Mathematical models for chemotaxis and their applications in self-organisation phenomena

Chemotaxis is a fundamental guidance mechanism of cells and organisms, responsible for attracting microbes to food, embryonic cells into developing tissues, immune cells to infection sites, animals towards potential mates, and mathematicians into biology. The Patlak-Keller-Segel (PKS) system forms part of the bedrock of mathematical biology, a go-to-choice for modellers and analysts alike. For the former it is simple yet recapitulates numerous phenomena; the latter are attracted to these rich dynamics. Here I review the adoption of PKS systems when explaining self-organisation processes. I consider their foundation, returning to the initial efforts of Patlak and Keller and Segel, and briefly describe their patterning properties. Applications of PKS systems are considered in their diverse areas, including microbiology, development, immunology, cancer, ecology and crime. In each case a historical perspective is provided on the evidence for chemotactic behaviour, followed by a review of modelling efforts; a compendium of the models is included as an Appendix. Finally, a half-serious/half-tongue-in-cheek model is developed to explain how cliques form in academia. Assumptions in which scholars alter their research line according to available problems leads to clustering of academics and the formation of "hot" research topics.Comment: 35 pages, 8 figures, Submitted to Journal of Theoretical Biolog

Trapping ACO applied to MRI of the Heart

The research presented here supports the ongoing need for automatic heart volume calculation through the identification of the left and right ventricles in MRI images. The need for automated heart volume calculation stems from the amount of time it takes to manually processes MRI images and required esoteric skill set. There are several methods for region detection such as Deep Neural Networks, Support Vector Machines and Ant Colony Optimization. In this research Ant Colony Optimization (ACO) will be the method of choice due to its efficiency and flexibility. There are many types of ACO algorithms using a variety of heuristics that provide advantages in different environments and knowledge domains. All ACO algorithms share a foundational attribute, a heuristic that acts in conjunction with pheromones. These heuristics can work in various ways, such as dictating dispersion or the interpretation of pheromones. In this research a novel heuristic to disperse and act on pheromone is presented. Further, ants are applied to more general problem than the normal objective of finding edges, highly qualified region detection. The reliable application of heuristic oriented algorithms is difficult in a diverse environment. Although the problem space here is limited to MRI images of the heart, there are significant difference among them: the topology of the heart is different by patient, the angle of the scans changes and the location of the heart is not known. A thorough experiment is conducted to support algorithm efficacy using randomized sampling with human subjects. It will be shown during the analysis the algorithm has both prediction power and robustness

