A Simple Correction Term to Model Infiltration in Water-Repellent Soils

Soil water repellency can substantially alter hydrologic processes, particularly the ability of soils to infiltrate water. Water repellency often changes through time, making it difficult to simulate infiltration behaviors of water-repellent soils using standard models. Here, we propose a simple rate-based correction term that starts with a value of zero at the beginning of the infiltration process (t = 0) and asymptotically approaches 1 as time increases, thus simulating decreasing soil water repellency through time. The correction term can be used with any infiltration model. For this study, we selected a simple two-term infiltration equation and then, using two data sets of infiltration measurements conducted in soils with varying water repellency, compared model error with versus without the added term. The correction substantially reduced model error, particularly in more repellent soils. At the same time, the rate constant parameter introduced in the new model may be useful to better understand dynamics of soil water repellency and to provide more consistent interpretations of hydraulic properties in water-repellent soils

An open-source instrumentation package for intensive soil hydraulic characterization

We present a new open-source and modular instrumentation package composed of up to ten automatic infiltrometers connected to data acquisition systems for automatic recording of multiple infiltration experiments. The infiltrometers are equipped with differential transducers to monitor water level changes in a Mariotte reservoir, and, in turn, to quantify water infiltration rates. The data acquisition systems consist of low-cost components and operate on the open-source microcontroller platform Arduino. The devices were tested both in the laboratory and on different urban and agricultural soils in France and India. More specifically, we tested three procedures to treat the transducers readings, including a filtering algorithm that substantially improved the ability to determine cumulative infiltration from raw data. We combined these three procedures with four methods for estimating the soil parameters from infiltrometer data, showing pros and cons of each scenario. We also demonstrated advantages in using the automatic infiltrometers when infiltration measurements were hindered by: i) linearity in cumulative infiltration curves owing to gravity-driven flow, ii) an imprecise description of the transient state of infiltration, and iii) the occurrence of soil water repellency. The use of the automatic infiltrometers allows the user to obtain more accurate estimates of soil hydraulic parameters, while also reducing the amount of effort needed to run multiple experiments

Detecting infiltrated water and preferential flow pathways through time-lapse ground-penetrating radar surveys

The objective of this paper was to identify the incidence and extent of preferential flow at two experimental areas located in Lyon, France. We used time-lapse ground-penetrating radar (GPR) surveys in conjunction with automatized single-ring infiltration experiments to create three-dimensional (3D) representations of infiltrated water. In total we established three 100 cm × 100 cm GPR grids and used differenced radargrams from pre- and post-infiltration surveys to detect wetting patterns. The analyzed time-lapse GPR surveys revealed the linkage between nonuniform flow and heterogeneous soil structures and plant roots. At the first experimental area, subsurface coarse gravels acted as capillary barriers that concentrated flow into narrow pathways via funneled flow. At the second experimental area, the interpolated 3D patterns closely matched direct observation of dyed patterns, thereby validating the applied protocol. They also highlighted the important role of plant roots in facilitating preferential water movement through the subsurface. The protocol presented in this study represents a valuable tool for improving the hydraulic characterization of highly heterogeneous soils, while also alleviating some of the excessive experimental efforts currently needed to detect preferential flow pathways in the field

BEST-WR: An adapted algorithm for the hydraulic characterization of hydrophilic and water-repellent soils

Water-repellent soils usually experience water flow impedance during the early stage of a wetting process followed by progressive increase of infiltration rate. Current infiltration models are not formulated to describe this peculiar process. Similarly, simplified methods of soil hydraulic characterization (e.g., BEST) are not equipped to handle water-repellent soils. Here, we present an adaptation of the BEST method, named BEST-WR, for the hydraulic characterization of soils at any stage of water-repellency. We modified the Haverkamp explicit transient infiltration model, included in BEST for modeling infiltration data, by embedding a scaling factor describing the rate of attenuation of infiltration rate due to water repellency. The new model was validated using analytically generated data, involving soils with different texture and a dataset that included data from 60 single-ring infiltration tests. The scaling factor was used as a new index to assess soil water repellency in a Mediterranean wooded grassland, where the scattered evergreen oak trees induced more noticeable water repellency under the canopies as compared to the open spaces. The new index produced results in line with those obtained using the water drop penetration time test, which is one of the most widely test applied for quantifying soil water repellency persistence. Finally, we used BEST-WR to determine the hydraulic characteristic curves under both hydrophilic and hydrophobic conditions

