Artfully Exploring Quantum Physics

The Art and Light Project has successfully brought together artists and scientists from across the Dunedin community and created a forum for dialogue and understanding. Some beautiful art has been created which culminated in a well-attended exhibition at the Otago Museum. More than 60 years ago, C.P. Snow wrote4 in his wonderful little book of warning, The Two Cultures, that “There seems to be no place where the cultures meet. I am not going to waste time saying that this is a pity. It is much worse than that.” This exercise has attempted to bridge a little of that gap between the cultures of science and the arts. Moreover, I think that both artists and scientists alike would agree that the distinction is an artificial one. To illustrate this we have tried to express in this article the similarities in method and thought between creation—for they are both creative processes—in art and science.Moreover, the science we have tried to portray through this art and this article can be difficult to grasp. The exhibition itself has been a vehicle that has enabled us to engage with an audience that would not perhaps normally be exposed to quantum science. As a public outreach and educational exercise, this project has therefore been a resounding success. More importantly, it was a lot of fun

Reliability and validity of subjective measures of aerobic intensity in adults with spinal cord injury: a systematic review

Objective: To systematically synthesize and appraise research regarding test-retest reliability or criterion validity of subjective measures for assessing aerobic exercise intensity in adults with spinal cord injury (SCI). Data Sources: Electronic databases (Pubmed, PsychINFO, SPORTDiscus, EMBASE and CINAHL) were searched from inception to 1-1-2016. Study Selection: Studies involving at least 50% of participants with SCI who performed an aerobic exercise test that included measurement of subjective and objective intensity based on test-retest reliability or criterion validity protocols. Data Extraction: Characteristics were extracted on study design, measures, participants, protocols, and results. Each study was evaluated for risk of bias based on strength of the study design and a quality checklist score (COnsensus-based Standards for the selection of health Measurement Instruments [COSMIN]). Data Synthesis: The seven eligible studies (one for reliability, six for validity) evaluated overall, peripheral and/or central ratings of perceived exertion on a 6-20 scale (RPE 6-20). No eligible studies were identified for other subjective intensity measures. The evidence for reliability and validity were synthesized separately for each measure, and assessed using Grading of Recommendations Assessment, Development, and Evaluation (GRADE). Overall, very low GRADE confidence ratings were established for reliability and validity evidence generalizable to the entire population with SCI and various upper-body and lower-body modalities. There was low confidence for the evidence showing that overall RPE 6-20 has acceptable validity for adults with SCI and high fitness levels performing moderate to vigorous-intensity upper-body aerobic exercise. Conclusions: Health care professionals and scientists need to be aware of the very low to low confidence in the evidence, which currently prohibits a strong clinical recommendation for the use of subjective measures for assessing aerobic exercise intensity in adults with SCI. However, a tentative, conditional recommendation regarding overall RPE 6-20 seems applicable depending on participants’ fitness level as well as the exercise intensity and modality used

Estimates of hypolimnetic oxygen deficits in ponds

Shallow tropical integrated culture ponds in the Pearl River Delta, China, have been found to stratify almost daily, with high organic loadings and dense algal growth. The dissolved oxygen (DO) concentration is super-saturated in the epilimnion and is under 2 mg/l in the hypolimnion (>1m). The compensation depth corresponds to twice the Secchi disk depth ranging from 50 to 80cm. As a result, little or no net oxygen is produced in the hypolimnion (>1m). The low DO concentration in the hypolimnion causes organic materials, such as unused organic wastes and senescent algae cells, to be incompletely oxidized, since the rate of oxygen consumption by oxidable matter in water is dependent on the dissolved oxygen concentration in water. This material becomes the source of hypolimnetic oxygen deficits (HOD) which can drive whole pond DO to a dangerously low level, should sudden destratification occur. An improved estimate of hypolimnetic oxygen deficits is introduced in this article, and the advantages of this method are discussed.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72126/1/j.1365-2109.1989.tb00341.x.pd

Computational Physics on Graphics Processing Units

The use of graphics processing units for scientific computations is an emerging strategy that can significantly speed up various different algorithms. In this review, we discuss advances made in the field of computational physics, focusing on classical molecular dynamics, and on quantum simulations for electronic structure calculations using the density functional theory, wave function techniques, and quantum field theory.Comment: Proceedings of the 11th International Conference, PARA 2012, Helsinki, Finland, June 10-13, 201

Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue

The genetic regulation of the human epigenome is not fully appreciated. Here we describe the effects of genetic variants on the DNA methylome in human lung based on methylation-quantitative trait loci (meQTL) analyses. We report 34,304 cis- and 585 trans-meQTLs, a genetic-epigenetic interaction of surprising magnitude, including a regulatory hotspot. These findings are replicated in both breast and kidney tissues and show distinct patterns: cis-meQTLs mostly localize to CpG sites outside of genes, promoters and CpG islands (CGIs), while trans-meQTLs are over-represented in promoter CGIs. meQTL SNPs are enriched in CTCF-binding sites, DNaseI hypersensitivity regions and histone marks. Importantly, four of the five established lung cancer risk loci in European ancestry are cis-meQTLs and, in aggregate, cis-meQTLs are enriched for lung cancer risk in a genome-wide analysis of 11,587 subjects. Thus, inherited genetic variation may affect lung carcinogenesis by regulating the human methylome

Velocity-space sensitivity of the time-of-flight neutron spectrometer at JET

The velocity-space sensitivities of fast-ion diagnostics are often described by so-called weight functions. Recently, we formulated weight functions showing the velocity-space sensitivity of the often dominant beam-target part of neutron energy spectra. These weight functions for neutron emission spectrometry (NES) are independent of the particular NES diagnostic. Here we apply these NES weight functions to the time-of-flight spectrometer TOFOR at JET. By taking the instrumental response function of TOFOR into account, we calculate time-of-flight NES weight functions that enable us to directly determine the velocity-space sensitivity of a given part of a measured time-of-flight spectrum from TOFOR

Relationship of edge localized mode burst times with divertor flux loop signal phase in JET

A phase relationship is identified between sequential edge localized modes (ELMs) occurrence times in a set of H-mode tokamak plasmas to the voltage measured in full flux azimuthal loops in the divertor region. We focus on plasmas in the Joint European Torus where a steady H-mode is sustained over several seconds, during which ELMs are observed in the Be II emission at the divertor. The ELMs analysed arise from intrinsic ELMing, in that there is no deliberate intent to control the ELMing process by external means. We use ELM timings derived from the Be II signal to perform direct time domain analysis of the full flux loop VLD2 and VLD3 signals, which provide a high cadence global measurement proportional to the voltage induced by changes in poloidal magnetic flux. Specifically, we examine how the time interval between pairs of successive ELMs is linked to the time-evolving phase of the full flux loop signals. Each ELM produces a clear early pulse in the full flux loop signals, whose peak time is used to condition our analysis. The arrival time of the following ELM, relative to this pulse, is found to fall into one of two categories: (i) prompt ELMs, which are directly paced by the initial response seen in the flux loop signals; and (ii) all other ELMs, which occur after the initial response of the full flux loop signals has decayed in amplitude. The times at which ELMs in category (ii) occur, relative to the first ELM of the pair, are clustered at times when the instantaneous phase of the full flux loop signal is close to its value at the time of the first ELM

Detectable clonal mosaicism and its relationship to aging and cancer

In an analysis of 31,717 cancer cases and 26,136 cancer-free controls from 13 genome-wide association studies, we observed large chromosomal abnormalities in a subset of clones in DNA obtained from blood or buccal samples. We observed mosaic abnormalities, either aneuploidy or copy-neutral loss of heterozygosity, of >2 Mb in size in autosomes of 517 individuals (0.89%), with abnormal cell proportions of between 7% and 95%. In cancer-free individuals, frequency increased with age, from 0.23% under 50 years to 1.91% between 75 and 79 years (P = 4.8 × 10(-8)). Mosaic abnormalities were more frequent in individuals with solid tumors (0.97% versus 0.74% in cancer-free individuals; odds ratio (OR) = 1.25; P = 0.016), with stronger association with cases who had DNA collected before diagnosis or treatment (OR = 1.45; P = 0.0005). Detectable mosaicism was also more common in individuals for whom DNA was collected at least 1 year before diagnosis with leukemia compared to cancer-free individuals (OR = 35.4; P = 3.8 × 10(-11)). These findings underscore the time-dependent nature of somatic events in the etiology of cancer and potentially other late-onset diseases

Effect of altitude on urinary leukotriene (LT) E4 excretion and airway responsiveness to histamine in children with atopic asthma

Contains fulltext : 21887___.PDF (publisher's version ) (Open Access