Ostracods from a Marmara Sea lagoon (Turkey) as tsunami indicators

This is the post print version of the article. The official published version can be obtained from the link below - Copyright @ Elsevier Ltd.A 352 cm long sediment core from Hersek Lagoon (Gulf of İzmit) was investigated for its ostracod species composition in order to evaluate the potential of ostracods to detect tsunami deposits in coastal environments. The Gulf of İzmit is the eastern bay of the Marmara Sea which is tectonically controlled by the North Anatolian Fault. Ostracod shells are rare in the lower third of the core, which probably represents a coastal wetland environment. According to radiocarbon dating of terrestrial plant remains, this unit was deposited between AD 500 and AD 800. Above, ostracod shells are abundant and dominantly monospecific, composed almost exclusively of the widespread brackish water ostracod Cyprideis torosa. This almost monospecific occurrence indicates the establishment and maintenance of the Hersek Lagoon after AD 800. Three distinct layers of mollusc shells and fragments contain ostracod shells of marine and to a lesser extent non-marine origin in addition to those of C. torosa. The shell layers are further characterized by significant maxima in total ostracod shell numbers. The high concentration of ostracod shells, the higher species numbers and the mixture of marine, lagoonal and non-marine ostracod shells shows that shell layers were formed as high-energy deposits resulting from tsunamis or large storms in the Marmara Sea. The partial occurrence of non-marine ostracod shells in the shell layers possibly indicates that tsunamis with extensive run-ups and significant backwash flows caused the high-energy deposits rather than large storms. The investigated sediments show that lagoonal ostracods can serve as good proxies for tsunamis or large storms through significant variations in total shell numbers, species numbers and the mixing of shells of different origin.Funding was provided by the European Union in the framework of the REL.I.E.F. (RELiable Information on Earthquake Faulting) project (EVG1-CT-2002-00069)

Genetic bottlenecks in agroforestry systems: results of tree nursery surveys in East Africa

Seedlings sourced through tree nurseries are expected to form an important component of future tree cover on farms. As such, the genetic composition of nursery seedlings is expected to impact on the productivity and sustainability of agroforestry ecosystems. By surveying current practices of nursery managers in five areas from Kenya, Tanzania and Uganda, we quantified parameters associated with the collection, production and distribution of tree germplasm in East Africa. Considerable variation for seed-propagated nursery species was observed in the number of maternal parents (mother trees) sampled to establish nursery lots, the quantity of seedlings raised in nursery lots and the projected number of clients for nursery lots. Current seed collection practice was the most obvious limiting bottleneck in delivering high levels of genetic diversity to farmers. In the 143 cases analysed, seed to establish nursery lots was collected from a mean of only 6.4 maternal parents. In 22% of cases, ursery lots were established from a single maternal parent. On average, each maternal parent produced sufficient progeny to provide all the seedlings received by an individual nursery client. Consequently, the potential impact on farm and landscape genetic diversity of possible non-randomisation of progeny within nurseries is serious. In two instances, pair-wise analysis of transformed data suggested significant differences between geographic areas in the projected number of clients for nursery lots. We discuss improved nursery practices likely to promote genetic diversity, in particular increased maternal parent sampling and germplasm exchang

Searching for a light Fermiophobic Higgs Boson at the Tevatron

We propose new production mechanisms for light fermiophobic Higgs bosons ($h_f$) with suppressed couplings to vector bosons ($V$) at the Fermilab Tevatron. These mechanisms (e.g. $qq'\to H^\pm h_f$) are complementary to the conventional process $qq'\to Vh_f$, which suffers from a strong suppression of $1/\tan^2\beta$ in realistic models with a $h_f$. The new mechanisms extend the coverage at the Tevatron Run II to the larger $\tan\beta$ region, and offer the possibility of observing new event topologies with up to 4 photons.Comment: 15 pages, including 5 eps-figure

Associated production of H^{\pm} and W^{\mp} in high-energy e+e- collisions in the Minimal Supersymmetric Standard Model

We study the associated production of the charged Higgs boson and W^{\pm} gauge boson in high energy e+e- collisions in the Minimal Supersymmetric Standard Model (MSSM). This associated production, which first arises at the one loop level, offers the possibility of producing the charged Higgs boson at the e+e- collider with mass more than half the center-of-mass energy, when the charged Higgs pair production is kinematically forbidden. We present analytic and numerical results for the cross section for e+e- --> W+ H- in the full MSSM, taking into account the previously uncalculated contributions from supersymmetric (SUSY) particles. We find that the contributions of the SUSY particles enhance the cross section over most of SUSY parameter space, especially when the SUSY particles are light, ~200 GeV. With favorable SUSY parameters, at small tan beta, this process can yield more than ten W^{\pm}H^{\mp} events for m_{H^{\pm}} <~ 350 GeV in 500 fb-1 at a 500 GeV e+e- collider, or m_{H^{\pm}} <~ 600 GeV in 1000 fb-1 at a 1000 GeV collider. 80% left-handed polarization of the e- beam improves these reaches to m_{H^{\pm}} <~ 375 GeV and m_{H^{\pm}} <~ 670 GeV, respectively.Comment: v2: 21 pages, 9 figures, comments on Higgs search bounds and new references added, and minor changes; v3: 23 pages, 11 figures, review of literature moved from introduction to new Sec.5 and 2 plots added, references added, typos corrected; v4: bug fixed in nu nubar H0 cross section (Fig.11), version to appear in PR