A scaling procedure for straightforward computation of sorptivity

This research has been supported by the Agence Nationale de la Recherche (grant no. ANR-17-CE04-010).Sorptivity is a parameter of primary importance in the study of unsaturated flow in soils. This hydraulic parameter is required to model water infiltration into vertical soil profiles. Sorptivity can be directly estimated from the soil hydraulic functions (water retention and hydraulic conductivity curves), using the integral formulation of Parlange (1975). However, calculating sorptivity in this manner requires the prior determination of the soil hydraulic diffusivity and its numerical integration between initial and final saturation degrees, which may be difficult in some situations (e.g., coarse soil with diffusivity functions that are quasi-infinite close to saturation). In this paper, we present a procedure to compute sorptivity using a scaling parameter, cp, that corresponds to the sorptivity of a unit soil (i.e., unit values for all parameters and zero residual water content) that is utterly dry at the initial state and saturated at the final state. The cp parameter was computed numerically and analytically for five hydraulic models: delta (i.e., Green and Ampt), Brooks and Corey, van Genuchten–Mualem, van Genuchten–Burdine, and Kosugi. Based on the results, we proposed brand new analytical expressions for some of the models and validated previous formulations for the other models. We also tabulated the output values so that they can easily be used to determine the actual sorptivity value for any case. At the same time, our numerical results showed that the relation between cp and the hydraulic shape parameters strongly depends on the chosen model. These results highlight the need for careful selection of the proper model for the description of the water retention and hydraulic conductivity functions when estimating sorptivity.French National Research Agency (ANR) European Commission ANR-17-CE04-01

A scaling procedure for straightforward computation of sorptivity

Sorptivity is a parameter of primary importance in the study of unsaturated flow in soils. This hydraulic parameter is required to model water infiltration into vertical soil profiles. Sorptivity can be directly estimated from the soil hydraulic functions (water retention and hydraulic conductivity curves), using the integral formulation of . However, calculating sorptivity in this manner requires the prior determination of the soil hydraulic diffusivity and its numerical integration between initial and final saturation degrees, which may be difficult in some situations (e.g., coarse soil with diffusivity functions that are quasi-infinite close to saturation). In this paper, we present a procedure to compute sorptivity using a scaling parameter, cp, that corresponds to the sorptivity of a unit soil (i.e., unit values for all parameters and zero residual water content) that is utterly dry at the initial state and saturated at the final state. The cp parameter was computed numerically and analytically for five hydraulic models: Delta (i.e., Green and Ampt), Brooks and Corey, van Genuchten-Mualem, van Genuchten-Burdine, and Kosugi. Based on the results, we proposed brand new analytical expressions for some of the models and validated previous formulations for the other models. We also tabulated the output values so that they can easily be used to determine the actual sorptivity value for any case. At the same time, our numerical results showed that the relation between cp and the hydraulic shape parameters strongly depends on the chosen model. These results highlight the need for careful selection of the proper model for the description of the water retention and hydraulic conductivity functions when estimating sorptivity

Mixed formulation for an easy and robust numerical computation of sorptivity

Sorptivity is one of the most important parameters for the quantification of water infiltration into soils. proposed a specific formulation to derive sorptivity as a function of the soil water retention and hydraulic conductivity functions, as well as initial and final soil water contents. However, this formulation requires the integration of a function involving hydraulic diffusivity, which may be undefined or present numerical difficulties that cause numerical misestimations. In this study, we propose a mixed formulation that scales sorptivity and splits the integrals into two parts: the first term involves the scaled degree of saturation, while the second involves the scaled water pressure head. The new mixed formulation is shown to be robust and well-suited to any type of hydraulic function - even with infinite hydraulic diffusivity or positive air-entry water pressure heads - and any boundary condition, including infinite initial water pressure head, h→-∞. Lastly, we show the benefits of using the proposed formulation for modeling water into soil with analytical models that use sorptivity. Copyright

