Hacia el modelado 3d de tumores cerebrales mediante endoneurosonografía y redes neuronales

Las cirugías mínimamente invasivas se han vuelto populares debido a que implican menos riesgos con respecto a las intervenciones tradicionales. En neurocirugía, las tendencias recientes sugieren el uso conjunto de la endoscopia y el ultrasonido, técnica llamada endoneurosonografía (ENS), para la virtualización 3D de las estructuras del cerebro en tiempo real. La información ENS se puede utilizar para generar modelos 3D de los tumores del cerebro durante la cirugía. En este trabajo, presentamos una metodología para el modelado 3D de tumores cerebrales con ENS y redes neuronales. Específicamente, se estudió el uso de mapas auto-organizados (SOM) y de redes neuronales tipo gas (NGN). En comparación con otras técnicas, el modelado 3D usando redes neuronales ofrece ventajas debido a que la morfología del tumor se codifica directamente sobre los pesos sinápticos de la red, no requiere ningún conocimiento a priori y la representación puede ser desarrollada en dos etapas: entrenamiento fuera de línea y adaptación en línea. Se realizan pruebas experimentales con maniquíes médicos de tumores cerebrales. Al final del documento, se presentan los resultados del modelado 3D a partir de una base de datos ENS.Minimally invasive surgeries have become popular because they reduce the typical risks of traditional interventions. In neurosurgery, recent trends suggest the combined use of endoscopy and ultrasound (endoneurosonography or ENS) for 3D virtualization of brain structures in real time. The ENS information can be used to generate 3D models of brain tumors during a surgery. This paper introduces a methodology for 3D modeling of brain tumors using ENS and unsupervised neural networks. The use of self-organizing maps (SOM) and neural gas networks (NGN) is particularly studied. Compared to other techniques, 3D modeling using neural networks offers advantages, since tumor morphology is directly encoded in synaptic weights of the network, no a priori knowledge is required, and the representation can be developed in two stages: off-line training and on-line adaptation. Experimental tests were performed using virtualized phantom brain tumors. At the end of the paper, the results of 3D modeling from an ENS database are presented

Medical imaging analysis with artificial neural networks

Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging

Hybrid Region-based Image Compression Scheme for Mamograms and Ultrasound Images

The need for transmission and archive of mammograms and ultrasound Images has dramatically increased in tele-healthcare applications. Such images require large amount of' storage space which affect transmission speed. Therefore an effective compression scheme is essential. Compression of these images. in general. laces a great challenge to compromise between the higher compression ratio and the relevant diagnostic information. Out of the many studied compression schemes. lossless . IPl. (i- LS and lossy SPII IT are found to he the most efficient ones. JPEG-LS and SI'll IT are chosen based on a comprehensive experimental study carried on a large number of mammograms and ultrasound images of different sizes and texture. The lossless schemes are evaluated based on the compression ratio and compression speed. The distortion in the image quality which is introduced by lossy methods evaluated based on objective criteria using Mean Square Error (MSE) and Peak signal to Noise Ratio (PSNR). It is found that lossless compression can achieve a modest compression ratio 2: 1 - 4: 1. bossy compression schemes can achieve higher compression ratios than lossless ones but at the price of the image quality which may impede diagnostic conclusions. In this work, a new compression approach called Ilvbrid Region-based Image Compression Scheme (IIYRICS) has been proposed for the mammograms and ultrasound images to achieve higher compression ratios without compromising the diagnostic quality. In I LYRICS, a modification for JPI; G-LS is introduced to encode the arbitrary shaped disease affected regions. Then Shape adaptive SPIT IT is applied on the remaining non region of interest. The results clearly show that this hybrid strategy can yield high compression ratios with perfect reconstruction of diagnostic relevant regions, achieving high speed transmission and less storage requirement. For the sample images considered in our experiment, the compression ratio increases approximately ten times. However, this increase depends upon the size of the region of interest chosen. It is also föund that the pre-processing (contrast stretching) of region of interest improves compression ratios on mammograms but not on ultrasound images

