Semi-automatic spline fitting of planar curvilinear profiles in digital images using the Hough transform

We develop a novel method for the recognition of curvilinear profiles in digital images. The proposed method, semi-automatic for both closed and open planar profiles, essentially consists of a preprocessing step exploiting an edge detection algorithm, and a main step involving the Hough transform technique. In the preprocessing step, a Canny edge detection algorithm is applied in order to obtain a reduced point set describing the profile curve to be reconstructed. Also, to identify in the profile possible sharp points like cusps, we additionally use an algorithm to find the approximated tangent vector of every edge point. In the subsequent main step, we then use a piecewisely defined Hough transform to locally recognize from the point set a low-degree piecewise polynomial curve. The final outcome of the algorithm is thus a spline curve approximating the underlined profile image. The output curve consists of polynomial pieces connected G^1 continuously, except in correspondence of the identified cusps, where the order of continu- ity is only C^0 , as expected. To illustrate effectiveness and efficiency of the new profile detection technique we present several numerical results dealing with detection of open and closed profiles in images of dif- ferent type, i.e., medical and photographic image

Coronal loop detection from solar images and extraction of salient contour groups from cluttered images.

This dissertation addresses two different problems: 1) coronal loop detection from solar images: and 2) salient contour group extraction from cluttered images. In the first part, we propose two different solutions to the coronal loop detection problem. The first solution is a block-based coronal loop mining method that detects coronal loops from solar images by dividing the solar image into fixed sized blocks, labeling the blocks as Loop or Non-Loop , extracting features from the labeled blocks, and finally training classifiers to generate learning models that can classify new image blocks. The block-based approach achieves 64% accuracy in IO-fold cross validation experiments. To improve the accuracy and scalability, we propose a contour-based coronal loop detection method that extracts contours from cluttered regions, then labels the contours as Loop and Non-Loop , and extracts geometric features from the labeled contours. The contour-based approach achieves 85% accuracy in IO-fold cross validation experiments, which is a 20% increase compared to the block-based approach. In the second part, we propose a method to extract semi-elliptical open curves from cluttered regions. Our method consists of the following steps: obtaining individual smooth contours along with their saliency measures; then starting from the most salient contour, searching for possible grouping options for each contour; and continuing the grouping until an optimum solution is reached. Our work involved the design and development of a complete system for coronal loop mining in solar images, which required the formulation of new Gestalt perceptual rules and a systematic methodology to select and combine them in a fully automated judicious manner using machine learning techniques that eliminate the need to manually set various weight and threshold values to define an effective cost function. After finding salient contour groups, we close the gaps within the contours in each group and perform B-spline fitting to obtain smooth curves. Our methods were successfully applied on cluttered solar images from TRACE and STEREO/SECCHI to discern coronal loops. Aerial road images were also used to demonstrate the applicability of our grouping techniques to other contour-types in other real applications

A survey of visual preprocessing and shape representation techniques

Many recent theories and methods proposed for visual preprocessing and shape representation are summarized. The survey brings together research from the fields of biology, psychology, computer science, electrical engineering, and most recently, neural networks. It was motivated by the need to preprocess images for a sparse distributed memory (SDM), but the techniques presented may also prove useful for applying other associative memories to visual pattern recognition. The material of this survey is divided into three sections: an overview of biological visual processing; methods of preprocessing (extracting parts of shape, texture, motion, and depth); and shape representation and recognition (form invariance, primitives and structural descriptions, and theories of attention)

