Discovering Knowledge through Highly Interactive Information Based Systems

[EN] The new Internet era has increased a production of digital data. The mankind had an easy way to the knowledge access never before, but at the same time the rapidly increasing rate of new data, the ease of duplication and transmission of these data across the Net, the new available channels for information dissemination, the large amounts of historical data, questionable quality of the existing data and so on are issues for information overload that causes more difficult to make decision using the right data. Soft-computing techniques for decision support systems and business intelligent systems present pretty interesting and necessary solutions for data management and supporting decision-making processes, but the last step at the decision chain is usually supported by a human agent that has to process the system outcomes in form of reports or visualizations. These kinds of information representations are not enough to make decisions because of behind them could be hidden information patterns that are not obvious for automatic data processing and humans must interact with these data representation in order to discover knowledge. According to this, the current special issue is devoted to present nine experiences that combine visualization and visual analytics techniques, data mining methods, intelligent recommendation agents, user centered evaluation and usability patterns, etc. in interactive systems as a key issue for knowledge discovering in advanced and emerging information systems.[ES] La nueva era de Internet ha aumentado la producción de datos digitales. Nunca nates la humanidad ha tenido una manera más fácil el acceso a los conocimientos, pero al mismo tiempo el rápido aumento de la tasa de nuevos datos, la facilidad de duplicación y transmisión de estos datos a través de la red, los nuevos canales disponibles para la difusión de información, las grandes cantidades de los datos históricos, cuestionable calidad de los datos existentes y así sucesivamente, son temas de la sobrecarga de información que hace más difícil tomar decisiones con la información correcta. Técnicas de Soft-computing para los sistemas de apoyo a las decisiones y sistemas inteligentes de negocios presentan soluciones muy interesantes y necesarias para la gestión de datos y procesos de apoyo a la toma de decisiones, pero el último paso en la cadena de decisiones suele ser apoyados por un agente humano que tiene que procesar los resultados del sistema de en forma de informes o visualizaciones. Este tipo de representaciones de información no son suficientes para tomar decisiones debido detrás de ellos podrían ser patrones de información ocultos que no son obvios para el procesamiento automático de datos y los seres humanos deben interactuar con estos representación de datos con el fin de descubrir el conocimiento. De acuerdo con esto, el presente número especial está dedicado a nueve experiencias actuales que combinan técnicas de visualización y de análisis visual, métodos de minería de datos, agentes de recomendación inteligentes y evaluación centrada en el usuario y patrones de usabilidad, etc. En sistemas interactivos como un tema clave para el descubrimiento de conocimiento en los sistemas de información avanzados y emergentes

How Evolutionary Visual Software Analytics Supports Knowledge Discovery

[EN] Evolutionary visual software analytics is a specialization of visual analytics. It is aimed at supporting software maintenance processes by aiding the understanding and comprehension of software evolution with the active participation of users. Therefore, it deals with the analysis of software projects that have been under development and maintenance for several years and which are usually formed by thousands of software artifacts,which are also associated to logs from communications, defect-tracking and software configuration management systems. Accordingly, evolutionary visual software analytics aims to assist software developers and software project managers by means of an integral approach that takes into account knowledge extraction techniques as well as visual representations that make use of interaction techniques and linked views. Consequently,this paper discusses the implementation of an architecture based on the evolutionary visual software analytics process and how it supports knowledge discovery during software maintenance tasks.[ES] Analítica de software visual evolutivos es una especialización de la analítica visual. Está dirigido a apoyar los procesos de mantenimiento de software, ayudando al entendimiento y la comprensión de la evolución del software, con la participación activa de los usuarios. Por lo tanto, tiene que ver con el análisis de los proyectos de software que han estado bajo desarrollo y mantenimiento por varios años y que por lo general están formados por miles de artefactos de software, que también están asociadas a los registros de las comunicaciones, seguimiento de defectos y sistemas de gestión de configuración de software. En consecuencia, la analítica de software visual evolutivos tiene como objetivo ayudar a los desarrolladores de software y administradores de proyectos de software a través de un enfoque integral que tenga en cuenta las técnicas de extracción de conocimiento, así como representaciones visuales que hacen uso de técnicas de interacción y vistas enlazadas. En consecuencia, en este documento se analiza la implementación de una arquitectura basada en el proceso de analítica de software visual evolutivos y la forma en que apoya el descubrimiento de conocimiento durante las tareas de mantenimiento de softwar

