Input Prioritization for Testing Neural Networks

Deep neural networks (DNNs) are increasingly being adopted for sensing and control functions in a variety of safety and mission-critical systems such as self-driving cars, autonomous air vehicles, medical diagnostics, and industrial robotics. Failures of such systems can lead to loss of life or property, which necessitates stringent verification and validation for providing high assurance. Though formal verification approaches are being investigated, testing remains the primary technique for assessing the dependability of such systems. Due to the nature of the tasks handled by DNNs, the cost of obtaining test oracle data---the expected output, a.k.a. label, for a given input---is high, which significantly impacts the amount and quality of testing that can be performed. Thus, prioritizing input data for testing DNNs in meaningful ways to reduce the cost of labeling can go a long way in increasing testing efficacy. This paper proposes using gauges of the DNN's sentiment derived from the computation performed by the model, as a means to identify inputs that are likely to reveal weaknesses. We empirically assessed the efficacy of three such sentiment measures for prioritization---confidence, uncertainty, and surprise---and compare their effectiveness in terms of their fault-revealing capability and retraining effectiveness. The results indicate that sentiment measures can effectively flag inputs that expose unacceptable DNN behavior. For MNIST models, the average percentage of inputs correctly flagged ranged from 88% to 94.8%

On Improving (Non)Functional Testing

Software testing is commonly classified into two categories, nonfunctional testing and functional testing. The goal of nonfunctional testing is to test nonfunctional requirements, such as performance and reliability. Performance testing is one of the most important types of nonfunctional testing, one goal of which is to detect the phenomena that an Application Under Testing (AUT) exhibits unexpectedly worse performance (e.g., lower throughput) with some input data. During performance testing, a critical challenge is to understand the AUT’s behaviors with large numbers of combinations of input data and find the particular subset of inputs leading to performance bottlenecks. However, enumerating those particular inputs and identifying those bottlenecks are always laborious and intellectually intensive. In addition, for an evolving software system, some code changes may accidentally degrade performance between two software versions, it is even more challenging to find problematic changes (out of a large number of committed changes) may lead to performance regressions under certain test inputs. This dissertation presents a set of approaches to automatically find specific combinations of input data for exposing performance bottlenecks and further analyze execution traces to identify performance bottlenecks. In addition, this dissertation also provides an approach that automatically estimates the impact of code changes on performance degradation between two released software versions to identify the problematic ones likely leading to performance regressions. Functional testing is used to test the functional correctness of AUTs. Developers commonly write test suites for AUTs to test different functionalities and locate functional faults. During functional testing, developers rely on some strategies to order test cases to achieve certain objectives, such as exposing faults faster, which is known as Test Case Prioritization (TCP). TCP techniques are commonly classified into two categories, dynamic and static techniques. A set of empirical studies has been conducted to examine and understand different TCP techniques, but there is a clear gap in existing studies. No study has compared static techniques against dynamic techniques and comprehensively examined the impact of test granularity, program size, fault characteristics, and the similarities in terms of fault detection on TCP techniques. Thus, this dissertation presents an empirical study to thoroughly compare static and dynamic TCP techniques in terms of effectiveness, efficiency, and similarity of uncovered faults at different granularities on a large set of real-world programs, and further analyze the potential impact of program size and fault characteristics on TCP evaluation. Moreover, in the prior work, TCP techniques have been typically evaluated against synthetic software defects, called mutants. For this reason, it is currently unclear whether TCP performance on mutants would be representative of the performance achieved on real faults. to answer this fundamental question, this dissertation presents the first empirical study that investigates TCP performance when applied to both real-world faults and mutation faults for understanding the representativeness of mutants

Ant colony optimization for object-oriented unit test generation

Generating useful unit tests for object-oriented programs is difficult for traditional optimization methods. One not only needs to identify values to be used as inputs, but also synthesize a program which creates the required state in the program under test. Many existing Automated Test Generation (ATG) approaches combine search with performance-enhancing heuristics. We present Tiered Ant Colony Optimization (Taco) for generating unit tests for object-oriented programs. The algorithm is formed of three Tiers of ACO, each of which tackles a distinct task: goal prioritization, test program synthesis, and data generation for the synthesised program. Test program synthesis allows the creation of complex objects, and exploration of program state, which is the breakthrough that has allowed the successful application of ACO to object-oriented test generation. Taco brings the mature search ecosystem of ACO to bear on ATG for complex object-oriented programs, providing a viable alternative to current approaches. To demonstrate the effectiveness of Taco, we have developed a proof-of-concept tool which successfully generated tests for an average of 54% of the methods in 170 Java classes, a result competitive with industry standard Randoop