Automated Extraction of Road Information from Mobile Laser Scanning Data

Effective planning and management of transportation infrastructure requires adequate geospatial data. Existing geospatial data acquisition techniques based on conventional route surveys are very time consuming, labor intensive, and costly. Mobile laser scanning (MLS) technology enables a rapid collection of enormous volumes of highly dense, irregularly distributed, accurate geo-referenced point cloud data in the format of three-dimensional (3D) point clouds. Today, more and more commercial MLS systems are available for transportation applications. However, many transportation engineers have neither interest in the 3D point cloud data nor know how to transform such data into their computer-aided model (CAD) formatted geometric road information. Therefore, automated methods and software tools for rapid and accurate extraction of 2D/3D road information from the MLS data are urgently needed. This doctoral dissertation deals with the development and implementation aspects of a novel strategy for the automated extraction of road information from the MLS data. The main features of this strategy include: (1) the extraction of road surfaces from large volumes of MLS point clouds, (2) the generation of 2D geo-referenced feature (GRF) images from the road-surface data, (3) the exploration of point density and intensity of MLS data for road-marking extraction, and (4) the extension of tensor voting (TV) for curvilinear pavement crack extraction. In accordance with this strategy, a RoadModeler prototype with three computerized algorithms was developed. They are: (1) road-surface extraction, (2) road-marking extraction, and (3) pavement-crack extraction. Four main contributions of this development can be summarized as follows. Firstly, a curb-based approach to road surface extraction with assistance of the vehicle’s trajectory is proposed and implemented. The vehicle’s trajectory and the function of curbs that separate road surfaces from sidewalks are used to efficiently separate road-surface points from large volume of MLS data. The accuracy of extracted road surfaces is validated with manually selected reference points. Secondly, the extracted road enables accurate detection of road markings and cracks for transportation-related applications in road traffic safety. To further improve computational efficiency, the extracted 3D road data are converted into 2D image data, termed as a GRF image. The GRF image of the extracted road enables an automated road-marking extraction algorithm and an automated crack detection algorithm, respectively. Thirdly, the automated road-marking extraction algorithm applies a point-density-dependent, multi-thresholding segmentation to the GRF image to overcome unevenly distributed intensity caused by the scanning range, the incidence angle, and the surface characteristics of an illuminated object. The morphological operation is then implemented to deal with the presence of noise and incompleteness of the extracted road markings. Fourthly, the automated crack extraction algorithm applies an iterative tensor voting (ITV) algorithm to the GRF image for crack enhancement. The tensor voting, a perceptual organization method that is capable of extracting curvilinear structures from the noisy and corrupted background, is explored and extended into the field of crack detection. The successful development of three algorithms suggests that the RoadModeler strategy offers a solution to the automated extraction of road information from the MLS data. Recommendations are given for future research and development to be conducted to ensure that this progress goes beyond the prototype stage and towards everyday use

Generalizable automated pixel-level structural segmentation of medical and biological data

Over the years, the rapid expansion in imaging techniques and equipments has driven the demand for more automation in handling large medical and biological data sets. A wealth of approaches have been suggested as optimal solutions for their respective imaging types. These solutions span various image resolutions, modalities and contrast (staining) mechanisms. Few approaches generalise well across multiple image types, contrasts or resolution. This thesis proposes an automated pixel-level framework that addresses 2D, 2D+t and 3D structural segmentation in a more generalizable manner, yet has enough adaptability to address a number of specific image modalities, spanning retinal funduscopy, sequential fluorescein angiography and two-photon microscopy. The pixel-level segmentation scheme involves: i ) constructing a phase-invariant orientation field of the local spatial neighbourhood; ii ) combining local feature maps with intensity-based measures in a structural patch context; iii ) using a complex supervised learning process to interpret the combination of all the elements in the patch in order to reach a classification decision. This has the advantage of transferability from retinal blood vessels in 2D to neural structures in 3D. To process the temporal components in non-standard 2D+t retinal angiography sequences, we first introduce a co-registration procedure: at the pairwise level, we combine projective RANSAC with a quadratic homography transformation to map the coordinate systems between any two frames. At the joint level, we construct a hierarchical approach in order for each individual frame to be registered to the global reference intra- and inter- sequence(s). We then take a non-training approach that searches in both the spatial neighbourhood of each pixel and the filter output across varying scales to locate and link microvascular centrelines to (sub-) pixel accuracy. In essence, this \link while extract" piece-wise segmentation approach combines the local phase-invariant orientation field information with additional local phase estimates to obtain a soft classification of the centreline (sub-) pixel locations. Unlike retinal segmentation problems where vasculature is the main focus, 3D neural segmentation requires additional exibility, allowing a variety of structures of anatomical importance yet with different geometric properties to be differentiated both from the background and against other structures. Notably, cellular structures, such as Purkinje cells, neural dendrites and interneurons, all display certain elongation along their medial axes, yet each class has a characteristic shape captured by an orientation field that distinguishes it from other structures. To take this into consideration, we introduce a 5D orientation mapping to capture these orientation properties. This mapping is incorporated into the local feature map description prior to a learning machine. Extensive performance evaluations and validation of each of the techniques presented in this thesis is carried out. For retinal fundus images, we compute Receiver Operating Characteristic (ROC) curves on existing public databases (DRIVE & STARE) to assess and compare our algorithms with other benchmark methods. For 2D+t retinal angiography sequences, we compute the error metrics ("Centreline Error") of our scheme with other benchmark methods. For microscopic cortical data stacks, we present segmentation results on both surrogate data with known ground-truth and experimental rat cerebellar cortex two-photon microscopic tissue stacks.Open Acces