Burnout among surgeons before and during the SARS-CoV-2 pandemic: an international survey

Background: SARS-CoV-2 pandemic has had many significant impacts within the surgical realm, and surgeons have been obligated to reconsider almost every aspect of daily clinical practice. Methods: This is a cross-sectional study reported in compliance with the CHERRIES guidelines and conducted through an online platform from June 14th to July 15th, 2020. The primary outcome was the burden of burnout during the pandemic indicated by the validated Shirom-Melamed Burnout Measure. Results: Nine hundred fifty-four surgeons completed the survey. The median length of practice was 10 years; 78.2% included were male with a median age of 37 years old, 39.5% were consultants, 68.9% were general surgeons, and 55.7% were affiliated with an academic institution. Overall, there was a significant increase in the mean burnout score during the pandemic; longer years of practice and older age were significantly associated with less burnout. There were significant reductions in the median number of outpatient visits, operated cases, on-call hours, emergency visits, and research work, so, 48.2% of respondents felt that the training resources were insufficient. The majority (81.3%) of respondents reported that their hospitals were included in the management of COVID-19, 66.5% felt their roles had been minimized; 41% were asked to assist in non-surgical medical practices, and 37.6% of respondents were included in COVID-19 management. Conclusions: There was a significant burnout among trainees. Almost all aspects of clinical and research activities were affected with a significant reduction in the volume of research, outpatient clinic visits, surgical procedures, on-call hours, and emergency cases hindering the training. Trial registration: The study was registered on clicaltrials.gov "NCT04433286" on 16/06/2020

GWAS meta-analysis of over 29,000 people with epilepsy identifies 26 risk loci and subtype-specific genetic architecture

Epilepsy is a highly heritable disorder affecting over 50 million people worldwide, of which about one-third are resistant to current treatments. Here we report a multi-ancestry genome-wide association study including 29,944 cases, stratified into three broad categories and seven subtypes of epilepsy, and 52,538 controls. We identify 26 genome-wide significant loci, 19 of which are specific to genetic generalized epilepsy (GGE). We implicate 29 likely causal genes underlying these 26 loci. SNP-based heritability analyses show that common variants explain between 39.6% and 90% of genetic risk for GGE and its subtypes. Subtype analysis revealed markedly different genetic architectures between focal and generalized epilepsies. Gene-set analyses of GGE signals implicate synaptic processes in both excitatory and inhibitory neurons in the brain. Prioritized candidate genes overlap with monogenic epilepsy genes and with targets of current antiseizure medications. Finally, we leverage our results to identify alternate drugs with predicted efficacy if repurposed for epilepsy treatment

Genome-wide identification and phenotypic characterization of seizure-associated copy number variations in 741,075 individuals

Copy number variants (CNV) are established risk factors for neurodevelopmental disorders with seizures or epilepsy. With the hypothesis that seizure disorders share genetic risk factors, we pooled CNV data from 10,590 individuals with seizure disorders, 16,109 individuals with clinically validated epilepsy, and 492,324 population controls and identified 25 genome-wide significant loci, 22 of which are novel for seizure disorders, such as deletions at 1p36.33, 1q44, 2p21-p16.3, 3q29, 8p23.3-p23.2, 9p24.3, 10q26.3, 15q11.2, 15q12-q13.1, 16p12.2, 17q21.31, duplications at 2q13, 9q34.3, 16p13.3, 17q12, 19p13.3, 20q13.33, and reciprocal CNVs at 16p11.2, and 22q11.21. Using genetic data from additional 248,751 individuals with 23 neuropsychiatric phenotypes, we explored the pleiotropy of these 25 loci. Finally, in a subset of individuals with epilepsy and detailed clinical data available, we performed phenome-wide association analyses between individual CNVs and clinical annotations categorized through the Human Phenotype Ontology (HPO). For six CNVs, we identified 19 significant associations with specific HPO terms and generated, for all CNVs, phenotype signatures across 17 clinical categories relevant for epileptologists. This is the most comprehensive investigation of CNVs in epilepsy and related seizure disorders, with potential implications for clinical practice