Accelerating Verified-Compiler Development with a Verified Rewriting Engine

Compilers are a prime target for formal verification, since compiler bugs invalidate higher-level correctness guarantees, but compiler changes may become more labor-intensive to implement, if they must come with proof patches. One appealing approach is to present compilers as sets of algebraic rewrite rules, which a generic engine can apply efficiently. Now each rewrite rule can be proved separately, with no need to revisit past proofs for other parts of the compiler. We present the first realization of this idea, in the form of a framework for the Coq proof assistant. Our new Coq command takes normal proved theorems and combines them automatically into fast compilers with proofs. We applied our framework to improve the Fiat Cryptography toolchain for generating cryptographic arithmetic, producing an extracted command-line compiler that is about 1000$\times$ faster while actually featuring simpler compiler-specific proofs.Comment: 13th International Conference on Interactive Theorem Proving (ITP 2022

The next generation of training for arabidopsis researchers: Bioinformatics and Quantitative Biology

It has been more than 50 years since Arabidopsis (Arabidopsis thaliana) was first introduced as a model organism to understand basic processes in plant biology. A well-organized scientific community has used this small reference plant species to make numerous fundamental plant biology discoveries (Provart et al., 2016). Due to an extremely well-annotated genome and advances in high-throughput sequencing, our understanding of this organism and other plant species has become even more intricate and complex. Computational resources, including CyVerse,3 Araport,4 The Arabidopsis Information Resource (TAIR),5 and BAR,6 have further facilitated novel findings with just the click of a mouse. As we move toward understanding biological systems, Arabidopsis researchers will need to use more quantitative and computational approaches to extract novel biological findings from these data. Here, we discuss guidelines, skill sets, and core competencies that should be considered when developing curricula or training undergraduate or graduate students, postdoctoral researchers, and faculty. A selected case study provides more specificity as to the concrete issues plant biologists face and how best to address such challenges

Performance Contracts for Software Network Functions

Software network functions (NFs), or middleboxes, promise flexibility and easy deployment of network services but face the serious challenge of unexpected performance behaviour. We propose the notion of a performance contract, a construct formulated in terms of performance critical variables, that provides a precise description of NF performance. Performance contracts enable fine-grained prediction and scrutiny of NF performance for arbitrary workloads, without having to run the NF itself. We describe BOLT, a technique and tool for computing such performance contracts for the entire software stack of NFs written in C, including the core NF logic, DPDK packet processing framework, and NIC driver. BOLT takes as input the NF implementation code and outputs the corresponding contract. Under the covers, it combines pre-analysis of a library of stateful NF data structures with automated symbolic execution of the NF’s code. We evaluate BOLT on four NFs—a Maglev-like load balancer, a NAT, an LPM router, and a MAC bridge—and show that its performance contracts predict the dynamic instruction count and memory access count with a maximum gap of 7% between the real execution and the conservatively predicted upper bound. With further engineering, this gap can be reduced

Actionable Program Analyses for Improving Software Performance

Nowadays, we have greater expectations of software than ever before. This is followed by constant pressure to run the same program on smaller and cheaper machines. To meet this demand, the application’s performance has become the essential concern in software development. Unfortunately, many applications still suffer from performance issues: coding or design errors that lead to performance degradation. However, finding performance issues is a challenging task: there is limited knowledge on how performance issues are discovered and fixed in practice, and current performance profilers report only where resources are spent, but not where resources are wasted. The goal of this dissertation is to investigate actionable performance analyses that help developers optimize their software by applying relatively simple code changes. To understand causes and fixes of performance issues in real-world software, we first present an empirical study of 98 issues in popular JavaScript projects. The study illustrates the prevalence of simple and recurring optimization patterns that lead to significant performance improvements. Then, to help developers optimize their code, we propose two actionable performance analyses that suggest optimizations based on reordering opportunities and method inlining. In this work, we focus on optimizations with four key properties. First, the optimizations are effective, that is, the changes suggested by the analysis lead to statistically significant performance improvements. Second, the optimizations are exploitable, that is, they are easy to understand and apply. Third, the optimizations are recurring, that is, they are applicable across multiple projects. Fourth, the optimizations are out-of-reach for compilers, that is, compilers can not guarantee that a code transformation preserves the original semantics. To reliably detect optimization opportunities and measure their performance benefits, the code must be executed with sufficient test inputs. The last contribution complements state-of-the-art test generation techniques by proposing a novel automated approach for generating effective tests for higher-order functions. We implement our techniques in practical tools and evaluate their effectiveness on a set of popular software systems. The empirical evaluation demonstrates the potential of actionable analyses in improving software performance through relatively simple optimization opportunities

Center-commissioned external review of International Water Management Institute: Consolidated report, 19-29 May 2003

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