Roe deer (Capreolus capreolus) are a novel potential reservoir for human visceral leishmaniasis in the Emilia-Romagna region of northeastern Italy

Leishmaniasis is a complex human disease caused by intracellular parasites of the genus Leishmania, predominantly transmitted by the bite of sand flies. In Italy, leishmaniasis is caused exclusively by Leishmania infantum, responsible for the human and canine visceral leishmaniases (HVL and CVL, respectively). Within the Emilia-Romagna region, two different foci are active in the municipalities of Pianoro and Valsamoggia (both in the province of Bologna). Recent molecular studies indicated that L. infantum strains circulating in dogs and humans are different, suggesting that there is an animal reservoir other than dogs for human visceral leishmaniasis in the Emilia-Romagna region. In this work, we analyzed specimens from wild animals collected during hunts or surveillance of regional parks near active foci of human visceral leishmaniasis for L. infantum infection in the province of Bologna. Out of 70 individuals analyzed, 17 (24%) were positive for L. infantum. The infection prevalence in hedgehogs (Erinaceus europaeus), roe deer (Capreolus capreolus), badgers (Meles meles), and bank voles (Myodes glareolus) was 80, 33, 25, and 11%, respectively. To distinguish the two strains of L. infantum we have developed a nested PCR protocol optimized for animal tissues. Our results demonstrated that most (over 90%) of L. infantum infections in roe deer were due to the strain circulating in humans in the Emilia-Romagna region

Viral discovery and diversity in trypanosomatid protozoa with a focus on relatives of the human parasite <i>Leishmania</i>.

Knowledge of viral diversity is expanding greatly, but many lineages remain underexplored. We surveyed RNA viruses in 52 cultured monoxenous relatives of the human parasite &lt;i&gt;Leishmania&lt;/i&gt; ( &lt;i&gt;Crithidia&lt;/i&gt; and &lt;i&gt;Leptomonas&lt;/i&gt; ), as well as plant-infecting &lt;i&gt;Phytomonas&lt;/i&gt; &lt;i&gt;Leptomonas pyrrhocoris&lt;/i&gt; was a hotbed for viral discovery, carrying a virus (Leptomonas pyrrhocoris ostravirus 1) with a highly divergent RNA-dependent RNA polymerase missed by conventional BLAST searches, an emergent clade of tombus-like viruses, and an example of viral endogenization. A deep-branching clade of trypanosomatid narnaviruses was found, notable as &lt;i&gt;Leptomonas seymouri&lt;/i&gt; bearing Narna-like virus 1 (LepseyNLV1) have been reported in cultures recovered from patients with visceral leishmaniasis. A deep-branching trypanosomatid viral lineage showing strong affinities to bunyaviruses was termed " &lt;i&gt;Leishbunyavirus&lt;/i&gt; " (LBV) and judged sufficiently distinct to warrant assignment within a proposed family termed " &lt;i&gt;Leishbunyaviridae&lt;/i&gt; " Numerous relatives of trypanosomatid viruses were found in insect metatranscriptomic surveys, which likely arise from trypanosomatid microbiota. Despite extensive sampling we found no relatives of the totivirus &lt;i&gt;Leishmaniavirus&lt;/i&gt; (LRV1/2), implying that it was acquired at about the same time the &lt;i&gt;Leishmania&lt;/i&gt; became able to parasitize vertebrates. As viruses were found in over a quarter of isolates tested, many more are likely to be found in the &gt;600 unsurveyed trypanosomatid species. Viral loss was occasionally observed in culture, providing potentially isogenic virus-free lines enabling studies probing the biological role of trypanosomatid viruses. These data shed important insights on the emergence of viruses within an important trypanosomatid clade relevant to human disease

Biotic interactions as drivers of algal origin and evolution

Biotic interactions underlie life's diversity and are the lynchpin to understanding its complexity and resilience within an ecological niche. Algal biologists have embraced this paradigm, and studies building on the explosive growth in omics and cell biology methods have facilitated the in-depth analysis of nonmodel organisms and communities from a variety of ecosystems. In turn, these advances have enabled a major revision of our understanding of the origin and evolution of photosynthesis in eukaryotes, bacterial–algal interactions, control of massive algal blooms in the ocean, and the maintenance and degradation of coral reefs. Here, we review some of the most exciting developments in the field of algal biotic interactions and identify challenges for scientists in the coming years. We foresee the development of an algal knowledgebase that integrates ecosystem-wide omics data and the development of molecular tools/resources to perform functional analyses of individuals in isolation and in populations. These assets will allow us to move beyond mechanistic studies of a single species towards understanding the interactions amongst algae and other organisms in both the laboratory and the field

