Drawing OWL 2 ontologies with Eddy the editor

In this paper we introduce Eddy, a new open-source tool for the graphical editing of OWL~2 ontologies. Eddy is specifically designed for creating ontologies in Graphol, a completely visual ontology language that is equivalent to OWL~2. Thus, in Eddy ontologies are easily drawn as diagrams, rather than written as sets of formulas, as commonly happens in popular ontology design and engineering environments. This makes Eddy particularly suited for usage by people who are more familiar with diagramatic languages for conceptual modeling rather than with typical ontology formalisms, as is often required in non-academic and industrial contexts. Eddy provides intuitive functionalities for specifying Graphol diagrams, guarantees their syntactic correctness, and allows for exporting them in standard OWL 2 syntax. A user evaluation study we conducted shows that Eddy is perceived as an easy and intuitive tool for ontology specification

The Object Management Group Ontology Definition Metamodel

Report of a submission being made to a major international software engineering standards group, the Object Management Group which ties together OMG standards with World-Wide Web Consortium and International Standards Organization standards. Major industry bodies including IBM are collaborating, and the submission has the support of 24 companies. OMG, W3C and ISO standards strongly influence the industry, especially in combination. Colomb was a major contributor, responsible for 30% of the submission, and the primary author of the paper

Visualization and user interactions in RDF data representation

The spreading of linked data in digital technologies creates the need to develop new approaches to handle this kind of data. The modern trends in the information technology encourage usage of human-friendly interfaces and graphical tools, which helps users to understand the system and speeds up the work processes. In this study my goal is to develop a set of best practices for solving the problem of visualizations and interactions with linked data and to create a working prototype based on this practices. My work is a part of a project developed by Fail-Safe IT Solutions Oy. During the research process I study various existing products that try to solve the problem of human-friendly interactions with linked data, compare them and based on the comparison develop my own approach for solving the problem in the given environment, which satisfies the provided specifications. The key findings of the research can be grouped in two categories. The first category of findings is based on the existing solution examinations and is related to the features I find beneficial to the project. The second category is based on the experience acquired during the project development and includes environment-specific and project-related findings

An Introduction to Ontologies and Ontology Engineering

In the last decades, the use of ontologies in information systems has become more and more popular in various fields, such as web technologies, database integration, multi agent systems, natural language processing, etc. Artificial intelligent researchers have initially borrowed the word “ontology” from Philosophy, then the word spread in many scientific domain and ontologies are now used in several developments. The main goal of this chapter is to answer generic questions about ontologies, such as: Which are the different kinds of ontologies? What is the purpose of the use of ontologies in an application? Which methods can I use to build an ontology

A Framework for Ontology Reuse and Persistence Integrating UML and Sesame

Nowadays there is a great effort underway to improve the World Wide Web. A better content organisation, allowing automatic processing, leading to the Semantic Web is one of the main goals. In the light of bringing this technology closer to the Software Engineering community we propose an architecture allowing an easier development for ontology-based applications. Thus, we first present a methodology for ontology creation and automatic code generation using the widely adopted CASE UML tools. And based on a study of the art of the different RDF storage and querying systems, we couple this methodology with the Sesame system for providing a framework able to deal with large knowledge bases

Design and Development of a Mineral Exploration Ontology

In this thesis, an ontology for the mineral exploration domain is designed and developed applying the Protégé ontology editor. The MinExOnt ontology includes a formal and explicit representation of the terms describing real objects, activities, and processes in mineral exploration. The stages used for these activities have various vocabularies, which are semantically modeled in this ontology with Web Ontology Language (OWL). The aim of the thesis is to show how ontologies can be designed and developed to help manage and represent geological knowledge. In addition to providing a general workflow for building the ontology, this thesis presents a simple user guide for the used software, including Protégé, used for ontology development, and Knoodl-OntVis, used for OWL visualization

Visual exploration of semantic-web-based knowledge structures

Humans have a curious nature and seek a better understanding of the world. Data, in- formation, and knowledge became assets of our modern society through the information technology revolution in the form of the internet. However, with the growing size of accumulated data, new challenges emerge, such as searching and navigating in these large collections of data, information, and knowledge. The current developments in academic and industrial contexts target the corresponding challenges using Semantic Web techno- logies. The Semantic Web is an extension of the Web and provides machine-readable representations of knowledge for various domains. These machine-readable representations allow intelligent machine agents to understand the meaning of the data and information; and enable additional inference of new knowledge. Generally, the Semantic Web is designed for information exchange and its processing and does not focus on presenting such semantically enriched data to humans. Visualizations support exploration, navigation, and understanding of data by exploiting humans’ ability to comprehend complex data through visual representations. In the context of Semantic- Web-Based knowledge structures, various visualization methods and tools are available, and new ones are being developed every year. However, suitable visualizations are highly dependent on individual use cases and targeted user groups. In this thesis, we investigate visual exploration techniques for Semantic-Web-Based knowledge structures by addressing the following challenges: i) how to engage various user groups in modeling such semantic representations; ii) how to facilitate understanding using customizable visual representations; and iii) how to ease the creation of visualizations for various data sources and different use cases. The achieved results indicate that visual modeling techniques facilitate the engagement of various user groups in ontology modeling. Customizable visualizations enable users to adjust visualizations to the current needs and provide different views on the data. Additionally, customizable visualization pipelines enable rapid visualization generation for various use cases, data sources, and user group

Semantic linking of complex properties, monitoring processes and facilities in web-based representations of the environment

Where a virtual representation of the Earth must contain data values observed within the physical Earth system, data models are required that allow the integration of data across the silos of various Earth and environmental sciences domains. Creating a mapping between the well-defined terminologies of these silos is a stubborn problem. This paper presents a generalised ontology for use within Web 3.0 services, which builds on European Commission spatial data infrastructure models. The presented ontology acknowledges that there are many complexities to the description of environmental properties which can be observed within the physical Earth system. The ontology is shown to be flexible and robust enough to describe concepts drawn from a range of Earth science disciplines, including ecology, geochemistry, hydrology and oceanography. This paper also demonstrates the alignment and compatibility of the ontology with existing systems and shows applications in which the ontology may be deployed