Data-driven Soft Sensors in the Process Industry

In the last two decades Soft Sensors established themselves as a valuable alternative to the traditional means for the acquisition of critical process variables, process monitoring and other tasks which are related to process control. This paper discusses characteristics of the process industry data which are critical for the development of data-driven Soft Sensors. These characteristics are common to a large number of process industry fields, like the chemical industry, bioprocess industry, steel industry, etc. The focus of this work is put on the data-driven Soft Sensors because of their growing popularity, already demonstrated usefulness and huge, though yet not completely realised, potential. A comprehensive selection of case studies covering the three most important Soft Sensor application fields, a general introduction to the most popular Soft Sensor modelling techniques as well as a discussion of some open issues in the Soft Sensor development and maintenance and their possible solutions are the main contributions of this work

On the role of pre and post-processing in environmental data mining

The quality of discovered knowledge is highly depending on data quality. Unfortunately real data use to contain noise, uncertainty, errors, redundancies or even irrelevant information. The more complex is the reality to be analyzed, the higher the risk of getting low quality data. Knowledge Discovery from Databases (KDD) offers a global framework to prepare data in the right form to perform correct analyses. On the other hand, the quality of decisions taken upon KDD results, depend not only on the quality of the results themselves, but on the capacity of the system to communicate those results in an understandable form. Environmental systems are particularly complex and environmental users particularly require clarity in their results. In this paper some details about how this can be achieved are provided. The role of the pre and post processing in the whole process of Knowledge Discovery in environmental systems is discussed

R Package wgaim: QTL Analysis in Bi-Parental Populations Using Linear Mixed Models

The wgaim (whole genome average interval mapping) package developed in the R system for statistical computing (R Development Core Team 2011) builds on linear mixed modelling techniques by incorporating a whole genome approach to detecting significant quantitative trait loci (QTL) in bi-parental populations. Much of the sophistication is inherited through the well established linear mixed modelling package ASReml-R (Butler et al. 2009). As wgaim uses an extension of interval mapping to incorporate the whole genome into the analysis, functions are provided which allow conversion of genetic data objects created with the qtl package of Broman and Wu (2010) available in R. Results of QTL analyses are available using summary and print methods as well as diagnostic summaries of the selection method. In addition, the package features a flexible linkage map plotting function that can be easily manipulated to provide an aesthetic viewable genetic map. As a visual summary, QTL obtained from one or more models can also be added to the linkage map.

A systematic review of data quality issues in knowledge discovery tasks

Hay un gran crecimiento en el volumen de datos porque las organizaciones capturan permanentemente la cantidad colectiva de datos para lograr un mejor proceso de toma de decisiones. El desafío mas fundamental es la exploración de los grandes volúmenes de datos y la extracción de conocimiento útil para futuras acciones por medio de tareas para el descubrimiento del conocimiento; sin embargo, muchos datos presentan mala calidad. Presentamos una revisión sistemática de los asuntos de calidad de datos en las áreas del descubrimiento de conocimiento y un estudio de caso aplicado a la enfermedad agrícola conocida como la roya del café.Large volume of data is growing because the organizations are continuously capturing the collective amount of data for better decision-making process. The most fundamental challenge is to explore the large volumes of data and extract useful knowledge for future actions through knowledge discovery tasks, nevertheless many data has poor quality. We presented a systematic review of the data quality issues in knowledge discovery tasks and a case study applied to agricultural disease named coffee rust

One-Class Classification: Taxonomy of Study and Review of Techniques

One-class classification (OCC) algorithms aim to build classification models when the negative class is either absent, poorly sampled or not well defined. This unique situation constrains the learning of efficient classifiers by defining class boundary just with the knowledge of positive class. The OCC problem has been considered and applied under many research themes, such as outlier/novelty detection and concept learning. In this paper we present a unified view of the general problem of OCC by presenting a taxonomy of study for OCC problems, which is based on the availability of training data, algorithms used and the application domains applied. We further delve into each of the categories of the proposed taxonomy and present a comprehensive literature review of the OCC algorithms, techniques and methodologies with a focus on their significance, limitations and applications. We conclude our paper by discussing some open research problems in the field of OCC and present our vision for future research.Comment: 24 pages + 11 pages of references, 8 figure

Partial mixture model for tight clustering of gene expression time-course

Background: Tight clustering arose recently from a desire to obtain tighter and potentially more informative clusters in gene expression studies. Scattered genes with relatively loose correlations should be excluded from the clusters. However, in the literature there is little work dedicated to this area of research. On the other hand, there has been extensive use of maximum likelihood techniques for model parameter estimation. By contrast, the minimum distance estimator has been largely ignored. Results: In this paper we show the inherent robustness of the minimum distance estimator that makes it a powerful tool for parameter estimation in model-based time-course clustering. To apply minimum distance estimation, a partial mixture model that can naturally incorporate replicate information and allow scattered genes is formulated. We provide experimental results of simulated data fitting, where the minimum distance estimator demonstrates superior performance to the maximum likelihood estimator. Both biological and statistical validations are conducted on a simulated dataset and two real gene expression datasets. Our proposed partial regression clustering algorithm scores top in Gene Ontology driven evaluation, in comparison with four other popular clustering algorithms. Conclusion: For the first time partial mixture model is successfully extended to time-course data analysis. The robustness of our partial regression clustering algorithm proves the suitability of the ombination of both partial mixture model and minimum distance estimator in this field. We show that tight clustering not only is capable to generate more profound understanding of the dataset under study well in accordance to established biological knowledge, but also presents interesting new hypotheses during interpretation of clustering results. In particular, we provide biological evidences that scattered genes can be relevant and are interesting subjects for study, in contrast to prevailing opinion

Teaching old sensors New tricks: archetypes of intelligence

In this paper a generic intelligent sensor software architecture is described which builds upon the basic requirements of related industry standards (IEEE 1451 and SEVA BS- 7986). It incorporates specific functionalities such as real-time fault detection, drift compensation, adaptation to environmental changes and autonomous reconfiguration. The modular based structure of the intelligent sensor architecture provides enhanced flexibility in regard to the choice of specific algorithmic realizations. In this context, the particular aspects of fault detection and drift estimation are discussed. A mixed indicative/corrective fault detection approach is proposed while it is demonstrated that reversible/irreversible state dependent drift can be estimated using generic algorithms such as the EKF or on-line density estimators. Finally, a parsimonious density estimator is presented and validated through simulated and real data for use in an operating regime dependent fault detection framework

Improving adaptation and interpretability of a short-term traffic forecasting system

Traffic management is being more important than ever, especially in overcrowded big cities with over-pollution problems and with new unprecedented mobility changes. In this scenario, road-traffic prediction plays a key role within Intelligent Transportation Systems, allowing traffic managers to be able to anticipate and take the proper decisions. This paper aims to analyse the situation in a commercial real-time prediction system with its current problems and limitations. The analysis unveils the trade-off between simple parsimonious models and more complex models. Finally, we propose an enriched machine learning framework, Adarules, for the traffic prediction in real-time facing the problem as continuously incoming data streams with all the commonly occurring problems in such volatile scenario, namely changes in the network infrastructure and demand, new detection stations or failure ones, among others. The framework is also able to infer automatically the most relevant features to our end-task, including the relationships within the road network. Although the intention with the proposed framework is to evolve and grow with new incoming big data, however there is no limitation in starting to use it without any prior knowledge as it can starts learning the structure and parameters automatically from data. We test this predictive system in different real-work scenarios, and evaluate its performance integrating a multi-task learning paradigm for the sake of the traffic prediction task.Peer ReviewedPostprint (published version