Ecophysiological traits of grasses: resolving the effects of photosynthetic pathway and phylogeny

C4 photosynthesis is an important example of convergent evolution in plants, having arisen in eudicots, monocots and diatoms. Comparisons between such diverse groups are confounded by phylogenetic and ecological differences, so that only broad generalisations can be made about the role of C4 photosynthesis in
determining ecophysiological traits. However, 60% of C4 species occur in the grasses (Poaceae) and molecular phylogenetic techniques confirm that there are between 8 and 17 independent origins of C4 photosynthesis in the Poaceae. In a screening experiment, we compared leaf physiology and growth traits across several major
independent C3 & C4 groups within the Poaceae, asking 1) which traits differ consistently between photosynthetic
types and 2) which traits differ consistently between clades within each photosynthetic type

Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens.

BACKGROUND: Plants deploy immune receptors to detect pathogen-derived molecules and initiate defense responses. Intracellular plant immune receptors called nucleotide-binding leucine-rich repeat (NLR) proteins contain a central nucleotide-binding (NB) domain followed by a series of leucine-rich repeats (LRRs), and are key initiators of plant defense responses. However, recent studies demonstrated that NLRs with non-canonical domain architectures play an important role in plant immunity. These composite immune receptors are thought to arise from fusions between NLRs and additional domains that serve as "baits" for the pathogen-derived effector proteins, thus enabling pathogen recognition. Several names have been proposed to describe these proteins, including "integrated decoys" and "integrated sensors". We adopt and argue for "integrated domains" or NLR-IDs, which describes the product of the fusion without assigning a universal mode of action. RESULTS: We have scanned available plant genome sequences for the full spectrum of NLR-IDs to evaluate the diversity of integrations of potential sensor/decoy domains across flowering plants, including 19 crop species. We manually curated wheat and brassicas and experimentally validated a subset of NLR-IDs in wild and cultivated wheat varieties. We have examined NLR fusions that occur in multiple plant families and identified that some domains show re-occurring integration across lineages. Domains fused to NLRs overlap with previously identified pathogen targets confirming that they act as baits for the pathogen. While some of the integrated domains have been previously implicated in disease resistance, others provide new targets for engineering durable resistance to plant pathogens. CONCLUSIONS: We have built a robust reproducible pipeline for detecting variable domain architectures in plant immune receptors across species. We hypothesize that NLR-IDs that we revealed provide clues to the host proteins targeted by pathogens, and that this information can be deployed to discover new sources of disease resistance

A molecular phylogenetic study of Deschampsia (Poaceae: Aveneae) inferred from nuclear ITS and plastid trnL sequence data: support for the recognition of Avenella and Vahlodea

The circumscription and phylogeny of Deschampsia were studied for the first time by parsimony analysis of nuclear ribosomal internal transcribed spacer (ITS) and plastid trnL intron sequences. The traditional sectional division based on morphology was not supported by sequence data, which showed differences between core Deschampsia s.str. (mainly represented by D. cespitosa), D. atropurpurea and D. flexuosa. Differences in the ITS marker included insertions in the sequence of D. atropurpurea; the trnL marker contained a deletion shared by all Deschampsia sequences, excluding D. atropurpurea and D. flexuosa, and an insertion in D. flexuosa. ITS sequences also differed in an insertion shared by Northern Hemisphere accessions. Both markers produced similar tree topologies but D. klossi, in spite of being morphologically close to Deschampsia s.str., fell with D. flexuosa outside the core of the genus in the trnL tree. Molecular evidence corroborates morphological and cytological data supporting exclusion of D. atropurpurea and D. flexuosa from Deschampsia and their treatment as separate genera. The position of D. klossi needs further investigation.Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentin

Sensitivity of the grassland-forest ecotone in East African open woodland savannah to historical rainfall variation

Abstract. Fossil pollen records provide key insight into the sensitivity of terrestrial ecosystems to climate change at longer time scales. However, tracing vegetation response to relatively modest historical climate fluctuations is often complicated by the overriding signature of anthropogenic landscape disturbance. Here we use high-resolution pollen data from a ~200 year lake-sediment record in open woodland savannah of Queen Elisabeth National Park (southwestern Uganda) to assess the sensitivity of the tropical lowland grassland-forest ecotone to historical fluctuations in annual rainfall on the order of 10% lasting several decades. Specifically we trace vegetation response to three episodes of increased regional rainfall dated to the 1820s–1830s, ca. 1865–1890 and from 1962 to around 2000. During inferred wetter episodes we find increases in the relative pollen abundance from trees and shrubs of moist semi-deciduous forest (Allophylus, Macaranga, Celtis, Alchornea), riparian forest (Phoenix reclinata) and savannah woodland (Myrica, Acalypha, Combretaceae/Melostomataceae) as well as local savannah taxa (Acacia, Rhus type vulgaris, Ficus), together creating strong temporary reductions in Poaceae pollen (to 45–55% of the terrestrial pollen sum). During intervening dry episodes, most notably the period ca. 1920–1962, Poaceae pollen attained values of 65–75%, and dryland herbs such as Commelina, Justicia type odora and Chenopodiaceae expanded at the expense of Asteraceae, Solanum-type, Swertia usumbarensis-type, and (modestly so) Urticaceae. Noting that the overall diversity of arboreal taxa remained high but their combined abundance low, we conclude that the landscape surrounding Lake Chibwera has been an open woodland savannah throughout the past 200 years, with historical rainfall variation exerting modest effects on local tree cover (mostly the abundance of Acacia and Ficus) and the prevalence of damp soil areas promoting Phoenix reclinata. The strong apparent expansion of true forest trees during wet episodes can be explained partly by enhanced pollen influx via upland streams. Pollen from exotic trees and other cultural indicators appears from the 1970s onwards, but their combined influence fails to mask the region's natural vegetation dynamics. </jats:p

