353 research outputs found
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions
Neural connectivity at the cellular and mesoscopic level appears very
specific and is presumed to arise from highly specific developmental
mechanisms. However, there are general shared features of connectivity in
systems as different as the networks formed by individual neurons in
Caenorhabditis elegans or in rat visual cortex and the mesoscopic circuitry of
cortical areas in the mouse, macaque, and human brain. In all these systems,
connection length distributions have very similar shapes, with an initial large
peak and a long flat tail representing the admixture of long-distance
connections to mostly short-distance connections. Furthermore, not all
potentially possible synapses are formed, and only a fraction of axons (called
filling fraction) establish synapses with spatially neighboring neurons. We
explored what aspects of these connectivity patterns can be explained simply by
random axonal outgrowth. We found that random axonal growth away from the soma
can already reproduce the known distance distribution of connections. We also
observed that experimentally observed filling fractions can be generated by
competition for available space at the target neurons--a model markedly
different from previous explanations. These findings may serve as a baseline
model for the development of connectivity that can be further refined by more
specific mechanisms.Comment: 31 pages (incl. supplementary information); Cerebral Cortex Advance
Access published online on May 12, 200
A mathematical framework for modelling axon guidance
In this paper, a simulation tool for modeling axon guidance is presented. A mathematical framework in which a wide range of models can been implemented has been developed together with efficient numerical algorithms. In our
framework, models can be defined that consist of concentration fields of guidance molecules in combination with finite-dimensional state vectors. These vectors
can characterize migrating growth cones, target neurons that release guidance molecules, or other cells that act as sources of membrane-bound or diffusible guidance
molecules. The underlying mathematical framework is presented as well as the numerical methods to solve them. The potential applications of our simulation tool are illustrated with a number of examples, including a model of topographic mapping
Random axon outgrowth and synaptic competition generate realistic connection lengths and filling fractions
Biologically plausible multi-dimensional reinforcement learning in neural networks
How does the brain learn to map multi-dimensional sensory inputs to multi-dimensional motor outputs when it can only observe single rewards for the coordinated outputs of the whole network of neurons that make up the brain? We introduce Multi-AGREL, a novel, biologically plausible multi-layer neural network model for multi-dimensional reinforcement learning. We demonstrate that Multi-AGREL can learn non-linear mappings from inputs to multi-dimensional outputs by using only scalar reward feedback. We further show that in Multi-AGREL, the changes in the connection weights follow the gradient that minimizes global prediction error, and that all information required for synaptic plasticity is locally present
Independently outgrowing neurons with a geometric synapse formation model develop realistic network connectivity patterns with small-world properties
Genetic contributions to long-range temporal correlations in ongoing oscillations
The amplitude fluctuations of ongoing oscillations in the electroencephalographic (EEG) signal of the human brain show autocorrelations that decay slowly and remain significant at time scales up to tens of seconds. We call these long-range temporal correlations (LRTC). Abnormal LRTC have been observed in several brain pathologies, but it has remained unknown whether genetic factors influence the temporal correlation structure of ongoing oscillations. We recorded the ongoing EEG during eyes-closed rest in 390 monozygotic and dizygotic twins and investigated the temporal structure of ongoing oscillations in the alpha- and beta-frequency bands using detrended fluctuation analysis (DFA). The strength of LRTC was more highly correlated in monozygotic than in dizygotic twins. Statistical analysis attributed up to ∼60% of the variance in DFA to genetic factors, indicating a high heritability for the temporal structure of amplitude fluctuations in EEG oscillations. Importantly, the DFA and EEG power were uncorrelated. LRTC in ongoing oscillations are robust, heritable, and independent of power, suggesting that LRTC and oscillation power are governed by distinct biophysical mechanisms and serve different functions in the brain. We propose that the DFA method is an important complement to classical spectral analysis in fundamental and clinical research on ongoing oscillations. Copyright © 2007 Society for Neuroscience
Mathematical modelling and numerical simulation of the morphological development of neurons
BACKGROUND: The morphological development of neurons is a very complex process involving both genetic and environmental components. Mathematical modelling and numerical simulation are valuable tools in helping us unravel particular aspects of how individual neurons grow their characteristic morphologies and eventually form appropriate networks with each other. METHODS: A variety of mathematical models that consider (1) neurite initiation (2) neurite elongation (3) axon pathfinding, and (4) neurite branching and dendritic shape formation are reviewed. The different mathematical techniques employed are also described. RESULTS: Some comparison of modelling results with experimental data is made. A critique of different modelling techniques is given, leading to a proposal for a unified modelling environment for models of neuronal development. CONCLUSION: A unified mathematical and numerical simulation framework should lead to an expansion of work on models of neuronal development, as has occurred with compartmental models of neuronal electrical activity
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