On color image quality assessment using natural image statistics

Color distortion can introduce a significant damage in visual quality perception, however, most of existing reduced-reference quality measures are designed for grayscale images. In this paper, we consider a basic extension of well-known image-statistics based quality assessment measures to color images. In order to evaluate the impact of color information on the measures efficiency, two color spaces are investigated: RGB and CIELAB. Results of an extensive evaluation using TID 2013 benchmark demonstrates that significant improvement can be achieved for a great number of distortion type when the CIELAB color representation is used

An Effective Ultrasound Video Communication System Using Despeckle Filtering and HEVC

The recent emergence of the high-efficiency video coding (HEVC) standard promises to deliver significant bitrate savings over current and prior video compression standards, while also supporting higher resolutions that can meet the clinical acquisition spatiotemporal settings. The effective application of HEVC to medical ultrasound necessitates a careful evaluation of strict clinical criteria that guarantee that clinical quality will not be sacrificed in the compression process. Furthermore, the potential use of despeckle filtering prior to compression provides for the possibility of significant additional bitrate savings that have not been previously considered. This paper provides a thorough comparison of the use of MPEG-2, H.263, MPEG-4, H.264/AVC, and HEVC for compressing atherosclerotic plaque ultrasound videos. For the comparisons, we use both subjective and objective criteria based on plaque structure and motion. For comparable clinical video quality, experimental evaluation on ten videos demonstrates that HEVC reduces bitrate requirements by as much as 33.2% compared to H.264/AVC and up to 71% compared to MPEG-2. The use of despeckle filtering prior to compression is also investigated as a method that can reduce bitrate requirements through the removal of higher frequency components without sacrificing clinical quality. Based on the use of three despeckle filtering methods with both H.264/AVC and HEVC, we find that prior filtering can yield additional significant bitrate savings. The best performing despeckle filter (DsFlsmv) achieves bitrate savings of 43.6% and 39.2% compared to standard nonfiltered HEVC and H.264/AVC encoding, respectively

Digital watermarking in medical images

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University, 05/12/2005.This thesis addresses authenticity and integrity of medical images using watermarking. Hospital Information Systems (HIS), Radiology Information Systems (RIS) and Picture Archiving and Communication Systems (P ACS) now form the information infrastructure for today's healthcare as these provide new ways to store, access and distribute medical data that also involve some security risk. Watermarking can be seen as an additional tool for security measures. As the medical tradition is very strict with the quality of biomedical images, the watermarking method must be reversible or if not, region of Interest (ROI) needs to be defined and left intact. Watermarking should also serve as an integrity control and should be able to authenticate the medical image. Three watermarking techniques were proposed. First, Strict Authentication Watermarking (SAW) embeds the digital signature of the image in the ROI and the image can be reverted back to its original value bit by bit if required. Second, Strict Authentication Watermarking with JPEG Compression (SAW-JPEG) uses the same principal as SAW, but is able to survive some degree of JPEG compression. Third, Authentication Watermarking with Tamper Detection and Recovery (AW-TDR) is able to localise tampering, whilst simultaneously reconstructing the original image

Deep Task-Based Analog-To-Digital Conversion

Analog-To-digital converters (ADCs) allow physical signals to be processed using digital hardware. Their conversion consists of two stages: Sampling, which maps a continuous-Time signal into discrete-Time, and quantization, i.e., representing the continuous-Amplitude quantities using a finite number of bits. ADCs typically implement generic uniform conversion mappings that are ignorant of the task for which the signal is acquired, and can be costly when operating in high rates and fine resolutions. In this work we design task-oriented ADCs which learn from data how to map an analog signal into a digital representation such that the system task can be efficiently carried out. We propose a model for sampling and quantization that facilitates the learning of non-uniform mappings from data. Based on this learnable ADC mapping, we present a mechanism for optimizing a hybrid acquisition system comprised of analog combining, tunable ADCs with fixed rates, and digital processing, by jointly learning its components end-To-end. Then, we show how one can exploit the representation of hybrid acquisition systems as deep networks to optimize the sampling and quantization rates given the task by utilizing Bayesian meta-learning techniques. We evaluate the proposed deep task-based ADC in two case studies: The first considers synthetic multi-variate symbol detection, where multiple analog signals are simultaneously acquired in order to recover a set of discrete symbols. The second application is beamforming of analog channel data acquired in ultrasound imaging. Our numerical results demonstrate that the proposed approach achieves performance which is comparable to operating with high sampling rates and fine resolution quantization, while operating with reduced overall bit rate. For instance, we demonstrate that deep task-based ADCs enable accurate reconstruction of ultrasound images while using 12.5% of the overall number of bits used by conventional ADCs.</p

