint from Planck CMB anisotropies (2018 TT,TE,EE+lowE) differ by $1.1\sigma$. In combination with that Planck dataset, we place a 95% upper limit on the sum of neutrino masses $\sum m_\nu<0.18$ eV. When additionally allowing the dark energy equation of state parameter $w$ to vary, we obtain $w=-1.45\pm0.31$ from our cluster-based analysis. In combination with Planck data, we measure $w=-1.34^{+0.22}_{-0.15}$, or a $2.2\sigma$ difference with a cosmological constant. We use the cluster abundance to measure $\sigma_8$ in five redshift bins between 0.25 and 1.8, and we find the results to be consistent with structure growth as predicted by the $\Lambda$CDM model fit to Planck primary CMB data

SPT Clusters with DES and HST Weak Lensing. II. Cosmological Constraints from the Abundance of Massive Halos

International audienceWe present cosmological constraints from the abundance of galaxy clusters selected via the thermal Sunyaev-Zel'dovich (SZ) effect in South Pole Telescope (SPT) data with a simultaneous mass calibration using weak gravitational lensing data from the Dark Energy Survey (DES) and the Hubble Space Telescope (HST). The cluster sample is constructed from the combined SPT-SZ, SPTpol ECS, and SPTpol 500d surveys, and comprises 1,005 confirmed clusters in the redshift range $0.25-1.78$ over a total sky area of 5,200 deg$^2$. We use DES Year 3 weak-lensing data for 688 clusters with redshifts $z<0.95$ and HST weak-lensing data for 39 clusters with $0.6<z<1.7$. The weak-lensing measurements enable robust mass measurements of sample clusters and allow us to empirically constrain the SZ observable--mass relation. For a flat $\Lambda$CDM cosmology, and marginalizing over the sum of massive neutrinos, we measure $\Omega_\mathrm{m}=0.286\pm0.032$, $\sigma_8=0.817\pm0.026$, and the parameter combination $\sigma_8\,(\Omega_\mathrm{m}/0.3)^{0.25}=0.805\pm0.016$. Our measurement of $S_8\equiv\sigma_8\,\sqrt{\Omega_\mathrm{m}/0.3}=0.795\pm0.029$ and the constraint from Planck CMB anisotropies (2018 TT,TE,EE+lowE) differ by $1.1\sigma$. In combination with that Planck dataset, we place a 95% upper limit on the sum of neutrino masses $\sum m_\nu<0.18$ eV. When additionally allowing the dark energy equation of state parameter $w$ to vary, we obtain $w=-1.45\pm0.31$ from our cluster-based analysis. In combination with Planck data, we measure $w=-1.34^{+0.22}_{-0.15}$, or a $2.2\sigma$ difference with a cosmological constant. We use the cluster abundance to measure $\sigma_8$ in five redshift bins between 0.25 and 1.8, and we find the results to be consistent with structure growth as predicted by the $\Lambda$CDM model fit to Planck primary CMB data

SPT Clusters with DES and HST Weak Lensing. II. Cosmological Constraints from the Abundance of Massive Halos

International audienceWe present cosmological constraints from the abundance of galaxy clusters selected via the thermal Sunyaev-Zel'dovich (SZ) effect in South Pole Telescope (SPT) data with a simultaneous mass calibration using weak gravitational lensing data from the Dark Energy Survey (DES) and the Hubble Space Telescope (HST). The cluster sample is constructed from the combined SPT-SZ, SPTpol ECS, and SPTpol 500d surveys, and comprises 1,005 confirmed clusters in the redshift range $0.25-1.78$ over a total sky area of 5,200 deg$^2$. We use DES Year 3 weak-lensing data for 688 clusters with redshifts $z<0.95$ and HST weak-lensing data for 39 clusters with $0.6<z<1.7$. The weak-lensing measurements enable robust mass measurements of sample clusters and allow us to empirically constrain the SZ observable--mass relation. For a flat $\Lambda$CDM cosmology, and marginalizing over the sum of massive neutrinos, we measure $\Omega_\mathrm{m}=0.286\pm0.032$, $\sigma_8=0.817\pm0.026$, and the parameter combination $\sigma_8\,(\Omega_\mathrm{m}/0.3)^{0.25}=0.805\pm0.016$. Our measurement of $S_8\equiv\sigma_8\,\sqrt{\Omega_\mathrm{m}/0.3}=0.795\pm0.029$ and the constraint from Planck CMB anisotropies (2018 TT,TE,EE+lowE) differ by $1.1\sigma$. In combination with that Planck dataset, we place a 95% upper limit on the sum of neutrino masses $\sum m_\nu<0.18$ eV. When additionally allowing the dark energy equation of state parameter $w$ to vary, we obtain $w=-1.45\pm0.31$ from our cluster-based analysis. In combination with Planck data, we measure $w=-1.34^{+0.22}_{-0.15}$, or a $2.2\sigma$ difference with a cosmological constant. We use the cluster abundance to measure $\sigma_8$ in five redshift bins between 0.25 and 1.8, and we find the results to be consistent with structure growth as predicted by the $\Lambda$CDM model fit to Planck primary CMB data

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

The past 2 years, during which waves of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants swept the globe, have starkly highlighted health disparities across nations. Tegally et al. show how the coordinated efforts of talented African scientists have in a short time made great contributions to pandemic surveillance and data gathering. Their efforts and initiatives have provided early warning that has likely benefited wealthier countries more than their own. Genomic surveillance identified the emergence of the highly transmissible Beta and Omicron variants and now the appearance of Omicron sublineages in Africa. However, it is imperative that technology transfer for diagnostics and vaccines, as well the logistic wherewithal to produce and deploy them, match the data-gathering effort