Visual attention and swarm cognition for off-road robots

Tese de doutoramento, Informática (Engenharia Informática), Universidade de Lisboa, Faculdade de Ciências, 2011Esta tese aborda o problema da modelação de atenção visual no contexto de robôs autónomos todo-o-terreno. O objectivo de utilizar mecanismos de atenção visual é o de focar a percepção nos aspectos do ambiente mais relevantes à tarefa do robô. Esta tese mostra que, na detecção de obstáculos e de trilhos, esta capacidade promove robustez e parcimónia computacional. Estas são características chave para a rapidez e eficiência dos robôs todo-o-terreno. Um dos maiores desafios na modelação de atenção visual advém da necessidade de gerir o compromisso velocidade-precisão na presença de variações de contexto ou de tarefa. Esta tese mostra que este compromisso é resolvido se o processo de atenção visual for modelado como um processo auto-organizado, cuja operação é modulada pelo módulo de selecção de acção, responsável pelo controlo do robô. Ao fechar a malha entre o processo de selecção de acção e o de percepção, o último é capaz de operar apenas onde é necessário, antecipando as acções do robô. Para fornecer atenção visual com propriedades auto-organizadas, este trabalho obtém inspiração da Natureza. Concretamente, os mecanismos responsáveis pela capacidade que as formigas guerreiras têm de procurar alimento de forma auto-organizada, são usados como metáfora na resolução da tarefa de procurar, também de forma auto-organizada, obstáculos e trilhos no campo visual do robô. A solução proposta nesta tese é a de colocar vários focos de atenção encoberta a operar como um enxame, através de interacções baseadas em feromona. Este trabalho representa a primeira realização corporizada de cognição de enxame. Este é um novo campo de investigação que procura descobrir os princípios básicos da cognição, inspeccionando as propriedades auto-organizadas da inteligência colectiva exibida pelos insectos sociais. Logo, esta tese contribui para a robótica como disciplina de engenharia e para a robótica como disciplina de modelação, capaz de suportar o estudo do comportamento adaptável.Esta tese aborda o problema da modelação de atenção visual no contexto de robôs autónomos todo-o-terreno. O objectivo de utilizar mecanismos de atenção visual é o de focar a percepção nos aspectos do ambiente mais relevantes à tarefa do robô. Esta tese mostra que, na detecção de obstáculos e de trilhos, esta capacidade promove robustez e parcimónia computacional. Estas são características chave para a rapidez e eficiência dos robôs todo-o-terreno. Um dos maiores desafios na modelação de atenção visual advém da necessidade de gerir o compromisso velocidade-precisão na presença de variações de contexto ou de tarefa. Esta tese mostra que este compromisso é resolvido se o processo de atenção visual for modelado como um processo auto-organizado, cuja operação é modulada pelo módulo de selecção de acção, responsável pelo controlo do robô. Ao fechar a malha entre o processo de selecção de acção e o de percepção, o último é capaz de operar apenas onde é necessário, antecipando as acções do robô. Para fornecer atenção visual com propriedades auto-organizadas, este trabalho obtém inspi- ração da Natureza. Concretamente, os mecanismos responsáveis pela capacidade que as formi- gas guerreiras têm de procurar alimento de forma auto-organizada, são usados como metáfora na resolução da tarefa de procurar, também de forma auto-organizada, obstáculos e trilhos no campo visual do robô. A solução proposta nesta tese é a de colocar vários focos de atenção encoberta a operar como um enxame, através de interacções baseadas em feromona. Este trabalho representa a primeira realização corporizada de cognição de enxame. Este é um novo campo de investigação que procura descobrir os princípios básicos da cognição, ins- peccionando as propriedades auto-organizadas da inteligência colectiva exibida pelos insectos sociais. Logo, esta tese contribui para a robótica como disciplina de engenharia e para a robótica como disciplina de modelação, capaz de suportar o estudo do comportamento adaptável.Fundação para a Ciência e a Tecnologia (FCT,SFRH/BD/27305/2006); Laboratory of Agent Modelling (LabMag

Development and Evaluation of Sensor Concepts for Ageless Aerospace Vehicles: Report 3 - Design of the Concept Demonstrator

This report provides an outline of the essential features of a Structural Health Monitoring Concept Demonstrator (CD) that will be constructed during the next eight months. It is emphasized that the design cannot be considered to be complete, and that design work will continue in parallel with construction and testing. A major advantage of the modular design is that small modules of the system can be developed, tested and modified before a commitment is made to full system development. The CD is expected to develop and evolve for a number of years after its initial construction. This first stage will, of necessity, be relatively simple and have limited capabilities. Later developments will improve all aspects of the functionality of the system, including sensing, processing, communications, intelligence and response. The report indicates the directions this later development will take

Swarm intelligence: novel tools for optimization, feature extraction, and multi-agent system modeling

