Ophthalmologic Image Registration Based on Shape-Context: Application to Fundus Autofluorescence (FAF) Images

Online access to subscriber only at http://www.actapress.com/Content_Of_Proceeding.aspx?ProceedingID=494International audienceA novel registration algorithm, which was developed in order to facilitate ophthalmologic image processing, is presented in this paper. It has been evaluated on FAF images, which present low Si gnal/Noise Ratio (SNR) and variations in dynamic grayscale range. These characteristics complicate the registration process and cause a failure to area-based registration techniques [1, 2] . Our method is based on shape-context theory [3] . In the first step, images are enhanced by Gaussian model based histog ram modification. Features are extracted in the next step by morphological operators, which are used to detect an approximation of vascular tree from both reference and floating images. Simplified medial axis of vessels is then calculated. From each image, a set of control points called Bifurcation Points (BPs) is extracted from the medial axis through a new fast algorithm. Radial histogram is formed for each BP using the medial axis. The Chi2 distance is measured between two sets of BPs based on radial histogram. Hungarian algorithm is applied to assign the correspondence among BPs from reference and floating images. The algorithmic robustness is evaluated by mutual information criteria between manual registration considered as Ground Truth and automatic one

A Computational Framework for Ultrastructural Mapping of Neural Circuitry

Circuitry mapping of metazoan neural systems is difficult because canonical neural regions (regions containing one or more copies of all components) are large, regional borders are uncertain, neuronal diversity is high, and potential network topologies so numerous that only anatomical ground truth can resolve them. Complete mapping of a specific network requires synaptic resolution, canonical region coverage, and robust neuronal classification. Though transmission electron microscopy (TEM) remains the optimal tool for network mapping, the process of building large serial section TEM (ssTEM) image volumes is rendered difficult by the need to precisely mosaic distorted image tiles and register distorted mosaics. Moreover, most molecular neuronal class markers are poorly compatible with optimal TEM imaging. Our objective was to build a complete framework for ultrastructural circuitry mapping. This framework combines strong TEM-compliant small molecule profiling with automated image tile mosaicking, automated slice-to-slice image registration, and gigabyte-scale image browsing for volume annotation. Specifically we show how ultrathin molecular profiling datasets and their resultant classification maps can be embedded into ssTEM datasets and how scripted acquisition tools (SerialEM), mosaicking and registration (ir-tools), and large slice viewers (MosaicBuilder, Viking) can be used to manage terabyte-scale volumes. These methods enable large-scale connectivity analyses of new and legacy data. In well-posed tasks (e.g., complete network mapping in retina), terabyte-scale image volumes that previously would require decades of assembly can now be completed in months. Perhaps more importantly, the fusion of molecular profiling, image acquisition by SerialEM, ir-tools volume assembly, and data viewers/annotators also allow ssTEM to be used as a prospective tool for discovery in nonneural systems and a practical screening methodology for neurogenetics. Finally, this framework provides a mechanism for parallelization of ssTEM imaging, volume assembly, and data analysis across an international user base, enhancing the productivity of a large cohort of electron microscopists

Incorporating spatial information for microaneurysm detection in retinal images

The presence of microaneurysms(MAs) in retinal images is a pathognomonic sign of Diabetic Retinopathy (DR). This is one of the leading causes of blindness in the working population worldwide. This paper introduces a novel algorithm that combines information from spatial views of the retina for the purpose of MA detection. Most published research in the literature has addressed the problem of detecting MAs from single retinal images. This work proposes the incorporation of information from two spatial views during the detection process. The algorithm is evaluated using 160 images from 40 patients seen as part of a UK diabetic eye screening programme which contained 207 MAs. An improvement in performance compared to detection from an algorithm that relies on a single image is shown as an increase of 2% ROC score, hence demonstrating the potential of this method

Temporal registration of vessels in retinal images

Master'sMASTER OF SCIENC

A novel automated approach of multi-modality retinal image registration and fusion

Biomedical image registration and fusion are usually scene dependent, and require intensive computational effort. A novel automated approach of feature-based control point detection and area-based registration and fusion of retinal images has been successfully designed and developed. The new algorithm, which is reliable and time-efficient, has an automatic adaptation from frame to frame with few tunable threshold parameters. The reference and the to-be-registered images are from two different modalities, i.e. angiogram grayscale images and fundus color images. The relative study of retinal images enhances the information on the fundus image by superimposing information contained in the angiogram image. Through the thesis research, two new contributions have been made to the biomedical image registration and fusion area. The first contribution is the automatic control point detection at the global direction change pixels using adaptive exploratory algorithm. Shape similarity criteria are employed to match the control points. The second contribution is the heuristic optimization algorithm that maximizes Mutual-Pixel-Count (MPC) objective function. The initially selected control points are adjusted during the optimization at the sub-pixel level. A global maxima equivalent result is achieved by calculating MPC local maxima with an efficient computation cost. The iteration stops either when MPC reaches the maximum value, or when the maximum allowable loop count is reached. To our knowledge, it is the first time that the MPC concept has been introduced into biomedical image fusion area as the measurement criteria for fusion accuracy. The fusion image is generated based on the current control point coordinates when the iteration stops. The comparative study of the presented automatic registration and fusion scheme against Centerline Control Point Detection Algorithm, Genetic Algorithm, RMSE objective function, and other existing data fusion approaches has shown the advantage of the new approach in terms of accuracy, efficiency, and novelty

Location of the optic disc in scanning laser ophthalmoscope images and validation

In this thesis we propose two methods for optic disc (OD) localization in scanning laser ophthalmoscope (SLO) images. The methods share a locating phase, while differ in the OD segmentation. We tested the algorithms on a pilot of 50 images (1536x1536) from a Heildelberg SPECTRALIS SLO camera, annotated by four expert ophthalmologists. The second algorithm performs better than the first one achieving accuracy of 90%. We compared also our methods with a validated OD algorithm on fundus images

Retinal Image Registration and Comparison for Clinical Decision Support

Background For eye diseases, such as glaucoma and age-related macular degeneration (ARMD), involved in long-term degeneration procedure, longitudinal comparison of retinal images is a common step for reliable diagnosis of these kinds of diseases. Aims To provide a retinal image registration approach for longitudinal retinal image alignment and comparison. Method Two image registration solutions were proposed for facing different image qualities of retinal images to make the registration methods more robust and feasible in a clinical application system. Results Thirty pairs of longitudinal retinal images were used for the registration test. The experiments showed both solutions provided good performance for the accurate image registrations with efficiency. Conclusion We proposed a set of retinal image registration solutions for longitudinal retinal image observation and comparison targeting a clinical application environment