A parallel implementation of ant colony optimization

Ant Colony Optimization is a relatively new class of meta-heuristic search techniques for optimization problems. As it is a population-based technique that examines numerous solution options at each step of the algorithm, there are a variety of parallelization opportunities. In this paper, several parallel decomposition strategies are examined. These techniques are applied to a specific problem, namely the travelling salesman problem, with encouraging speedup and efficiency results.Full Tex

Re-engineering the ant colony optimization for CMP architectures

[EN] The ant colony optimization (ACO) is inspired by the behavior of real ants, and as a bioinspired method, its underlying computation is massively parallel by definition. This paper shows re-engineering strategies to migrate the ACO algorithm applied to the Traveling Salesman Problem to modern Intel-based multi- and many-core architectures in a step-by-step methodology. The paper provides detailed guidelines on how to optimize the algorithm for the intra-node (thread and vector) parallelization, showing the performance scalability along with the number of cores on different Intel architectures, reporting up to 5.5x speedup factor between the Intel Xeon Phi Knights Landing and Intel Xeon v2. Moreover, parallel efficiency is provided for all targeted architectures, finding that core load imbalance, memory bandwidth limitations, and NUMA effects on data placement are some of the key factors limiting performance. Finally, a distributed implementation is also presented, reaching up to 2.96x speedup factor when running the code on 3 nodes over the single-node counterpart version. In the latter case, the parallel efficiency is affected by the synchronization frequency, which also affects the quality of the solution found by the distributed implementation.This work was partially supported by the Fundación Séneca, Agencia de Ciencia y Tecnología de la Región de Murcia under Project 20813/PI/18, and by Spanish Ministry of Science, Innovation and Universities as well as European Commission FEDER funds under Grants TIN2015-66972-C5-3-R, RTI2018-098156-B-C53, TIN2016-78799-P (AEI/FEDER, UE), and RTC-2017-6389-5. We acknowledge the excellent work done by Victor Montesinos while he was doing a research internship supported by the University of Murcia.Cecilia-Canales, JM.; García Carrasco, JM. (2020). Re-engineering the ant colony optimization for CMP architectures. 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An Efficient Ant Colony Optimization Framework for HPC Environments

Financiado para publicación en acceso aberto: Universidade da Coruña/CISUG[Abstract] Combinatorial optimization problems arise in many disciplines, both in the basic sciences and in applied fields such as engineering and economics. One of the most popular combinatorial optimization methods is the Ant Colony Optimization (ACO) metaheuristic. Its parallel nature makes it especially attractive for implementation and execution in High Performance Computing (HPC) environments. Here we present a novel parallel ACO strategy making use of efficient asynchronous decentralized cooperative mechanisms. This strategy seeks to fulfill two objectives: (i) acceleration of the computations by performing the ants’ solution construction in parallel; (ii) convergence improvement through the stimulation of the diversification in the search and the cooperation between different colonies. The two main features of the proposal, decentralization and desynchronization, enable a more effective and efficient response in environments where resources are highly coupled. Examples of such infrastructures include both traditional HPC clusters, and also new distributed environments, such as cloud infrastructures, or even local computer networks. The proposal has been evaluated using the popular Traveling Salesman Problem (TSP), as a well-known NP-hard problem widely used in the literature to test combinatorial optimization methods. An exhaustive evaluation has been carried out using three medium and large size instances from the TSPLIB library, and the experiments show encouraging results with superlinear speedups compared to the sequential algorithm (e.g. speedups of 18 with 16 cores), and a very good scalability (experiments were performed with up to 384 cores improving execution time even at that scale).This work was supported by the Ministry of Science and Innovation of Spain (PID2019-104184RB-I00 / AEI / 10.13039/501100011033), and by Xunta de Galicia and FEDER funds of the EU (Centro de Investigación de Galicia accreditation 2019–2022, ref. ED431G 2019/01; Consolidation Program of Competitive Reference Groups, ref. ED431C 2021/30). JRB acknowledges funding from the Ministry of Science and Innovation of Spain MCIN / AEI / 10.13039/501100011033 through grant PID2020-117271RB-C22 (BIODYNAMICS), and from MCIN / AEI / 10.13039/501100011033 and “ERDF A way of making Europe” through grant DPI2017-82896-C2-2-R (SYNBIOCONTROL). Authors also acknowledge the Galician Supercomputing Center (CESGA) for the access to its facilities. Funding for open access charge: Universidade da Coruña/CISUGXunta de Galicia; ED431G 2019/01Xunta de Galicia; ED431C 2021/3

