Exploring the relationship between spectral reflectance and tree species diversity in the savannah woodlands.

Doctor of Philosophy in Environmental Sciences. University of KwaZulu-Natal, Pietermaritzburg, 2018.Abstract available in PDF file

UNMANNED AERIAL SYSTEMS (UAS) AS A TOOL FOR INVESTIGATING EDGE INFLUENCES IN NEW HAMPSHIRE FORESTS

The continued decline in forest cover across New England becomes more concerning when faced with the fact that these same forests may be playing an important role in the fight against climate change. New Hampshire, in particular, is experiencing a 0.27% annual net loss in forest cover as of 2018. Increased population growth and accompanied development has resulted in the removal of forest cover and the fragmentation of once continuous forest blocks. Fragmentation can lead to further degradation of the remaining forest stands via alterations of the biotic and abiotic process at their edges. The use of unmanned aerial systems (UAS) is becoming an important tool to ensure the sustainable management of current forests stands and may help to better understand the effects of fragmentation at forest edges. Because of the relatively recent arrival of this technology, effective and appropriate testing for accurate and efficient data collection is necessary. Furthermore, UAS have not been employed yet to detect edge effects.This research investigated the impacts of UAS flight parameters on the accuracy of canopy height estimates made from UAS data by comparing UAS estimates across twelve combinations of flying height and image overlap to ground measured canopy height. A multi-temporal approach to species level mapping with UAS imagery was tested by collecting multiple dates of UAS imagery from early spring to late summer and assessing whether the inclusion of one or more dates improved classification accuracy. Additional comparisons between RGB and multi-spectral cameras were carried out. Finally, UAS imagery was used to measure and assess the changes in canopy cover with increased distance from the edge. This trend was compared to trends in canopy cover measured on the ground. The results show that flying height had no impact of the accuracy of the height estimates made from UAS data and increasing forward image overlap resulted in a significant but minor increase in accuracy. Classification accuracy was improved with the use of multi-temporal data collection but no more than three dates of optimally timed imagery was necessary. Additionally, the RGB imagery produced maps with consistently higher accuracy than the multi-spectral sensor employed in this study. Finally, we were able to detect and measure a significant trend in canopy cover that mimicked the trends found on the ground. The results of the first two parts of this dissertation will go on to provide guidance to forestry practitioners on how to collect UAS that balances accuracy and efficiency, thus reducing project costs. The final result serves as an initial demonstration of utilizing UAS for understanding edge effects and opens the door to better understanding the impacts of fragmentation over larger areas

UNMANNED AERIAL SYSTEMS (UAS) AS A TOOL FOR INVESTIGATING EDGE INFLUENCES IN NEW HAMPSHIRE FORESTS

The continued decline in forest cover across New England becomes more concerning when faced with the fact that these same forests may be playing an important role in the fight against climate change. New Hampshire, in particular, is experiencing a 0.27% annual net loss in forest cover as of 2018. Increased population growth and accompanied development has resulted in the removal of forest cover and the fragmentation of once continuous forest blocks. Fragmentation can lead to further degradation of the remaining forest stands via alterations of the biotic and abiotic process at their edges. The use of unmanned aerial systems (UAS) is becoming an important tool to ensure the sustainable management of current forests stands and may help to better understand the effects of fragmentation at forest edges. Because of the relatively recent arrival of this technology, effective and appropriate testing for accurate and efficient data collection is necessary. Furthermore, UAS have not been employed yet to detect edge effects.This research investigated the impacts of UAS flight parameters on the accuracy of canopy height estimates made from UAS data by comparing UAS estimates across twelve combinations of flying height and image overlap to ground measured canopy height. A multi-temporal approach to species level mapping with UAS imagery was tested by collecting multiple dates of UAS imagery from early spring to late summer and assessing whether the inclusion of one or more dates improved classification accuracy. Additional comparisons between RGB and multi-spectral cameras were carried out. Finally, UAS imagery was used to measure and assess the changes in canopy cover with increased distance from the edge. This trend was compared to trends in canopy cover measured on the ground. The results show that flying height had no impact of the accuracy of the height estimates made from UAS data and increasing forward image overlap resulted in a significant but minor increase in accuracy. Classification accuracy was improved with the use of multi-temporal data collection but no more than three dates of optimally timed imagery was necessary. Additionally, the RGB imagery produced maps with consistently higher accuracy than the multi-spectral sensor employed in this study. Finally, we were able to detect and measure a significant trend in canopy cover that mimicked the trends found on the ground. The results of the first two parts of this dissertation will go on to provide guidance to forestry practitioners on how to collect UAS that balances accuracy and efficiency, thus reducing project costs. The final result serves as an initial demonstration of utilizing UAS for understanding edge effects and opens the door to better understanding the impacts of fragmentation over larger areas

Local forest structure variability increases resilience to wildfire in dry western U.S. coniferous forests.