Reducing Zero-point Systematics in Dark Energy Supernova Experiments

We study the effect of filter zero-point uncertainties on future supernova dark energy missions. Fitting for calibration parameters using simultaneous analysis of all Type Ia supernova standard candles achieves a significant improvement over more traditional fit methods. This conclusion is robust under diverse experimental configurations (number of observed supernovae, maximum survey redshift, inclusion of additional systematics). This approach to supernova fitting considerably eases otherwise stringent mission calibration requirements. As an example we simulate a space-based mission based on the proposed JDEM satellite; however the method and conclusions are general and valid for any future supernova dark energy mission, ground or space-based.Comment: 30 pages,8 figures, 5 table, one reference added, submitted to Astroparticle Physic

New constraints on the mass composition of cosmic rays above 10^17 eV from Volcano Ranch measurements

Linsley used the Volcano Ranch array to collect data on the lateral distribution of showers produced by cosmic rays at energies above 10^17 eV. Very precise measurements of the steepness of the lateral distribution function were made on 366 events. The current availability of sophisticated hadronic interaction models has prompted an interpretation of the measurements. In this analysis we use the AIRES Monte Carlo code to generate showers, together with GEANT4 to simulate the detector response to ground particles. The results show that, with the assumption of a bi-modal proton and iron mix, iron is the dominant component of cosmic rays between 5x10^17 and 10^19 eV, assuming that hadronic interactions are well-described by QGSJET at this energy range.Comment: Submitted to Astropart. Phy

Structure and reactivity of Trypanosoma brucei pteridine reductase: inhibition by the archetypal antifolate methotrexate

The protozoan Trypanosoma brucei has a functional pteridine reductase (TbPTR1), an NADPH-dependent short-chain reductase that participates in the salvage of pterins, which are essential for parasite growth. PTR1 displays broad-spectrum activity with pterins and folates, provides a metabolic bypass for inhibition of the trypanosomatid dihydrofolate reductase and therefore compromises the use of antifolates for treatment of trypanosomiasis. Catalytic properties of recombinant TbPTR1 and inhibition by the archetypal antifolate methotrexate have been characterized and the crystal structure of the ternary complex with cofactor NADP(+) and the inhibitor determined at 2.2 Å resolution. This enzyme shares 50% amino acid sequence identity with Leishmania major PTR1 (LmPTR1) and comparisons show that the architecture of the cofactor binding site, and the catalytic centre are highly conserved, as are most interactions with the inhibitor. However, specific amino acid differences, in particular the placement of Trp221 at the side of the active site, and adjustment of the β6-α6 loop and α6 helix at one side of the substrate-binding cleft significantly reduce the size of the substrate binding site of TbPTR1 and alter the chemical properties compared with LmPTR1. A reactive Cys168, within the active site cleft, in conjunction with the C-terminus carboxyl group and His267 of a partner subunit forms a triad similar to the catalytic component of cysteine proteases. TbPTR1 therefore offers novel structural features to exploit in the search for inhibitors of therapeutic value against African trypanosomiasis

'To live and die [for] Dixie': Irish civilians and the Confederate States of America

Around 20,000 Irishmen served in the Confederate army in the Civil War. As a result, they left behind, in various Southern towns and cities, large numbers of friends, family, and community leaders. As with native-born Confederates, Irish civilian support was crucial to Irish participation in the Confederate military effort. Also, Irish civilians served in various supporting roles: in factories and hospitals, on railroads and diplomatic missions, and as boosters for the cause. They also, however, suffered in bombardments, sieges, and the blockade. Usually poorer than their native neighbours, they could not afford to become 'refugees' and move away from the centres of conflict. This essay, based on research from manuscript collections, contemporary newspapers, British Consular records, and Federal military records, will examine the role of Irish civilians in the Confederacy, and assess the role this activity had on their integration into Southern communities. It will also look at Irish civilians in the defeat of the Confederacy, particularly when they came under Union occupation. Initial research shows that Irish civilians were not as upset as other whites in the South about Union victory. They welcomed a return to normalcy, and often 'collaborated' with Union authorities. Also, Irish desertion rates in the Confederate army were particularly high, and I will attempt to gauge whether Irish civilians played a role in this. All of the research in this paper will thus be put in the context of the Drew Gilpin Faust/Gary Gallagher debate on the influence of the Confederate homefront on military performance. By studying the Irish civilian experience one can assess how strong the Confederate national experiment was. Was it a nation without a nationalism

Phenomenology of flavor-mediated supersymmetry breaking

The phenomenology of a new economical SUSY model that utilizes dynamical SUSY breaking and gauge-mediation (GM) for the generation of the sparticle spectrum and the hierarchy of fermion masses is discussed. Similarities between the communication of SUSY breaking through a messenger sector, and the generation of flavor using the Froggatt-Nielsen (FN) mechanism are exploited, leading to the identification of vector-like messenger fields with FN fields, and the messenger U(1) as a flavor symmetry. An immediate consequence is that the first and second generation scalars acquire flavor-dependent masses, but do not violate FCNC bounds since their mass scale, consistent with effective SUSY, is of order 10 TeV. We define and advocate a minimal flavor-mediated model (MFMM), recently introduced in the literature, that successfully accommodates the small flavor-breaking parameters of the standard model using order one couplings and ratios of flavon field vevs. The mediation of SUSY breaking occurs via two-loop log-enhanced GM contributions, as well as several one-loop and two-loop Yukawa-mediated contributions for which we provide analytical expressions. The MFMM is parameterized by a small set of masses and couplings, with values restricted by several model constraints and experimental data. The next-to-lightest sparticle (NLSP) always has a decay length that is larger than the scale of a detector, and is either the lightest stau or the lightest neutralino. Similar to ordinary GM models, the best collider search strategies are, respectively, inclusive production of at least one highly ionizing track, or events with many taus plus missing energy. In addition, D^0 - \bar{D}^0 mixing is also a generic low energy signal. Finally, the dynamical generation of the neutrino masses is briefly discussed.Comment: 54 pages, LaTeX, 8 figure