Estimation of CDOM in Inland Waters via Water Bio-Optical Properties Using a Remote Sensing Approach

Monitoring of Colored dissolved organic matter (CDOM) in inland waters provides important information for tracing carbon cycle at the land-water interface and studying aquatic ecosystem. Remote sensing estimation of CDOM in the inland waters offers an alternative approach to field samplings in examining CDOM spatial-temporal dynamics. However, CDOM retrieval is a challenge due to the lack of algorithm for resolving bottom effect in shallow inland waters. Moreover, an effective approach based on multi-spectral, high spatial resolution and global coverage satellite images is in urgent need. To resolve these challenges, shallow water bio-optical properties (SBOP) algorithm was developed to overcome bottom reflectance effect on the total water leaving reflectance in shallow inland water. SBOP algorithm included the bottom reflectance in building underwater light transfer model. It was designed based on the field spectral data from four cruises in Lake Huron. SBOP algorithm had an obviously advantage over previous deep water CDOM algorithm (e.g. QAA-CDOM). In this study, Landsat-8 multi-spectral satellite imagery was selected to derive CDOM spatial-temporal dynamics in lake and river waters. The coastal blue band (443 nm), global coverage and high spatial resolution (30 m) of Landsat-8 images offered suitable data for inland water CDOM mapping. The SBOP algorithm was applied on Landsat-8 images in broad ranges of inland waters with high accuracy (Lake Huron (R2 = 0.87), 14 northeastern freshwater lakes (R2 = 0.80), and 6 large Arctic Rivers (R2 = 0.87)). Both the spatial patterns and seasonal dynamics were derived to study the multiple factors’ impact on terrestrially derived CDOM input to the rivers and lakes, including river discharge, watershed landcover, and temperature. This new satellite approach of CDOM estimation in inland waters provided high accuracy spatial-temporal information for studying land-water carbon cycle and aquatic environment

Application of machine learning techniques to derive sea water turbidity from Sentinel-2 imagery

Earth Observation (EO) from satellites has the potential to provide comprehensive, rapid and inexpensive information about water bodies, integrating in situ measurements. Traditional methods to retrieve optically active water quality parameters from satellite data are based on semiempirical models relying on few bands, which often revealed to be site and season specific. The use of machine learning (ML) for remotely sensed water quality estimation has spread in recent years thanks to the advances in algorithm development and computing power. These models allow to exploit the wealth of spectral information through more flexible relationships and are less affected by atmospheric and other background factors. The present study explores the use of Sentinel-2 MultiSpectral Instrument (MSI) Level-1C Top of Atmosphere spectral radiance to derive water turbidity, through application of machine learning techniques. A dataset of 222 combination of turbidity measurements, collected in the North Tyrrhenian Sea – Italy from 2015 to 2021, and values of the 13 spectral bands in the pixel corresponding to the sample location was used. Two regression techniques were tested and compared: a Stepwise Linear Regression (SLR) and a Polynomial Kernel Regression. The two models show accurate and similar performance (R2 = 0.736, RMSE = 2.03 NTU, MAE = 1.39 NTU for the SLR and R2 = 0.725, RMSE = 2.07 NTU, MAE = 1.40 NTU for the Kernel). A band importance analysis revealed the contribution of the different spectral bands and the main role of the red-edge range. The work shows that it is possible to reach a good accuracy in turbidity estimation from MSI TOA reflectance using ML models, fed by the whole spectrum of available bands, although the possible generation of errors related to atmospheric effect in turbidity estimates was not evaluated. Comparison between turbidity estimates obtained from the models with turbidity data from Copernicus CMEMS dataset named ‘Mediterranean Sea, Bio-Geo-Chemical, L3, daily observation’ produced consistent results. Finally, turbidity maps from satellite imagery were produced for the study area, showing the ability of the models to catch extreme events

NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms

The 2017–2027 National Academies' Decadal Survey, Thriving on Our Changing Planet, recommended Surface Biology and Geology (SBG) as a “Designated Targeted Observable” (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380–2500 nm; ~30 m pixel resolution) hyperspectral (imaging spectroscopy) and multispectral midwave and thermal infrared (MWIR: 3–5 μm; TIR: 8–12 μm; ~60 m pixel resolution) measurements with sub-monthly temporal revisits over terrestrial, freshwater, and coastal marine habitats. To address the various mission design needs, an SBG Algorithms Working Group of multidisciplinary researchers has been formed to review and evaluate the algorithms applicable to the SBG DO across a wide range of Earth science disciplines, including terrestrial and aquatic ecology, atmospheric science, geology, and hydrology. Here, we summarize current state-of-the-practice VSWIR and TIR algorithms that use airborne or orbital spectral imaging observations to address the SBG DO priorities identified by the Decadal Survey: (i) terrestrial vegetation physiology, functional traits, and health; (ii) inland and coastal aquatic ecosystems physiology, functional traits, and health; (iii) snow and ice accumulation, melting, and albedo; (iv) active surface composition (eruptions, landslides, evolving landscapes, hazard risks); (v) effects of changing land use on surface energy, water, momentum, and carbon fluxes; and (vi) managing agriculture, natural habitats, water use/quality, and urban development. We review existing algorithms in the following categories: snow/ice, aquatic environments, geology, and terrestrial vegetation, and summarize the community-state-of-practice in each category. This effort synthesizes the findings of more than 130 scientists