A 'resilient' forest endures disturbance and is likely to persist. Resilience to wildfire may arise from feedback between fire behaviour and forest structure in dry forest systems. Frequent fire creates fine-scale variability in forest structure, which may then interrupt fuel continuity and prevent future fires from killing overstorey trees. Testing the generality and scale of this phenomenon is challenging for vast, long-lived forest ecosystems. We quantify forest structural variability and fire severity across >30 years and >1000 wildfires in California's Sierra Nevada. We find that greater variability in forest structure increases resilience by reducing rates of fire-induced tree mortality and that the scale of this effect is local, manifesting at the smallest spatial extent of forest structure tested (90 × 90 m). Resilience of these forests is likely compromised by structural homogenisation from a century of fire suppression, but could be restored with management that increases forest structural variability

Remote sensing object-oriented approaches coupled with ecological informatics to map invasive plant species

nvasive alien plants are considered one of the major threats to biodiversity conservation worldwide. Hence, understanding their distribution and abundance is important in order to assess the impact on native ecosystems. It is particularly important to be able to track the spread of invasive species across landscapes; a task best achieved using remotely sensed imagery. The availability of high resolution data, combined with efficient classification methods, can potentially improve early detection of invasive alien species thereby enhancing their management. This study aims to classify woody species with a focus on Melia azedarach (Meliaceae) trees in a moderately invaded coastal belt valley on the east coast of South Africa using WorldView-2 (WV-2) satellite imagery, and to compare the commonly used pixel-based classification with object-oriented approaches. The results show that object-oriented approaches are more suitable for classifying woody species, as well as other land cover classes when using high-resolution WV-2 imagery. The overall accuracy was 90% by object- oriented classification, while the pixel-based classification gave an overall accuracy of 78%. For Melia, a producer accuracy of 92% and user accuracy of 91% was obtained by object-oriented classification and a producer accuracy of 85% and user accuracy of 83% was obtained by pixel-based classification. Hence the combined use of new generation sensor imagery and the employment of object-oriented image classification techniques provided more accurate information on Melia invasion in the study area. This is an encouraging result given the high degree of intermingling of Melia with other plants at the study site. In particular, the vegetation maps produced from this study would aid in gathering accurate knowledge about the distribution and spreading status of Melia, a major invasivespecies over large areas of South Africa and elsewhere in the world

Understanding regional water resource dynamics due to land-cover/land-use and climate changes in the North Carolina Piedmont

The spatiotemporal distribution of freshwater resources on Earth is controlled by interacting climatologic, ecological, and physical processes. These dynamics are likely to change in the future due to climate and land cover changes with important implications for life on Earth. Ecosystem simulation models which couple these processes are increasingly relied upon to provide projections of probable future changes so that resources may be sustainably managed and future growth and development planned. The majority of these models depend critically on surface descriptions such as land cover and vegetation abundance obtained from remotely sensed images, and remote sensing methods have played an essential role in accurately parameterizing and implementing models at appreciable spatial scales. However, significant challenges exist for investigations adopting an integrated remote sensing and ecosystem simulation approach. This investigation sought to quantify the likely impacts of climate change and land cover change on the water cycle of the Eno River basin in central North Carolina. Special attention was paid to addressing and overcoming existing remote sensing methodological limitations related to mapping leaf area index (LAI) and land cover. Improved methods were developed and the resulting products used to parameterize two different ecohydrologic models which were then used to quantify the hydrological effects of various climate and land cover change scenarios. The improved methods are demonstrated to overcome several of the major existing limitations to mapping LAI and land cover accurately, consistently, and efficiently with diverse data sources. These improvements lead to greater confidence in simulated results and future projections. The results of this investigation highlight the dominant role that climate plays in structuring basin response, and indicate that future changes may increase water stress in the area, particularly under scenarios of reduced growing season precipitation.Doctor of Philosoph