Climate Change and Marine Geological Dynamics

The tendency for climate to change has been one of the most surprising outcomes of the study of Earth's history. Marine geoscience can reveal valuable information about past environments, climates, and biota just before, during and after each climate perturbation. Particularly, certain intervals of geological records are windows to key episodes in the climate history of the Earth–life system. Ιn this regard, the detailed analyses of such time intervals are challenging and rewarding for environmental reconstruction and climate modelling, because they provide documentation and better understanding of a warmer-than-present world, and opportunities to test and refine the predictive ability of climate models. Marine geological dynamics such as sea-level changes, hydrographic parameters, water quality, sedimentary cyclicity, and (paleo)climate are strongly related through a direct exchange between the oceanographic and atmospheric systems. The increasing attention paid to this wide topic is also motivated by the interplay of these processes across a variety of settings (coastal to open marine) and timescales (early Cenozoic to modern). In order to realize the full predictive value of these warm (fresh)/cold (salty) intervals in Earth's history, it is important to have reliable tools (e.g., integrated geochemical, paleontological and/or paleoceanographic proxies) through the application of multiple, independent, and novel techniques (e.g., TEX86, UK’37, Mg/Ca, Na/Ca, Δ47, and μCT) for providing reliable hydroclimate reconstructions at both local and global scales

Expedition 390 Preliminary Report. South Atlantic Transect 1

The South Atlantic Transect (SAT) is a multidisciplinary scientific ocean drilling project that comprises four International Ocean Discovery Program (IODP) expeditions: engineering Expeditions 390C and 395E as well as Expeditions 390 and 393. Altogether, the expeditions aim to recover complete sedimentary sections and the upper 100–350 m of the underlying oceanic crust along a slow/intermediate spreading rate Mid-Atlantic Ridge crustal flow line at ~31°S. The sediments along this transect were originally spot cored more than 50 y ago during Deep Sea Drilling Project Leg 3 (December 1968–January 1969) to help verify the theories of seafloor spreading and plate tectonics. Given dramatic advances in drilling technology and analytical capabilities since Leg 3, many high-priority scientific objectives can be addressed by revisiting the transect. The SAT expeditions target six primary sites on 7, 15, 31, 49, and 61 Ma ocean crust, which fill critical gaps in our sampling of intact in situ ocean crust with regards to crustal age, spreading rate, and sediment thickness. Drilling these sites is required to investigate the history of the low-temperature hydrothermal interactions between the aging ocean crust and the evolving South Atlantic Ocean and quantify past hydrothermal contributions to global biogeochemical cycles. Samples from the transect of the previously unexplored sediment- and basalt-hosted deep biosphere beneath the South Atlantic Gyre are essential to refining global biomass estimates and examining microbial ecosystems’ responses to variable conditions in a low-energy gyre and aging ocean crust. The transect is located near World Ocean Circulation Experiment Line A10, providing access to records of carbonate chemistry and deepwater mass properties across the western South Atlantic through key Cenozoic intervals of elevated atmospheric CO2 and rapid climate change. Reconstruction of the history of the deep western boundary current and deepwater formation in the Atlantic basins will yield crucial data to test hypotheses regarding the role of evolving thermohaline circulation patterns in climate change and the effects of tectonic gateways and climate on ocean acidification. Engineering Expeditions 390C and 395E cored a single hole through the sediment/basement interface with the advanced piston corer/extended core barrel system at five of the six primary proposed SAT sites and installed a reentry system with casing either into basement or within 10 m of basement at each of those five sites. Expedition 390 (7 April–7 June 2022) conducted operations at three of the SAT sites, recovering 700 m of core (77% recovery) over 30.3 days of on-site operations. Sediment coring, basement drilling, and logging were conducted at two sites on 61 Ma crust, and sediment coring was completed at the 7 Ma crust site. At Site U1557 on 61 Ma crust, the drill bit was deposited on the seafloor prior to downhole logging, leaving Hole U1557D available for future deepening and to establish a legacy borehole for basement hydrothermal and microbiological experiments. Expedition 390 scientists additionally described, and analyzed data from, 792 m of core collected during Expeditions 390C and 395E. Expedition 393 plans to operate at four sites, conducting basement drilling and downhole logging at the 7 Ma site, in addition to sediment coring, basement drilling, and logging at the sites intermediate in age