A Comprehensive Review on Water Quality Parameters Estimation Using Remote Sensing Techniques

Remotely sensed data can reinforce the abilities of water resources researchers and decision makers to monitor waterbodies more effectively. Remote sensing techniques have been widely used to measure the qualitative parameters of waterbodies (i.e., suspended sediments, colored dissolved organic matter (CDOM), chlorophyll-a, and pollutants). A large number of different sensors on board various satellites and other platforms, such as airplanes, are currently used to measure the amount of radiation at different wavelengths reflected from the water’s surface. In this review paper, various properties (spectral, spatial and temporal, etc.) of the more commonly employed spaceborne and airborne sensors are tabulated to be used as a sensor selection guide. Furthermore, this paper investigates the commonly used approaches and sensors employed in evaluating and quantifying the eleven water quality parameters. The parameters include: chlorophyll-a (chl-a), colored dissolved organic matters (CDOM), Secchi disk depth (SDD), turbidity, total suspended sediments (TSS), water temperature (WT), total phosphorus (TP), sea surface salinity (SSS), dissolved oxygen (DO), biochemical oxygen demand (BOD) and chemical oxygen demand (COD)

Quantitative Mapping of Soil Property Based on Laboratory and Airborne Hyperspectral Data Using Machine Learning

Soil visible and near-infrared spectroscopy provides a non-destructive, rapid and low-cost approach to quantify various soil physical and chemical properties based on their reflectance in the spectral range of 400–2500 nm. With an increasing number of large-scale soil spectral libraries established across the world and new space-borne hyperspectral sensors, there is a need to explore methods to extract informative features from reflectance spectra and produce accurate soil spectroscopic models using machine learning. Features generated from regional or large-scale soil spectral data play a key role in the quantitative spectroscopic model for soil properties. The Land Use/Land Cover Area Frame Survey (LUCAS) soil library was used to explore PLS-derived components and fractal features generated from soil spectra in this study. The gradient-boosting method performed well when coupled with extracted features on the estimation of several soil properties. Transfer learning based on convolutional neural networks (CNNs) was proposed to make the model developed from laboratory data transferable for airborne hyperspectral data. The soil clay map was successfully derived using HyMap imagery and the fine-tuned CNN model developed from LUCAS mineral soils, as deep learning has the potential to learn transferable features that generalise from the source domain to target domain. The external environmental factors like the presence of vegetation restrain the application of imaging spectroscopy. The reflectance data can be transformed into a vegetation suppressed domain with a force invariance approach, the performance of which was evaluated in an agricultural area using CASI airborne hyperspectral data. However, the relationship between vegetation and acquired spectra is complicated, and more efforts should put on removing the effects of external factors to make the model transferable from one sensor to another.:Abstract I Kurzfassung III Table of Contents V List of Figures IX List of Tables XIII List of Abbreviations XV 1 Introduction 1 1.1 Motivation 1 1.2 Soil spectra from different platforms 2 1.3 Soil property quantification using spectral data 4 1.4 Feature representation of soil spectra 5 1.5 Objectives 6 1.6 Thesis structure 7 2 Combining Partial Least Squares and the Gradient-Boosting Method for Soil Property Retrieval Using Visible Near-Infrared Shortwave Infrared Spectra 9 2.1 Abstract 10 2.2 Introduction 10 2.3 Materials and methods 13 2.3.1 The LUCAS soil spectral library 13 2.3.2 Partial least squares algorithm 15 2.3.3 Gradient-Boosted Decision Trees 15 2.3.4 Calculation of relative variable importance 16 2.3.5 Assessment 17 2.4 Results 17 2.4.1 Overview of the spectral measurement 17 2.4.2 Results of PLS regression for the estimation of soil properties 19 2.4.3 Results of PLS-GBDT for the estimation of soil properties 21 2.4.4 Relative important variables derived from PLS regression and the gradient-boosting method 24 2.5 Discussion 28 2.5.1 Dimension reduction for high-dimensional soil spectra 28 2.5.2 GBDT for quantitative soil spectroscopic modelling 29 2.6 Conclusions 30 3 Quantitative Retrieval of Organic Soil Properties from Visible Near-Infrared Shortwave Infrared Spectroscopy Using Fractal-Based Feature Extraction 31 3.1 Abstract 32 3.2 Introduction 32 3.3 Materials and Methods 35 3.3.1 The LUCAS topsoil dataset 35 3.3.2 Fractal feature extraction method 37 3.3.3 Gradient-boosting regression model 37 3.3.4 Evaluation 41 3.4 Results 42 3.4.1 Fractal features for soil spectroscopy 42 3.4.2 Effects of different step and window size on extracted fractal features 45 3.4.3 Modelling soil properties with fractal features 47 3.4.3 Comparison with PLS regression 49 3.5 Discussion 51 3.5.1 The importance of fractal dimension for soil spectra 51 3.5.2 Modelling soil properties with fractal features 52 3.6 Conclusions 53 4 Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery 55 4.1 Abstract 55 4.2 Introduction 56 4.3 Materials and Methods 59 4.3.1 Datasets 59 4.3.2 Methods 62 4.3.3 Assessment 67 4.4 Results and Discussion 67 4.4.1 Interpretation of mineral and organic soils from LUCAS dataset 67 4.4.2 1D-CNN and spectral index for LUCAS soil clay content estimation 69 4.4.3 Application of transfer learning for soil clay content mapping using the pre-trained 1D-CNN model 72 4.4.4 Comparison between spectral index and transfer learning 74 4.4.5 Large-scale soil spectral library for digital soil mapping at the local scale using hyperspectral imagery 75 4.5 Conclusions 75 5 A Case Study of Forced Invariance Approach for Soil Salinity Estimation in Vegetation-Covered Terrain Using Airborne Hyperspectral Imagery 77 5.1 Abstract 78 5.2 Introduction 78 5.3 Materials and Methods 81 5.3.1 Study area of Zhangye Oasis 81 5.3.2 Data description 82 5.3.3 Methods 83 5.3.3 Model performance assessment 85 5.4 Results and Discussion 86 5.4.1 The correlation between NDVI and soil salinity 86 5.4.2 Vegetation suppression performance using the Forced Invariance Approach 86 5.4.3 Estimation of soil properties using airborne hyperspectral data 88 5.5 Conclusions 90 6 Conclusions and Outlook 93 Bibliography 97 Acknowledgements 11