AutoGraff: towards a computational understanding of graffiti writing and related art forms.

The aim of this thesis is to develop a system that generates letters and pictures with a style that is immediately recognizable as graffiti art or calligraphy. The proposed system can be used similarly to, and in tight integration with, conventional computer-aided geometric design tools and can be used to generate synthetic graffiti content for urban environments in games and in movies, and to guide robotic or fabrication systems that can materialise the output of the system with physical drawing media. The thesis is divided into two main parts. The first part describes a set of stroke primitives, building blocks that can be combined to generate different designs that resemble graffiti or calligraphy. These primitives mimic the process typically used to design graffiti letters and exploit well known principles of motor control to model the way in which an artist moves when incrementally tracing stylised letter forms. The second part demonstrates how these stroke primitives can be automatically recovered from input geometry defined in vector form, such as the digitised traces of writing made by a user, or the glyph outlines in a font. This procedure converts the input geometry into a seed that can be transformed into a variety of calligraphic and graffiti stylisations, which depend on parametric variations of the strokes

Image Analysis via Applied Harmonic Analysis : Perceptual Image Quality Assessment, Visual Servoing, and Feature Detection

Certain systems of analyzing functions developed in the field of applied harmonic analysis are specifically designed to yield efficient representations of structures which are characteristic of common classes of two-dimensional signals, like images. In particular, functions in these systems are typically sensitive to features that define the geometry of a signal, like edges and curves in the case of images. These properties make them ideal candidates for a wide variety of tasks in image processing and image analysis. This thesis discusses three recently developed approaches to utilizing systems of wavelets, shearlets, and alpha-molecules in specific image analysis tasks. First, a perceptual image similarity measure is introduced that is solely based on the coefficients obtained from six discrete Haar wavelet filters but yields state of the art correlations with human opinion scores on large benchmark databases. The second application concerns visual servoing, which is a technique for controlling the motion of a robot by using feedback from a visual sensor. In particular, it will be investigated how the coefficients yielded by discrete wavelet and shearlet transforms can be used as the visual features that control the motion of a robot with six degrees of freedom. Finally, a novel framework for the detection and characterization of features such as edges, ridges, and blobs in two-dimensional images is presented and evaluated in extensive numerical experiments. Here, versatile and robust feature detectors are obtained by exploiting the special symmetry properties of directionally sensitive analyzing functions in systems created within the recently introduced alpha-molecule framework

Image Analysis via Applied Harmonic Analysis : Perceptual Image Quality Assessment, Visual Servoing, and Feature Detection