Abstract Animal swarms in nature are able to adapt to dynamic changes in their envi-ronment, and through cooperation they can solve problems that are crucial for their survival. Only by means of local interactions with other members of the swarm and with the environment, they can achieve a common goal more efficiently than it would be done by a single individual. This problem-solving behavior that results from the multiplicity of such interactions is referred to as Swarm Intelligence. The mathematical models of swarming behavior in nature were initially proposed to solve optimization problems. Nevertheless, this decentralized approach can be a valuable tool for a variety of applications, where emerging global patterns represent a solution to the task at hand. Methods for the solution of difficult computational problems based on Swarm Intelligence have been experimentally demonstrated and reported in the literature. However, a general framework that would facilitate their design does not exist yet. In this dissertation, a new general design methodology for Swarm Intelligence tools is proposed. By defining a discrete space in which the members of the swarm can move, and by modifying the rules of local interactions and setting the adequate objective function for solutions evaluation, the proposed methodology is tested in various domains. The dissertation presents a set of case studies, and focuses on two general approaches. One approach is to apply Swarm Intelligence as a tool for optimization and feature extraction, and the other approach is to model multi-agent systems such that they resemble swarms of animals in nature providing them with the ability to autonomously perform a task at hand. Artificial swarms are designed to be autonomous, scalable, robust, and adaptive to the changes in their environment. In this work, the methods that exploit one or more of these features are presented. First, the proposed methodology is validated in a real-world scenario seen as a combinatorial optimization problem. Then a set of novel tools for feature extraction, more precisely the adaptive edge detection and the broken-edge linking in digital images is proposed. A novel data clustering algorithm is also proposed and applied to image segmentation. Finally, a scalable algorithm based on the proposed methodology is developed for distributed task allocation in multi-agent systems, and applied to a swarm of robots. The newly proposed general methodology provides a guideline for future developers of the Swarm Intelligence tools. Los enjambres de animales en la naturaleza son capaces de adaptarse a cambios dinamicos en su entorno y, por medio de la cooperación, pueden resolver problemas ´ cruciales para su supervivencia. Unicamente por medio de interacciones locales con otros miembros del enjambre y con el entorno, pueden lograr un objetivo común de forma más eficiente que lo haría un solo individuo. Este comportamiento problema-resolutivo que es resultado de la multiplicidad de interacciones se denomina Inteligencia de Enjambre. Los modelos matemáticos de comportamiento de enjambres en entornos naturales fueron propuestos inicialmente para resolver problemas de optimización. Sin embargo, esta aproximación descentralizada puede ser una herramienta valiosa en una variedad de aplicaciones donde patrones globales emergentes representan una solución de las tareas actuales. Aunque en la literatura se muestra la utilidad de los métodos de Inteligencia de Enjambre, no existe un entorno de trabajo que facilite su diseño. En esta memoria de tesis proponemos una nueva metodologia general de diseño para herramientas de Inteligencia de Enjambre. Desarrollamos herramientas noveles que representan ejem-plos ilustrativos de su implementación. Probamos la metodología propuesta en varios dominios definiendo un espacio discreto en el que los miembros del enjambre pueden moverse, modificando las reglas de las interacciones locales y fijando la función objetivo adecuada para evaluar las soluciones. La memoria de tesis presenta un conjunto de casos de estudio y se centra en dos aproximaciones generales. Una aproximación es aplicar Inteligencia de Enjambre como herramienta de optimización y extracción de características mientras que la otra es modelar sistemas multi-agente de tal manera que se asemejen a enjambres de animales en la naturaleza a los que se les confiere la habilidad de ejecutar autónomamente la tarea. Los enjambres artificiales están diseñados para ser autónomos, escalables, robustos y adaptables a los cambios en su entorno. En este trabajo, presentamos métodos que explotan una o más de estas características. Primero, validamos la metodología propuesta en un escenario del mundo real visto como un problema de optimización combinatoria. Después, proponemos un conjunto de herramientas noveles para ex-tracción de características, en concreto la detección adaptativa de bordes y el enlazado de bordes rotos en imágenes digitales, y el agrupamiento de datos para segmentación de imágenes. Finalmente, proponemos un algoritmo escalable para la asignación distribuida de tareas en sistemas multi-agente aplicada a enjambres de robots. La metodología general recién propuesta ofrece una guía para futuros desarrolladores deherramientas de Inteligencia de Enjambre

Recent Advances in Multi Robot Systems

To design a team of robots which is able to perform given tasks is a great concern of many members of robotics community. There are many problems left to be solved in order to have the fully functional robot team. Robotics community is trying hard to solve such problems (navigation, task allocation, communication, adaptation, control, ...). This book represents the contributions of the top researchers in this field and will serve as a valuable tool for professionals in this interdisciplinary field. It is focused on the challenging issues of team architectures, vehicle learning and adaptation, heterogeneous group control and cooperation, task selection, dynamic autonomy, mixed initiative, and human and robot team interaction. The book consists of 16 chapters introducing both basic research and advanced developments. Topics covered include kinematics, dynamic analysis, accuracy, optimization design, modelling, simulation and control of multi robot systems

Computational intelligence approaches to robotics, automation, and control [Volume guest editors]

No abstract available