Extraction of anthropological data with ultrasound

This thesis was submitted for the degree of Doctor of Philosophy and was awarded by Brunel University.Human body scanners used to extract anthropological data have a significant drawback, the subject is required to undress or wear tight fitting clothing. This thesis demonstrates an ultrasonic based alternative to the current optical systems, that can potentially operate on a fully clothed subject. To validate the concept several experiments were performed to determine the acoustic properties of multiple garments. The results indicated that such an approach was possible. Beamforming is introduced as a method by which the ultrasonic scanning area can be increased, the concept is thoroughly studied and a clear theoretical analysis is performed. Additionally, Matlab has been used to demonstrate graphically, the results of such analysis, providing an invaluable tool during the simulation, experimental and results stages of the thesis. To evaluate beamfoming as a composite part of ultrasonic body imaging, a hardware solution was necessary. During the concept phase, both FPGA and digital signal processors were evaluated to determine their suitability for the role. An FPGA approach was finally chosen, which allows highly parallel operation, essential to the high acquisition speeds required by some beamforming methodologies. In addition, analogue circuitry was also designed to provide an interface with the ultrasonic transducers, which, included variable gain amplifiers, charge amplifiers and signal conditioning. Finally, a digital acquisition card was used to transfer data between the FPGA and a desktop computer, on which, the sampled data was processed and displayed in a coherent graphical manner. The beamforming results clearly demonstrate that imaging multiple layers in air, with ultrasound, is a viable technique for anthroplogical data collection. Furthermore, a wavelet based method of improving the axial resolution is also proposed and demonstrated

Significant medical image compression techniques: a review

Telemedicine applications allow the patient and doctor to communicate with each other through network services. Several medical image compression techniques have been suggested by researchers in the past years. This review paper offers a comparison of the algorithms and the performance by analysing three factors that influence the choice of compression algorithm, which are image quality, compression ratio, and compression speed. The results of previous research have shown that there is a need for effective algorithms for medical imaging without data loss, which is why the lossless compression process is used to compress medical records. Lossless compression, however, has minimal compression ratio efficiency. The way to get the optimum compression ratio is by segmentation of the image into region of interest (ROI) and non-ROI zones, where the power and time needed can be minimised due to the smaller scale. Recently, several researchers have been attempting to create hybrid compression algorithms by integrating different compression techniques to increase the efficiency of compression algorithms

Qualitative Evaluation of Data Compression in Real-time Ultrasound Imaging

The purpose of this project was to evaluate qualitatively real-time ultrasound imaging using objective and subjective techniques to determine the minimum bandwidth required for clinical diagnosis of various anatomical and pathological states. In the experimental setup live ultrasound video samples representing the most common clinical examinations were compressed at 128, 256, 384, 768, 1152 and 1536 kbps using a compressor-decompressor (CODEC) adhering to International Telecommunication Union (ITU-T) recommendation H.261. A protocol for qualitative evaluation was developed and subjective and objective testing were performed based on this protocol. Subjective methods comprised of inter-rater reliability tests using kappa statistics and three way Analysis of Variance (ANOVA) using General Linear Models (GLM). Objective testing were performed using histogram analysis and estimation of peak signal to noise ratios. The kappa scores for all bandwidths greater than 256 kbps indicated good inter-rater reliablity and minimum variation in confidence levels. Using the results from GLM and ANOVA we could not establish a trend in degradation of observer confidence with increasing compression ratios. The histogram analysis showed a linear increase in standard deviation values, indicating a linear scatter in pixel intensity, with increasing compression ratios. Although higher compression levels were evaluated, only video clips with bandwidths greater than 256 kbps displayed satisfactory temporal and spatial resolution, good enough to make clinical diagnosis of various anatomical and pathological states. The evaluations also indicate that compressed real-time ultrasound imagery using H.261 can be transmitted over a T1 or ADSL networks