Certain systems of analyzing functions developed in the field of applied harmonic analysis are specifically designed to yield efficient representations of structures which are characteristic of common classes of two-dimensional signals, like images. In particular, functions in these systems are typically sensitive to features that define the geometry of a signal, like edges and curves in the case of images. These properties make them ideal candidates for a wide variety of tasks in image processing and image analysis. This thesis discusses three recently developed approaches to utilizing systems of wavelets, shearlets, and alpha-molecules in specific image analysis tasks. First, a perceptual image similarity measure is introduced that is solely based on the coefficients obtained from six discrete Haar wavelet filters but yields state of the art correlations with human opinion scores on large benchmark databases. The second application concerns visual servoing, which is a technique for controlling the motion of a robot by using feedback from a visual sensor. In particular, it will be investigated how the coefficients yielded by discrete wavelet and shearlet transforms can be used as the visual features that control the motion of a robot with six degrees of freedom. Finally, a novel framework for the detection and characterization of features such as edges, ridges, and blobs in two-dimensional images is presented and evaluated in extensive numerical experiments. Here, versatile and robust feature detectors are obtained by exploiting the special symmetry properties of directionally sensitive analyzing functions in systems created within the recently introduced alpha-molecule framework

Multi-scale active shape description in medical imaging

Shape description in medical imaging has become an increasingly important research field in recent years. Fast and high-resolution image acquisition methods like Magnetic Resonance (MR) imaging produce very detailed cross-sectional images of the human body - shape description is then a post-processing operation which abstracts quantitative descriptions of anatomically relevant object shapes. This task is usually performed by clinicians and other experts by first segmenting the shapes of interest, and then making volumetric and other quantitative measurements. High demand on expert time and inter- and intra-observer variability impose a clinical need of automating this process. Furthermore, recent studies in clinical neurology on the correspondence between disease status and degree of shape deformations necessitate the use of more sophisticated, higher-level shape description techniques. In this work a new hierarchical tool for shape description has been developed, combining two recently developed and powerful techniques in image processing: differential invariants in scale-space, and active contour models. This tool enables quantitative and qualitative shape studies at multiple levels of image detail, exploring the extra image scale degree of freedom. Using scale-space continuity, the global object shape can be detected at a coarse level of image detail, and finer shape characteristics can be found at higher levels of detail or scales. New methods for active shape evolution and focusing have been developed for the extraction of shapes at a large set of scales using an active contour model whose energy function is regularized with respect to scale and geometric differential image invariants. The resulting set of shapes is formulated as a multiscale shape stack which is analysed and described for each scale level with a large set of shape descriptors to obtain and analyse shape changes across scales. This shape stack leads naturally to several questions in regard to variable sampling and appropriate levels of detail to investigate an image. The relationship between active contour sampling precision and scale-space is addressed. After a thorough review of modem shape description, multi-scale image processing and active contour model techniques, the novel framework for multi-scale active shape description is presented and tested on synthetic images and medical images. An interesting result is the recovery of the fractal dimension of a known fractal boundary using this framework. Medical applications addressed are grey-matter deformations occurring for patients with epilepsy, spinal cord atrophy for patients with Multiple Sclerosis, and cortical impairment for neonates. Extensions to non-linear scale-spaces, comparisons to binary curve and curvature evolution schemes as well as other hierarchical shape descriptors are discussed

Geometric and photometric affine invariant image registration

This thesis aims to present a solution to the correspondence problem for the registration of wide-baseline images taken from uncalibrated cameras. We propose an affine invariant descriptor that combines the geometry and photometry of the scene to find correspondences between both views. The geometric affine invariant component of the descriptor is based on the affine arc-length metric, whereas the photometry is analysed by invariant colour moments. A graph structure represents the spatial distribution of the primitive features; i.e. nodes correspond to detected high-curvature points, whereas arcs represent connectivities by extracted contours. After matching, we refine the search for correspondences by using a maximum likelihood robust algorithm. We have evaluated the system over synthetic and real data. The method is endemic to propagation of errors introduced by approximations in the system.BAE SystemsSelex Sensors and Airborne System