Coastal and Inland Aquatic Data Products for the Hyperspectral Infrared Imager (HyspIRI)

The HyspIRI Aquatic Studies Group (HASG) has developed a conceptual list of data products for the HyspIRI mission to support aquatic remote sensing of coastal and inland waters. These data products were based on mission capabilities, characteristics, and expected performance. The topic of coastal and inland water remote sensing is very broad. Thus, this report focuses on aquatic data products to keep the scope of this document manageable. The HyspIRI mission requirements already include the global production of surface reflectance and temperature. Atmospheric correction and surface temperature algorithms, which are critical to aquatic remote sensing, are covered in other mission documents. Hence, these algorithms and their products were not evaluated in this report. In addition, terrestrial products (e.g., land use land cover, dune vegetation, and beach replenishment) were not considered. It is recognized that coastal studies are inherently interdisciplinary across aquatic and terrestrial disciplines. However, products supporting the latter are expected to already be evaluated by other components of the mission. The coastal and inland water data products that were identified by the HASG, covered six major environmental and ecological areas for scientific research and applications: wetlands, shoreline processes, the water surface, the water column, bathymetry and benthic cover types. Accordingly, each candidate product was evaluated for feasibility based on the HyspIRI mission characteristics and whether it was unique and relevant to the HyspIRI science objectives

HIRIS (High-Resolution Imaging Spectrometer: Science opportunities for the 1990s. Earth observing system. Volume 2C: Instrument panel report

The high-resolution imaging spectrometer (HIRIS) is an Earth Observing System (EOS) sensor developed for high spatial and spectral resolution. It can acquire more information in the 0.4 to 2.5 micrometer spectral region than any other sensor yet envisioned. Its capability for critical sampling at high spatial resolution makes it an ideal complement to the MODIS (moderate-resolution imaging spectrometer) and HMMR (high-resolution multifrequency microwave radiometer), lower resolution sensors designed for repetitive coverage. With HIRIS it is possible to observe transient processes in a multistage remote sensing strategy for Earth observations on a global scale. The objectives, science requirements, and current sensor design of the HIRIS are discussed along with the synergism of the sensor with other EOS instruments and data handling and processing requirements