Deconstructing landscape pattern : applications of remote sensing to physiognomic landscape mapping

Funding Information: This research was supported by European Social Fund?s Dora Plus Programme (Grant No. 4-12/89). Authors are grateful to Ms Joanna Storie (Estonian University of Life Sciences) for English editing and proofreading, applied to the text. Publisher Copyright: © 2019, Springer Nature B.V.In 1939, Carl Troll pointed out that “air photo interpretation is to a large extent landscape ecology”. From that time forward, remote sensing has been applied across different disciplines to comprehend the holistic and dynamic spatial layout of the visual Earth environment. However, its applicability in the domain of landscape character assessment, landscape design and planning is still questionable. The purpose of this paper was to synthesise some historical and current applications of remote sensing for the decomposition of the continual visual landscape from a bird’s eye perspective and to explore the potential for bridging geographic processes with visual perception and an appreciation of the landscape pattern. From the point of view of landscape ecology, the organisation of the landscape pattern [namely, the size, shape (form), number, density and diversity, the complexity of landscape elements, and colours and textures of the land cover] is crucial for the cognition of both the visual landscape experience and the geographic processes. There are numerous pieces of evidence from the literature that remote sensing data are widely implemented in the modelling of physiognomic landscape. The synthesis of the literature concludes with perspective directions of remote sensing applications, such as mapping the status of the ecosystem (landscape) services provision, the delineation of the boundaries of the protected areas based on the quality of the visual environment, and the assessment of the sustainability of the land use practices, regarding their impact on landscape aesthetics extent.Peer reviewe

Investigating the potential for detecting Oak Decline using Unmanned Aerial Vehicle (UAV) Remote Sensing

This PhD project develops methods for the assessment of forest condition utilising modern remote sensing technologies, in particular optical imagery from unmanned aerial systems and with Structure from Motion photogrammetry. The research focuses on health threats to the UK’s native oak trees, specifically, Chronic Oak Decline (COD) and Acute Oak Decline (AOD). The data requirements and methods to identify these complex diseases are investigatedusing RGB and multispectral imagery with very high spatial resolution, as well as crown textural information. These image data are produced photogrammetrically from multitemporal unmanned aerial vehicle (UAV) flights, collected during different seasons to assess the influence of phenology on the ability to detect oak decline. Particular attention is given to the identification of declined oak health within the context of semi-natural forests and heterogenous stands. Semi-natural forest environments pose challenges regarding naturally occurring variability. The studies investigate the potential and practical implications of UAV remote sensing approaches for detection of oak decline under these conditions. COD is studied at Speculation Cannop, a section in the Forest of Dean, dominated by 200-year-old oaks, where decline symptoms have been present for the last decade. Monks Wood, a semi-natural woodland in Cambridgeshire, is the study site for AOD, where trees exhibit active decline symptoms. Field surveys at these sites are designed and carried out to produce highly-accurate differential GNSS positional information of symptomatic and control oak trees. This allows the UAV data to be related to COD or AOD symptoms and the validation of model predictions. Random Forest modelling is used to determine the explanatory value of remote sensing-derived metrics to distinguish trees affected by COD or AOD from control trees. Spectral and textural variables are extracted from the remote sensing data using an object-based approach, adopting circular plots around crown centres at individual tree level. Furthermore, acquired UAV imagery is applied to generate a species distribution map, improving on the number of detectable species and spatial resolution from a previous classification using multispectral data from a piloted aircraft. In the production of the map, parameters relevant for classification accuracy, and identification of oak in particular, are assessed. The effect of plot size, sample size and data combinations are studied. With optimised parameters for species classification, the updated species map is subsequently employed to perform a wall-to-wall prediction of individual oak tree condition, evaluating the potential of a full inventory detection of declined health. UAV-acquired data showed potential for discrimination of control trees and declined trees, in the case of COD and AOD. The greatest potential for detecting declined oak condition was demonstrated with narrowband multispectral imagery. Broadband RGB imagery was determined to be unsuitable for a robust distinction between declined and control trees. The greatest explanatory power was found in remotely-sensed spectra related to photosynthetic activity, indicated by the high feature importance of nearinfrared spectra and the vegetation indices NDRE and NDVI. High feature importance was also produced by texture metrics, that describe structural variations within the crown. The findings indicate that the remotely sensed explanatory variables hold significant information regarding changes in leaf chemistry and crown morphology that relate to chlorosis, defoliation and dieback occurring in the course of the decline. In the case of COD, a distinction of symptomatic from control trees was achieved with 75 % accuracy. Models developed for AOD detection yielded AUC scores up to 0.98,when validated on independent sample data. Classification of oak presence was achieved with a User’s accuracy of 97 % and the produced species map generated 95 % overall accuracy across the eight species within the study area in the north-east of Monks Wood. Despite these encouraging results, it was shown that the generalisation of models is unfeasible at this stage and many challenges remain. A wall-to-wall prediction of decline status confirmed the inability to generalise, yielding unrealistic results, with a high number of declined trees predicted. Identified weaknesses of the developed models indicate complexity related to the natural variability of heterogenous forests combined with the diverse symptoms of oak decline. Specific to the presented studies, additional limitations were attributed to limited ground truth, consequent overfitting,the binary classification of oak health status and uncertainty in UAV-acquired reflectance values. Suggestions for future work are given and involve the extension of field sampling with a non-binary dependent variable to reflect the severity of oak decline induced stress. Further technical research on the quality and reliability of UAV remote sensing data is also required