Parallel ant colony optimization for the training of cell signaling networks

[Abstract]: Acquiring a functional comprehension of the deregulation of cell signaling networks in disease allows progress in the development of new therapies and drugs. Computational models are becoming increasingly popular as a systematic tool to analyze the functioning of complex biochemical networks, such as those involved in cell signaling. CellNOpt is a framework to build predictive logic-based models of signaling pathways by training a prior knowledge network to biochemical data obtained from perturbation experiments. This training can be formulated as an optimization problem that can be solved using metaheuristics. However, the genetic algorithm used so far in CellNOpt presents limitations in terms of execution time and quality of solutions when applied to large instances. Thus, in order to overcome those issues, in this paper we propose the use of a method based on ant colony optimization, adapted to the problem at hand and parallelized using a hybrid approach. The performance of this novel method is illustrated with several challenging benchmark problems in the study of new therapies for liver cancer

Parallel ant algorithms for the minimum tardy task problem

Ant Colony Optimization algorithms are intrinsically distributed algorithms where independent agents are in charge of building solutions. Stigmergy or indirect communication is the way in which each agent learns from the experience of the whole colony. However, explicit communication and parallel models of ACO can be implemented directly on different parallel platforms. We do so, and apply the resulting algorithms to the Minimum Tardy Task Problem (MTTP), a scheduling problem that has been faced with other metaheuristics, e.g., evolutionary algorithms and canonical ant algorithms. The aim of this article is twofold. First, it shows a new instance generator for MTTP to deal with the concept of “problem class”; second, it reports some preliminary results of the implementation of two type of parallel ACO algorithms for solving novel and larger instances of MTTP.Eje: V - Workshop de agentes y sistemas inteligentesRed de Universidades con Carreras en Informática (RedUNCI

Ant Colony Optimization

Ant Colony Optimization (ACO) is the best example of how studies aimed at understanding and modeling the behavior of ants and other social insects can provide inspiration for the development of computational algorithms for the solution of difficult mathematical problems. Introduced by Marco Dorigo in his PhD thesis (1992) and initially applied to the travelling salesman problem, the ACO field has experienced a tremendous growth, standing today as an important nature-inspired stochastic metaheuristic for hard optimization problems. This book presents state-of-the-art ACO methods and is divided into two parts: (I) Techniques, which includes parallel implementations, and (II) Applications, where recent contributions of ACO to diverse fields, such as traffic congestion and control, structural optimization, manufacturing, and genomics are presented

Parallelization of Ant Colony Optimization via Area of Expertise Learning

Ant colony optimization algorithms have long been touted as providing an effective and efficient means of generating high quality solutions to NP-hard optimization problems. Unfortunately, while the structure of the algorithm is easy to parallelize, the nature and amount of communication required for parallel execution has meant that parallel implementations developed suffer from decreased solution quality, slower runtime performance, or both. This thesis explores a new strategy for ant colony parallelization that involves Area of Expertise (AOE) learning. The AOE concept is based on the idea that individual agents tend to gain knowledge of different areas of the search space when left to their own devices. After developing a sense of their own expertness on a portion of the problem domain, agents share information and incorporate knowledge from other agents without having to experience it first-hand. This thesis shows that when incorporated within parallel ACO and applied to multi-objective environments such as a gridworld, the use of AOE learning can be an effective and efficient means of coordinating the efforts of multiple ant colony agents working in tandem, resulting in increased performance. Based on the success of the AOE/ACO combination in gridworld, a similar configuration is applied to the single objective traveling salesman problem. Yet while it was hoped that AOE learning would allow for a fast and beneficial sharing of knowledge between colonies, this goal was not achieved, despite the efforts detailed within. The reason for this lack of performance is due to the nature of the TSP, whose single objective landscape discourages colonies from learning unique portions of the search space. Without this specialization, AOE was found to make parallel ACO faster than the use of a single large colony but less efficient than multiple independent colonies