Integrated genomic characterization of pancreatic ductal adenocarcinoma

We performed integrated genomic, transcriptomic, and proteomic profiling of 150 pancreatic ductal adenocarcinoma (PDAC) specimens, including samples with characteristic low neoplastic cellularity. Deep whole-exome sequencing revealed recurrent somatic mutations in KRAS, TP53, CDKN2A, SMAD4, RNF43, ARID1A, TGFβR2, GNAS, RREB1, and PBRM1. KRAS wild-type tumors harbored alterations in other oncogenic drivers, including GNAS, BRAF, CTNNB1, and additional RAS pathway genes. A subset of tumors harbored multiple KRAS mutations, with some showing evidence of biallelic mutations. Protein profiling identified a favorable prognosis subset with low epithelial-mesenchymal transition and high MTOR pathway scores. Associations of non-coding RNAs with tumor-specific mRNA subtypes were also identified. Our integrated multi-platform analysis reveals a complex molecular landscape of PDAC and provides a roadmap for precision medicine

Melhoramento da cana-de-açúcar: IX: evaluation of clones obtained in 1980 and 1981 hybridizations, selected in Ribeirão Preto region, state of São Paulo, Brazil Sugarcane breeding: IX

Testaram-se doze clones de cana-de-açúcar, obtidos de hibridações realizadas em Camamu (BA), em 1980 e 1981, em três ensaios na região de Ribeirão Preto (SP). Além do delineamento em blocos ao acaso, com seis repetições, efetuou-se a análise estatística com a média das três colheitas (1.&deg;, 2.&deg; e 3.&deg; cortes), tomando as variedades SP70-1143, NA56-79 e IAC64-257 como testemunhas-padrão. Entre os caracteres agroindustriais avaliados estão: a produtividade de cana e açúcar, pol % cana, fibra %, intensidade de florescimento, índice de infestação de broca-do-colmo (Diatraea saccharalis) e a reação à ferrugem (Puccinia melanocephala). O melhor clone foi o IAC80-2094, indicado para início de safra, com boa produção e bom teor de fibra, mas de florescimento intenso e suscetibilidade à ferrugem. O IAC81-2004 também apresentou bons resultados, caracterizando-se como precoce, com bom teor de fibra e boa resistência à broca-do-colmo. Em condições naturais de campo, porém, sua desvantagem é a grande incidência de "chicotes" de carvão. Apesar de ambos os clones apresentarem características agroindustriais vantajosas, desaconselha-se que sejam incluídos no estudo de manejo parietal para outras regiões paulistas, em função dos problemas fitossanitários citados.<br>A number of sugarcane clones obtained in crosses made in 1980 and 1981, was tested in three locations with Oxisol soils at Ribeirão Preto region. The commercial varieties SP70-1143, NA56-79 and IAC64-257 were used as controls in trials and evaluated for agricultural and industrial traits on the average of three harvests. The best clone in the experiments was IAC80-2094, which has been indicated for early harvest period with good yield and fiber content, but with heavy tasseling and susceptibility to rust. Other early maturing clone was IAC81-2004, which showes good fiber content and stem borer tolerance, however it does show, in natural conditions in the field, frequent symptoms of rust. Thus, in spite of both clones show superior agricultural and industrial traits, these problems of diseases above mentioned do not recommend their inclusions in the varietal management for other regions in the State of São Paulo, Brazil

Properties and performance of the prototype instrument for the Pierre Auger Observatory

Copyright © 2003 Elsevier B.V. All rights reserved.Construction of the first stage of the Pierre Auger Observatory has begun. The aim of the Observatory is to collect unprecedented information about cosmic rays above 1018 eV. The first phase of the project, the construction and operation of a prototype system, known as the engineering array, has now been completed. It has allowed all of the sub-systems that will be used in the full instrument to be tested under field conditions. In this paper, the properties and performance of these sub-systems are described and their success illustrated with descriptions of some of the events recorded thus far.Auger Collaboration, ..., J. A. Bellido, ..., R. W. Clay, ..., B. R. Dawson, ..., G. J. Thornton, ..., N. R. Wild, et al.http://www.elsevier.com/wps/find/journaldescription.cws_home/505701/description#descriptio

AUGER FD: Detector response to simulated showers and real event topologies

The performance of the Auger Fluorescence telescope is discussed on the basis of a mass production chain. In order to get a realistic estimate of the detector resolution, a large number of fully simulated CORSIKA showers have been used for this study. The propagation through the atmosphere and the detector response are taken into account and simulated in detail. Results for the the case of monocular reconstruction are presented here. No quality cuts for the event reconstruction have been applied so far. Finally, a schematic overview of the expected event topologies is given together with the display of a real event recently collected