KOLAM : human computer interfaces fro visual analytics in big data imagery

In the present day, we are faced with a deluge of disparate and dynamic information from multiple heterogeneous sources. Among these are the big data imagery datasets that are rapidly being generated via mature acquisition methods in the geospatial, surveillance (specifically, Wide Area Motion Imagery or WAMI) and biomedical domains. The need to interactively visualize these imagery datasets by using multiple types of views (as needed) into the data is common to these domains. Furthermore, researchers in each domain have additional needs: users of WAMI datasets also need to interactively track objects of interest using algorithms of their choice, visualize the resulting object trajectories and interactively edit these results as needed. While software tools that fulfill each of these requirements individually are available and well-used at present, there is still a need for tools that can combine the desired aspects of visualization, human computer interaction (HCI), data analysis, data management, and (geo-)spatial and temporal data processing into a single flexible and extensible system. KOLAM is an open, cross-platform, interoperable, scalable and extensible framework for visualization and analysis that we have developed to fulfil the above needs. The novel contributions in this thesis are the following: 1) Spatio-temporal caching for animating both giga-pixel and Full Motion Video (FMV) imagery, 2) Human computer interfaces purposefully designed to accommodate big data visualization, 3) Human-in-the-loop interactive video object tracking - ground-truthing of moving objects in wide area imagery using algorithm assisted human-in-the-loop coupled tracking, 4) Coordinated visualization using stacked layers, side-by-side layers/video sub-windows and embedded imagery, 5) Efficient one-click manual tracking, editing and data management of trajectories, 6) Efficient labeling of image segmentation regions and passing these results to desired modules, 7) Visualization of image processing results generated by non-interactive operators using layers, 8) Extension of interactive imagery and trajectory visualization to multi-monitor wall display environments, 9) Geospatial applications: Providing rapid roam, zoom and hyper-jump spatial operations, interactive blending, colormap and histogram enhancement, spherical projection and terrain maps, 10) Biomedical applications: Visualization and target tracking of cell motility in time-lapse cell imagery, collecting ground-truth from experts on whole-slide imagery (WSI) for developing histopathology analytic algorithms and computer-aided diagnosis for cancer grading, and easy-to-use tissue annotation features.Includes bibliographical reference

Morphometrics of Southern Ocean diatoms using high throughput imaging and semi-automated image analysis

Since the ADIAC project, which ended more than 15 years ago, not much progress in automating morphometric analysis of diatoms from slide-mounted material has been published, and no ready-to-use system has become available. This thesis work is the first to implement such a system completely, covering all aspects of the underlying imaging and image processing pipeline, by combining a commercially available slide scanning microscope with my diatom morphometry software SHERPA. I was able to show the applicability as well as the potential of this approach by executing a series of smaller and two large-scale morphometry projects. The extensive sampling sizes, which were made possible only by the new workflow, enabled the first observations of life cycle related size distribution changes of Fragilariopsis kerguelensis in its natural habitat, leading to hypotheses on influences of reproduction, grazing and environmental changes in one of the most important diatom species of the Southern Ocean. In a second large-scale investigation, SHERPA's precise morphometric measurements revealed a second F. kerguelensis morphotype, which has not been recognized before, even though the species, as well as the very material I analyzed, have been investigated intensely before by experienced diatomists; a result not disqualifying their work, but rather underlining that explicit and precise quantification of morphological information has a strong potential to generate novel scientific insights. This new morphotype has implications on the utilization of paleo-proxies which are based on geometrical valve features of F. kerguelensis. Differentiating both morphotypes might improve established methods and possibly provides a new proxy for summer sea surface temperature