Insect trypanosomatids in Papua New Guinea: high endemism and diversity (18S rRNA dataset)

We analyzed the collection of heteropteran hosts (907 specimens from 138 species and 23 families) captured in Papua New Guinea (PNG), a well-known biodiversity hotspot with a considerable number of endemic species of macroorganisms, for the presence of trypanosomatids, the prevalence of infection and host specificity. In addition to discovery of numerous new parasite species, some of which may represent new trypanosomatid genera, we recorded new insect hosts for the widespread trypanosomatid species and revealed potential cases of host-parasite coevolution. Attached is the alignment of sequences used in our assay of trypanosomatid diversity in PNG. In total, 185 trypanosomatid 18S rRNA sequences (147 retrieved from the GenBank and 38 representing typing units unique for PNG) were aligned using MAFFT v. 7.4. Alignment trimming was not performed in order to preserve differences between closely related species

Insect trypanosomatids in Papua New Guinea: high endemism and diversity (18S rRNA dataset)

We analyzed the collection of heteropteran hosts (907 specimens from 138 species and 23 families) captured in Papua New Guinea (PNG), a well-known biodiversity hotspot with a considerable number of endemic species of macroorganisms, for the presence of trypanosomatids, the prevalence of infection and host specificity. In addition to discovery of numerous new parasite species, some of which may represent new trypanosomatid genera, we recorded new insect hosts for the widespread trypanosomatid species and revealed potential cases of host-parasite coevolution. Attached is the alignment of sequences used in our assay of trypanosomatid diversity in PNG. In total, 185 trypanosomatid 18S rRNA sequences (147 retrieved from the GenBank and 38 representing typing units unique for PNG) were aligned using MAFFT v. 7.4. Alignment trimming was not performed in order to preserve differences between closely related species

Assemblage of benthic foraminifera in sediment core GIK23414-8

Marine isotope stage (MIS) 9 is one of the least investigated Pleistocene interglaciations. The present study describes reconstructions of deepwater conditions during this time interval based on benthic foraminiferal assemblages from sediment core M23414 (Rockall Plateau, North Atlantic). The results of faunal analysis were supported by planktic d18O, sea surface temperature reconstructions based on planktic foraminiferal assemblages and content of ice rafted debris. Statistical data processing using principal component analysis revealed five climaterelated benthic foraminiferal associations that changed in response to alterations of deepwater circulation

Verification of digital integrated circuits taking into account pad models

The digital integrated circuit is the main part of different sensors. It performs signal processing, controlling of a system and provides interface with external devices. Timing analysis is a basic verification method of digital integrated circuits. A new technique of digital blocks timing analysis taking into account the models of contact pads is proposed. The results of the I2C interface unit development using the proposed technique are presented

Recent advances in trypanosomatid research: genome organization, expression, metabolism, taxonomy and evolution.

Unicellular flagellates of the family Trypanosomatidae are obligatory parasites of invertebrates, vertebrates and plants. Dixenous species are aetiological agents of a number of diseases in humans, domestic animals and plants. Their monoxenous relatives are restricted to insects. Because of the high biological diversity, adaptability to dramatically different environmental conditions, and omnipresence, these protists have major impact on all biotic communities that still needs to be fully elucidated. In addition, as these organisms represent a highly divergent evolutionary lineage, they are strikingly different from the common 'model system' eukaryotes, such as some mammals, plants or fungi. A number of excellent reviews, published over the past decade, were dedicated to specialized topics from the areas of trypanosomatid molecular and cell biology, biochemistry, host-parasite relationships or other aspects of these fascinating organisms. However, there is a need for a more comprehensive review that summarizing recent advances in the studies of trypanosomatids in the last 30 years, a task, which we tried to accomplish with the current paper