Randomized Algorithms for the Loop Cutset Problem

We show how to find a minimum weight loop cutset in a Bayesian network with high probability. Finding such a loop cutset is the first step in the method of conditioning for inference. Our randomized algorithm for finding a loop cutset outputs a minimum loop cutset after O(c 6^k kn) steps with probability at least 1 - (1 - 1/(6^k))^c6^k, where c > 1 is a constant specified by the user, k is the minimal size of a minimum weight loop cutset, and n is the number of vertices. We also show empirically that a variant of this algorithm often finds a loop cutset that is closer to the minimum weight loop cutset than the ones found by the best deterministic algorithms known

Graphical models for marked point processes based on local independence

A new class of graphical models capturing the dependence structure of events that occur in time is proposed. The graphs represent so-called local independences, meaning that the intensities of certain types of events are independent of some (but not necessarily all) events in the past. This dynamic concept of independence is asymmetric, similar to Granger non-causality, so that the corresponding local independence graphs differ considerably from classical graphical models. Hence a new notion of graph separation, called delta-separation, is introduced and implications for the underlying model as well as for likelihood inference are explored. Benefits regarding facilitation of reasoning about and understanding of dynamic dependencies as well as computational simplifications are discussed.Comment: To appear in the Journal of the Royal Statistical Society Series

Graphical Markov models, unifying results and their interpretation

Graphical Markov models combine conditional independence constraints with graphical representations of stepwise data generating processes.The models started to be formulated about 40 years ago and vigorous development is ongoing. Longitudinal observational studies as well as intervention studies are best modeled via a subclass called regression graph models and, especially traceable regressions. Regression graphs include two types of undirected graph and directed acyclic graphs in ordered sequences of joint responses. Response components may correspond to discrete or continuous random variables and may depend exclusively on variables which have been generated earlier. These aspects are essential when causal hypothesis are the motivation for the planning of empirical studies. To turn the graphs into useful tools for tracing developmental pathways and for predicting structure in alternative models, the generated distributions have to mimic some properties of joint Gaussian distributions. Here, relevant results concerning these aspects are spelled out and illustrated by examples. With regression graph models, it becomes feasible, for the first time, to derive structural effects of (1) ignoring some of the variables, of (2) selecting subpopulations via fixed levels of some other variables or of (3) changing the order in which the variables might get generated. Thus, the most important future applications of these models will aim at the best possible integration of knowledge from related studies.Comment: 34 Pages, 11 figures, 1 tabl

Concepts and a case study for a flexible class of graphical Markov models

With graphical Markov models, one can investigate complex dependences, summarize some results of statistical analyses with graphs and use these graphs to understand implications of well-fitting models. The models have a rich history and form an area that has been intensively studied and developed in recent years. We give a brief review of the main concepts and describe in more detail a flexible subclass of models, called traceable regressions. These are sequences of joint response regressions for which regression graphs permit one to trace and thereby understand pathways of dependence. We use these methods to reanalyze and interpret data from a prospective study of child development, now known as the Mannheim Study of Children at Risk. The two related primary features concern cognitive and motor development, at the age of 4.5 and 8 years of a child. Deficits in these features form a sequence of joint responses. Several possible risks are assessed at birth of the child and when the child reached age 3 months and 2 years.Comment: 21 pages, 7 figures, 7 tables; invited, refereed chapter in a boo

Constraint-based Causal Discovery for Non-Linear Structural Causal Models with Cycles and Latent Confounders

We address the problem of causal discovery from data, making use of the recently proposed causal modeling framework of modular structural causal models (mSCM) to handle cycles, latent confounders and non-linearities. We introduce {\sigma}-connection graphs ({\sigma}-CG), a new class of mixed graphs (containing undirected, bidirected and directed edges) with additional structure, and extend the concept of {\sigma}-separation, the appropriate generalization of the well-known notion of d-separation in this setting, to apply to {\sigma}-CGs. We prove the closedness of {\sigma}-separation under marginalisation and conditioning and exploit this to implement a test of {\sigma}-separation on a {\sigma}-CG. This then leads us to the first causal discovery algorithm that can handle non-linear functional relations, latent confounders, cyclic causal relationships, and data from different (stochastic) perfect interventions. As a proof of concept, we show on synthetic data how well the algorithm recovers features of the causal graph of modular structural causal models.Comment: Accepted for publication in Conference on Uncertainty in Artificial Intelligence 201

Graphical Markov models: overview

We describe how graphical Markov models started to emerge in the last 40 years, based on three essential concepts that had been developed independently more than a century ago. Sequences of joint or single regressions and their regression graphs are singled out as being best suited for analyzing longitudinal data and for tracing developmental pathways. Interpretations are illustrated using two sets of data and some of the more recent, important results for sequences of regressions are summarized.Comment: 22 pages, 9 figure