Ecology of Sydney plant species : part 10, Monocotyledon families Lemnaceae to Zosteraceae

Ecological data in tabular form are provided on 668 plant species of the families Lemnaceae to Zosteraceae, 505 native and 163 exotics, occurring in the Sydney region, defined by the Central Coast and Central Tablelands botanical subdivisions of New South Wales (approximately bounded by Lake Macquarie, Orange, Crookwell and Nowra). Relevant Local Government Areas are Auburn, Ashfield, Bankstown, Bathurst, Baulkham Hills, Blacktown, Blayney, Blue Mountains, Botany, Burwood, Cabonne, Camden, Campbelltown, Canada Bay, Canterbury, Cessnock, Crookwell, Evans, Fairfield, Greater Lithgow, Gosford, Hawkesbury, Holroyd, Hornsby, Hunters Hill, Hurstville, Kiama, Kogarah, Ku-ring-gai, Lake Macquarie, Lane Cove, Leichhardt, Liverpool, Manly, Marrickville, Mosman, Mulwaree, North Sydney, Oberon, Orange, Parramatta, Penrith, Pittwater, Randwick, Rockdale, Ryde, Rylstone, Shellharbour, Shoalhaven, Singleton, South Sydney, Strathfield, Sutherland, Sydney City, Warringah, Waverley, Willoughby, Wingecarribee, Wollondilly, Wollongong, Woollahra and Wyong. The study area falls within the Sydney Basin IBRA Bioregion. Families are: Lemnaceae, Liliaceae, Lomandraceae, Luzuriagaceae, Najadaceae, Orchidaceae, Philydraceae, Phormiaceae, Poaceae, Pontederiaceae, Posidoniaceae, Potamogetonaceae, Restionaceae, Ripogonaceae, Smilacaceae, Sparganiaceae, Thismiaceae, Typhaceae, Uvulariaceae, Xanthorrhoeaceae, Xyridaceae, Zingiberaceae, Zosteraceae. Data are derived from herbarium collections, literature and field observations. It is hoped that the many, often alarming gaps in the information available will stimulate much-needed research into the ecology of more of the species. Information is provided so far as available to us for each plant species in the following categories: Life History: Growth form, vegetative spread, longevity, primary juvenile period (time from germination to fruiting), reproduction, flowering and fruiting times, fruit/seed type, dispersal, establishment and growth, fire response, interaction with other organisms. Distribution: Status/origin (native/naturalised), botanical subregions, distribution in Sydney area, selected locations. Habitat: Habitat, altitude, annual rainfall, typical local abundance, vegetation, substrate, exposure. Conservation: Conservation status

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids

Grasses are ancestrally tropical understory species whose current dominance in warm open habitats is linked to the evolution of C4 photosynthesis. C4 grasses maintain high rates of photosynthesis in warm and water stressed environments, and the syndrome is considered to induce niche shifts into these habitats while adaptation to cold ones may be compromised. Global biogeographic analyses of C4 grasses have, however, concentrated on diversity patterns, while paying little attention to distributional limits. Using phylogenetic contrast analyses, we compared macro-climatic distribution limits among ~1300 grasses from the subfamily Panicoideae, which includes 4/5 of the known photosynthetic transitions in grasses. We explored whether evolution of C4 photosynthesis correlates with niche expansions, niche changes, or stasis at subfamily level and within the two tribes Paniceae and Paspaleae. We compared the climatic extremes of growing season temperatures, aridity, and mean temperatures of the coldest months. We found support for all the known biogeographic distribution patterns of C4 species, these patterns were, however, formed both by niche expansion and niche changes. The only ubiquitous response to a change in the photosynthetic pathway within Panicoideae was a niche expansion of the C4 species into regions with higher growing season temperatures, but without a withdrawal from the inherited climate niche. Other patterns varied among the tribes, as macro-climatic niche evolution in the American tribe Paspaleae differed from the pattern supported in the globally distributed tribe Paniceae and at family level.Fil: Aagesen, Lone. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Biganzoli, Fernando. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Métodos Cuantitativos y Sistemas de Información; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Bena, María Julia. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Godoy Bürki, Ana Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Reinheimer, Renata. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; Argentin

Corrigendum to “Pollen-based paleoenvironmental and paleoclimatic change at Lake Ohrid (south-eastern Europe) during the past 500 ka” published in Biogeosciences, 13, 1423–1437, 2016

In this corrigendum we report an updated pollen record from the Lake Ohrid DEEP site spanning the past 500 ka whereby we have reprocessed and re-analyzed 104 samples affected by chemical procedure problems that occurred in one palynological laboratory. Firstly, these samples were affected by the use of wrong containers, causing in- adequate settling of particles at the set centrifuging speed. Secondly, HCl and HF treatments were combined without the prescribed intermediate centrifuging and decanting steps. The inaccuracy in the protocol resulted in the loss of smaller pollen grains and in the overrepresentation of bisaccate ones in most of the re-analyzed samples. We therefore provide an updated set of figures with the new data and have revised the description of the results, discussion and conclusions re- ported in Sadori et al. (2016) where necessary. We stress that the majority of the original results and conclusions remain valid, while the records’ reliability and resolution have improved as 12 samples that had been omitted in the original study because of low count sums are now included in the revised dataset (Sadori et al., 2018)