Comparison of dimensionality reduction methods to predict genomic breeding values for carcass traits in pigs

A significant contribution of molecular genetics is the direct use of DNA information to identify genetically superior individuals. With this approach, genome-wide selection (GWS) can be used for this purpose. GWS consists of analyzing a large number of single nucleotide polymorphism markers widely distributed in the genome; however, because the number of markers is much larger than the number of genotyped individuals, and such markers are highly correlated, special statistical methods are widely required. Among these methods, independent component regression, principal component regression, partial least squares, and partial principal components stand out. Thus, the aim of this study was to propose an application of the methods of dimensionality reduction to GWS of carcass traits in an F2 (Piau x commercial line) pig population. The results show similarities between the principal and the independent component methods and provided the most accurate genomic breeding estimates for most carcass traits in pigs

Estimating additive and dominance variances for complex traits in pigs combining genomic and pedigree information

Knowledge of dominance effects should improve ge-netic evaluations, provide the accurate selection of purebred animals, and enable better breeding strategies, including the exploitation of het-erosis in crossbreeds. In this study, we combined genomic and pedi-gree data to study the relative importance of additive and dominance genetic variation in growth and carcass traits in an F2 pig population. Two GBLUP models were used, a model without a polygenic effect (ADM) and a model with a polygenic effect (ADMP). Additive effects played a greater role in the control of growth and carcass traits than did dominance effects. However, dominance effects were important for all traits, particularly in backfat thickness. The narrow-sense and broad-sense heritability estimates for growth (0.06 to 0.42, and 0.10 to 0.51, respectively) and carcass traits (0.07 to 0.37, and 0.10 to 0.76, respec-tively) exhibited a wide variation. The inclusion of a polygenic effect in the ADMP model changed the broad-sense heritability estimates only for birth weight and weight at 21 days of age

Efeitos de três adubos fosfatados sobre a acidez de dois solos do município de Piracicaba

An experiment was carried out, in pots, to study the effects of phosphate fertilizers (ordinary superphosphate, thermal phosphate and rok phosphate) on both, the pH and the amount of exchangeable Al3+ in two soils (Orthic Haplacrox and Orthic Hapludent) from the municipality of Piracicaba, State of São Paulo, Brazil. Thermal phosphate reduced the active and exchangeable acidities in both soils. Rock phosphate and ordinary superphosphate reduced the exchangeable acidity but caused very little effect on the pH of the soils .Foi realizado um ensaio em vasos para se estudar os efeitos dos fertilizantes fosfatados (Superfosfato simples, Termofosfato e Fosforita de Olinda) sobre o pH e o teor de Al3+ trocável de dois solos (Orthic Haplacrox e Orthic Hapludent) do município de Piracicaba-SP. O Termofosfato reduziu tanto a acidez ativa quanto a acidez trocável em ambos os solos. A fosforita de Olinda e o Superfosfato simples reduziram a acidez de troca mas afetaram muito pouco o pH dos dois solos

Highly Endemic, Waterborne Toxoplasmosis in North Rio de Janeiro State, Brazil

In Campos dos Goytacazes, northern Rio de Janeiro state, Brazil, reports of uveitis consistent with toxoplasmosis led to a survey of the prevalence and risk factors for Toxoplasma gondii infection in 1997–1999. The survey population was selected randomly from schools, randomly chosen communities, and an army battalion. Serum samples from 1,436 persons were tested. With results adjusted for age, 84% of the population in the lower socioeconomic group was seropositive, compared with 62% and 23% of the middle and upper socioeconomic groups, respectively (p<0.001). When multivariate analysis was performed, drinking unfiltered water was found to increase the risk of seropositivity for the lower socioeconomic (odds ratio [OR]: 3.0, 95% confidence interval [CI] 1.3 to 6.9) and middle socioeconomic (OR: 1.7, 95% CI 1.2 to 2.3) populations. We also found a high T. gondii seroprevalence in this Brazilian community. Drinking unfiltered water increased the risk of T. gondii seropositivity, indicating the potential importance of oocyst transmission in water in this region

Hydrological influence on the evolution of a subtropical mangrove ecosystem during the late Holocene from Babitonga Bay, Brazil