Predicting evapotranspiration from sparse and dense vegetation communities in a semiarid environment using Ndvi from satellite and ground measurements

One of the most critical issues associated with using satellite data-based products to study and estimate surface energy fluxes and other ecosystem processes, has been the lack of frequent acquisition at a spatial scale equivalent to or finer than the footprint of field measurements. In this study, we incorporated continuous field measurements based on using Normalized difference vegetation index (NDVI) time series analysis of individual shrub species and transect measurements within 625 m2 size plots equivalent to the Landsat-5 Thematic Mapper spatial resolution. The NDVI system was a dual channel SKR-1800 radiometer that simultaneously measured incident solar radiation and upward reflectance in two broadband red and near-infrared channels comparable to Landsat-5 TM band 3 and band 4, respectively. The two study sites identified as Spring Valley 1 site (SV1) and Snake Valley 1 site (SNK1) were chosen for having different species composition, soil texture and percent canopy cover; NDVI time-series of greasewood (Sarcobatus vermiculatus) from the SV1 site allowed for clear distinction between the main phenological stages of the entire growing season during the period from January to November, 2007. Comparison of greasewood NDVI values between the two sites revealed a significant temporal difference associated with early canopy development and early dry down of greasewood at the SNK1 site. NDVI time series values were also significantly different between sagebrush (Artemisia tridentata ) and rabbitbrush (Chrysothamnus viscidiflorus) at SV1 as well as between the two bare soil types at the two sites, indicating the ability of the ground-based NDVI to distinguish between different plant species as well as between different desert soils based on their moisture level and color. The difference in phenological characteristics of greasewood between the two sites and between sagebrush, rabbitbrush and greasewood within the same site were not captured by the spatially integrated Landsat NDVI acquired during repeated overpasses. Greasewood NDVI from the SNK1 site produced significant correlations with many of the measured plant parameters, most closely with chlorophyll index (r = 0.97), leaf area index (r = 0.98) and leaf xylem water potential (r = 0.93). Whereas greasewood NDVI from the SV1 site produced lower correlations ( r = 0.89, r = 0.73), or non significant correlations (r = 0.32) with the same parameters, respectively. Total percent cover was estimated at 17.5% for SV1 and at 63% for SNK1; Transect measurements provided detailed information with regard to the spectral properties of shrub species and soil types, differentiating the two sites, which was not possible to discern with the spatial resolution of Landsat. Correlation between transect NDVI data and Landsat NDVI produced an r of 0.79. While correlation between transect NDVI data and ground-based NDVI sensors produced an r of 0.73. The linear regression equation between daily ET measured by the eddy covariance method and Landsat NDVI yielded a strong relationship (r = 0.88) for data combined across the experimental period (May to September) and across the two sites. The ET prediction equation was improved (r2 = 0.86) by introducing net solar radiation (Rn) which was the meteorological variable that had the highest prediction of ET (r2 = 0.82). A high correlation was found between weighted ground-based sensor NDVI estimates and Landsat derived NDVI at the pixel scale (r = 0.97) for the two study sites combined over time. While results from this study in scaling ground-based NDVI measurements and estimating ET were very promising, further verification and improvement is needed to determine the performance level of this approach over larger heterogeneous areas and over extended time periods