Reconstruction of the Holocene monsoon climate variability in the Arabian Sea based on alkenone sea surface temperature, primary productivity and denitrification proxies

The Indian monsoon climate influences large parts of the world’s population. But relatively little is known about its decadal to centennial scale variation at time scales of societal relevance. The aim of this study was to reconstruct the Holocene history of summer and winter monsoon variability in high-resolution by analyzing sediment cores from different locations in the Arabian Sea (northern Indian Ocean). Oceanic properties and biogeochemical processes in the Arabian Sea, such as sea surface temperature (SST), primary productivity and the intensity of the mid-water oxygen minimum zone and water column denitrification are closely coupled to the seasonal monsoon cycle. While primary productivity and SST in the northwestern Arabian Sea are mainly impacted by upwelling processes associated with the summer monsoon, in the northeastern Arabian Sea off Pakistan low SST and high primary productivity are driven by the north-easterly winds of the winter monsoon. Based on this modern setting, I analyzed alkenone-derived SST changes together with proxies of primary productivity (organic carbon, carbonate/opal, δ15N) in a well-laminated sediment core from the Pakistan continental margin to establish a high-resolution record of winter monsoon strength for the late Holocene (chapter 3). Over the last 2400 years reconstructed SST decreased whereas productivity increased, reflecting a long-term trend of winter monsoon strengthening. A comparison of my winter monsoon record with records of summer monsoon strength shows that an inverse relationship of summer and winter monsoon strength exists in the Asian monsoon region over the late Holocene. The linked variation of summer and winter monsoon strength most likely was caused by shifts in the long-term latitudinal position of the Intertropical Convergence Zone (ITCZ), forced by changes in solar output. Reconstruction and comparison of alkenone-derived SST patterns from two sediment cores, one from the summer monsoon dominated northwestern Arabian Sea and one from the winter monsoon influenced northeastern Arabian Sea, reveal that this antagonistic behavior of summer and winter monsoon strength was also evident over the last 25,000 years (chapter 4). Strong upwelling at the coast of northern Oman reflects intensified summer monsoon activity during the early Holocene climate optimum, contemporaneous with a decline in winter monsoon strength as indicated by increasing SST off Pakistan. Strengthening of winter monsoon activity since the early Holocene was forced by a southward displacement of the ITCZ throughout the Holocene. The late Holocene alkenone-based SST record from the northeastern Arabian Sea shows a close correlation to decadal to centennial scale climate variability recorded on the Asian continent and the high-latitude Northern Hemisphere. Colder climate conditions (as observed during the Little Ice Age) increase the strength of northeast monsoonal winds and lower SST in the northeastern Arabian Sea. Chapter 5 deals with the temporal and spatial variability of the Arabian Sea oxygen minimum zone (OMZ) over the Holocene and its relation to varying monsoon strength. Proxies of mid-water oxygenation and southwest monsoon strength were analyzed in a sediment core from the northern Oman Margin representing the late and mid Holocene. The comparison of my δ15N and Mn/Al records with other records of denitrification and oxygenation from the northern Arabian Sea shows that the location of the core OMZ has shifted from the northwest (early Holocene) to the northeast (late Holocene) throughout the Holocene. This shift was caused by a reorganization of mid-water circulation (oxygen supply) in the northern Arabian Sea due to sea level rise together with spatial differences in the response of primary productivity (oxygen demand) to varying monsoon activity