Mangroves are key ecosystems which respond to global changes in tropical and subtropical regions worldwide. We describe late Holocene mangroves that established close to the southernmost limit (28°S) for this type of ecosystem in South America. Our findings are based on a C dated core obtained from Babitonga Bay, Santa Catarina State, Brazil (26°12′S, 48°33′W). Analysis of palynology, sedimentary facies, isotopic and elemental data shows that mangrove establishment took place ~500 yrs. B.C.E., following an increase in humidity, and expanded further during the Roman Warm Period and at the end of Dark Age Cold Period. Mangrove and precipitation proxies records appear to be sensitive to rainfall patterns imposed both by the expansion/retraction of the Intertropical Convergence Zone and also the interaction with the South Atlantic Subtropical Anticyclone which affects coastal region due to sea surface temperature variations.The authors thank the Coastal Dynamic Laboratory (LADIC-UFPA) , C-14 Laboratory of the Center for Nuclear Energy in Agriculture (CENA-USP) , University of Joinville (UNIVILLE) and Radiocarbon Laboratory (LAC-UFF) for all infrastructure and support. We also thank three anonymous Reviewers and Prof. H. Falcon-Lang for their constructive comments. The first and third author thanks Brazilian Council for Technology and Science-CNPq for fellowship (process 131813/2016-1 , 165911/2015-8 and 305074/2017-2 ). This study was financed by CNPq ( 445111/2014-3 , 405060/2013- 0 ) and FAPESP ( 2011/00995-7 , 2017/03304-1, and 2020/13715-1 ). This study also was financed in part by the Coordenação de Aperfeiçoamento de Pessoal Nível Superior – Brazil (CAPES) – Finance Code 001

A way to evaluate the peculiarities of drug information centers in university hospitals

The aim of this work was to identify the characteristics of the drug information provided by the Drug Information Center (DIC) of a university hospital. A cross-sectional study was conducted, identifying the profile of information requests (IRs) from January 2008 to December 2009, before and after restructuring. Several parameters were evaluated. The results revealed that this DIC showed a mean of 5.5 IR/month in 2008 and 20.3 in 2009. The majority of IRs came from medical residents (22.7 %) in 2008 and from pharmacists (32.5 %) in 2009. The most recurrent types of IRs were administration route/mode (16.8 %) in 2008 and drug stability (13.1 %) in 2009. The results revealed the importance of the DIC in the hospital, and the restructuring experience could be of help to other DICs in Brazil.Colegio de Farmacéuticos de la Provincia de Buenos Aire

Effect of hofmeister ions on transport properties of aqueous solutions of sodium hyaluronate

Tracer diffusion coefficients obtained from the Taylor dispersion technique at 25.0◦C were measured to study the influence of sodium, ammonium and magnesium salts at 0.01 and 0.1 mol dm−3 on the transport behavior of sodium hyaluronate (NaHy, 0.1%). The selection of these salts was based on their position in Hofmeister series, which describe the specific influence of different ions (cations and anions) on some physicochemical properties of a system that can be interpreted as a salting-in or salting-out effect. In our case, in general, an increase in the ionic strength (i.e., concentrations at 0.01 mol dm−3 ) led to a significant decrease in the limiting diffusion coefficient of the NaHy 0.1%, indicating, in those circumstances, the presence of salting-in effects. However, the opposite effect (salting-out) was verified with the increase in concentration of some salts, mainly for NH4SCN at 0.1 mol dm−3 . In this particular salt, the cation is weakly hydrated and, consequently, its presence does not favor interactions between NaHy and water molecules, promoting, in those circumstances, less resistance to the movement of NaHy and thus to the increase of its diffusion (19%). These data, complemented by viscosity measurements, permit us to have a better understanding about the effect of these salts on the transport behaviour of NaHy. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.Fundacao para a Ciencia e a Tecnologia (FCT) through COMPETE Programme (Operational Programme for Competitiveness) [UIDB/QUI/00313/2020]; Ministry of Education, Youth and Sports of the Czech Republic DKRVO [RP/CPS/2020/003]Ministerstvo Školství, Mládeže a Tělovýchovy, MŠMT: RP/CPS/2020/003; Fundação para a Ciência e a Tecnologia, FCT: UIDB/QUI/00313/202

Systematic review of reverse vaccinology and immunoinformatics data for non-viral sexually transmitted infections

Abstract Sexually Transmitted Infections (STIs) are a public health burden rising in developed and developing nations. The World Health Organization estimates nearly 374 million new cases of curable STIs yearly. Global efforts to control their spread have been insufficient in fulfilling their objective. As there is no vaccine for many of these infections, these efforts are focused on education and condom distribution. The development of vaccines for STIs is vital for successfully halting their spread. The field of immunoinformatics is a powerful new tool for vaccine development, allowing for the identification of vaccine candidates within a bacterium’s genome and allowing for the design of new genome-based vaccine peptides. The goal of this review was to evaluate the usage of immunoinformatics in research focused on non-viral STIs, identifying fields where research efforts are concentrated. Here we describe gaps in applying these techniques, as in the case of Treponema pallidum and Trichomonas vaginalis