Chemometric Modelling and Remote Sensing of Arable Land Soil Organic Carbon as Mediterranean Land Degradation Indicator - A Case Study in Southern Italy

The application of chemometric models for the quantitative estimation of soil organic matter (SOM) from laboratory reflectance data from samples taken on the regional/national level from Italian sites is explored in Part 1 of this report. In addition, the possibility to transfer the developed models from the spectral resolution of lab/field instrumentation to the one of operational satellite systems has been evaluated, by using the laboratory spectra to simulate the respective soil reflectance signatures of Landsat-TM, MODIS and MERIS. Soil physical and chemical laboratory analyses results were provided by the JRC-IES SOIL action (formerly JRC FP6 MOSES action). The 376 soil samples, used in this study, were collected for previous projects of the IES SOIL action and its partners within a wide range of environmental settings in Italy. Reflectance measurements were obtained on disturbed soil samples using an ASD Field Spec Pro spectro-radiometer. Data transformation methods (standardisation, vector-normalisation and first and second order derivatives) have been applied on the spectral data. The transformed spectral data have been used for the prediction of SOM and carbonate content using the partial least squares regression (PLSR). The results (R2 between 0.57 and 0.8) demonstrate the successful application of reflectance spectroscopy combined with chemometric modelling for the estimation of SOM and carbonate content. The calibration models demonstrated a tolerable stability over a variety of different soil types, which is a positive factor for opening the opportunity to use this methodology for monitoring larger areas. Furthermore it could be shown, that the spectral resolution of the MERIS sensor is sufficient for approximation of the SOC/SOM content from pure soil spectra. Consequently the second part of the study focused on the use of MERIS satellite data for the estimation of soil organic carbon content of bare soils at regional scale. The study concentrated on the Apulia region, where we had high density of available field sampling sites, and on parts of the coastal areas of the Abruzzi region South of Pescara, which are known to be amongst the more critical areas in Italy suffering from land degradation problems and desertification risk. For specific morphological-lithological units simple spectral models, based on soil colour and spectral shape attributes, were built to derive soil organic carbon content. In order to apply these models to MERIS satellite data, a time series of images covering the years 2003 and 2004 were acquired for Southern Italy. Pre-processing of image data aimed at extracting those pixels with negligible vegetation abundance at least at one date of observation per year, i.e. practically showing pure bare soil signatures only, and consisted of: ¿ geometrical co-registration and superposition of images from different acquisition dates ¿ the derivation of minimum vegetation composites for each year applying simple minimum value criteria for MERIS vegetation indices ¿ the determination of soil and vegetation abundance at sub-pixel level based on spectral mixture modelling. ¿ the removal of residual vegetation influence from image spectra Soil colour attributes (soil lightness, R coordinate of R-G-B model) and coefficients of a second order polynomial fitted through the pixel reflectance signatures were derived from the minimum vegetation composites of both years. The spatial distribution of soil organic carbon was estimated for each year within specific morphological-lithological units in the Apulia region. In addition models could be applied to other regions in Southern Italy. Estimation results showed good agreement with independent field data and the pedo-transfer rules based estimations of Jones et. al. (2004, 2005).JRC.H.7-Land management and natural hazard

Hyperspectral monitoring of green roof vegetation health state in sub-mediterranean climate: preliminary results

In urban and industrial environments, the constant increase of impermeable surfaces has produced drastic changes in the natural hydrological cycle. Decreasing green areas not only produce negative effects from a hydrological-hydraulic perspective, but also from an energy point of view, modifying the urban microclimate and generating, as shown in the literature, heat islands in our cities. In this context, green infrastructures may represent an environmental compensation action that can be used to re-equilibrate the hydrological and energy balance and reduce the impact of pollutant load on receiving water bodies. To ensure that a green infrastructure will work properly, vegetated areas have to be continuously monitored to verify their health state. This paper presents a ground spectroscopy monitoring survey of a green roof installed at the University of Calabria fulfilled via the acquisition and analysis of hyperspectral data. This study is part of a larger research project financed by European Structural funds aimed at understanding the influence of green roofs on rainwater management and energy consumption for air conditioning in the Mediterranean area. Reflectance values were acquired with a field-portable spectroradiometer that operates in the range of wavelengths 350–2500 nm. The survey was carried out during the time period November 2014–June 2015 and data were acquired weekly. Climatic, thermo-physical, hydrological and hydraulic quantities were acquired as well and related to spectral data. Broadband and narrowband spectral indices, related to chlorophyll content and to chlorophyll–carotenoid ratio, were computed. The two narrowband indices NDVI705 and SIPI turned out to be the most representative indices to detect the plant health status