3,268 research outputs found
Evolution of statistical analysis in empirical software engineering research: Current state and steps forward
Software engineering research is evolving and papers are increasingly based
on empirical data from a multitude of sources, using statistical tests to
determine if and to what degree empirical evidence supports their hypotheses.
To investigate the practices and trends of statistical analysis in empirical
software engineering (ESE), this paper presents a review of a large pool of
papers from top-ranked software engineering journals. First, we manually
reviewed 161 papers and in the second phase of our method, we conducted a more
extensive semi-automatic classification of papers spanning the years 2001--2015
and 5,196 papers. Results from both review steps was used to: i) identify and
analyze the predominant practices in ESE (e.g., using t-test or ANOVA), as well
as relevant trends in usage of specific statistical methods (e.g.,
nonparametric tests and effect size measures) and, ii) develop a conceptual
model for a statistical analysis workflow with suggestions on how to apply
different statistical methods as well as guidelines to avoid pitfalls. Lastly,
we confirm existing claims that current ESE practices lack a standard to report
practical significance of results. We illustrate how practical significance can
be discussed in terms of both the statistical analysis and in the
practitioner's context.Comment: journal submission, 34 pages, 8 figure
In and out of Madagascar : dispersal to peripheral islands, insular speciation and diversification of Indian Ocean daisy trees (Psiadia, Asteraceae)
This study was supported by the European Union’s HOTSPOTS Training Network (MEST-2005-020561)Madagascar is surrounded by archipelagos varying widely in origin, age and structure. Although small and geologically young, these archipelagos have accumulated disproportionate numbers of unique lineages in comparison to Madagascar, highlighting the role of waif-dispersal and rapid in situ diversification processes in generating endemic biodiversity. We reconstruct the evolutionary and biogeographical history of the genus Psiadia (Asteraceae), a plant genus with near equal numbers of species in Madagascar and surrounding islands. Analyzing patterns and processes of diversification, we explain species accumulation on peripheral islands and aim to offer new insights on the origin and potential causes for diversification in the Madagascar and Indian Ocean Islands biodiversity hotspot. Our results provide support for an African origin of the group, with strong support for non-monophyly. Colonization of the Mascarenes took place by two evolutionary distinct lineages from Madagascar, via two independent dispersal events, each unique for their spatial and temporal properties. Significant shifts in diversification rate followed regional expansion, resulting in co-occurring and phenotypically convergent species on high-elevation volcanic slopes. Like other endemic island lineages, Psiadia have been highly successful in dispersing to and radiating on isolated oceanic islands, typified by high habitat diversity and dynamic ecosystems fuelled by continued geological activity. Results stress the important biogeographical role for Rodrigues in serving as an outlying stepping stone from which regional colonization took place. We discuss how isolated volcanic islands contribute to regional diversity by generating substantial numbers of endemic species on short temporal scales. Factors pertaining to the mode and tempo of archipelago formation and its geographical isolation strongly govern evolutionary pathways available for species diversification, and the potential for successful diversification of dispersed lineages, therefore, appears highly dependent on the timing of arrival, as habitat and resource properties change dramatically over the course of oceanic island evolution.Publisher PDFPeer reviewe
ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R
We introduce the C++ application and R package ranger. The software is a fast
implementation of random forests for high dimensional data. Ensembles of
classification, regression and survival trees are supported. We describe the
implementation, provide examples, validate the package with a reference
implementation, and compare runtime and memory usage with other
implementations. The new software proves to scale best with the number of
features, samples, trees, and features tried for splitting. Finally, we show
that ranger is the fastest and most memory efficient implementation of random
forests to analyze data on the scale of a genome-wide association study
Technical Debt Prioritization: State of the Art. A Systematic Literature Review
Background. Software companies need to manage and refactor Technical Debt
issues. Therefore, it is necessary to understand if and when refactoring
Technical Debt should be prioritized with respect to developing features or
fixing bugs. Objective. The goal of this study is to investigate the existing
body of knowledge in software engineering to understand what Technical Debt
prioritization approaches have been proposed in research and industry. Method.
We conducted a Systematic Literature Review among 384 unique papers published
until 2018, following a consolidated methodology applied in Software
Engineering. We included 38 primary studies. Results. Different approaches have
been proposed for Technical Debt prioritization, all having different goals and
optimizing on different criteria. The proposed measures capture only a small
part of the plethora of factors used to prioritize Technical Debt qualitatively
in practice. We report an impact map of such factors. However, there is a lack
of empirical and validated set of tools. Conclusion. We observed that technical
Debt prioritization research is preliminary and there is no consensus on what
are the important factors and how to measure them. Consequently, we cannot
consider current research conclusive and in this paper, we outline different
directions for necessary future investigations
Effect of jumbo squid (Dosidicus gigas) skin extract on the microbial activity in chilled mackerel (Scomber scombrus)
6 páginas, 4 tablas, 2 figurasDuring the industrial processing of jumbo squid (Dosidicus gigas), large amounts of by-products containing biological active compounds are generated. In this study, aqueous solutions including acetic acid-ethanol extracts of jumbo squid skin (JSS) were tested at three different concentrations as icing media. The effects of the JSS extracts on the quality evolution of chilled mackerel (Scomber scombrus) were monitored. A significant inhibition (p < 0.05) of microbial activity was determined in the fish batch corresponding to the icing condition including the highest JSS concentration. Additionally, fish specimens corresponding to batches including any of the JSS concentrations tested showed lower (p < 0.05) proteolytic counts and pH values than control mackerel. Sensory analysis revealed a marked shelf life extension in chilled mackerel stored in ice including the highest JSS concentration; specimens from such batch were found to be still acceptable after 13 days of storage, while all other mackerel batches were rejectable. The marked microbial activity inhibition observed could be explained on the basis of the presence in ice of lipophilic compounds obtained by acetic acid-ethanol extraction of JSSThis work was supported by the CONACYT-Mexico grant 154046 and the Consejo Superior de Investigaciones CientÃficas (CSIC) through Research Project PIE 201370E001Peer reviewe
Transdermal evaluation of caffeine in different formulations and excipients
Background: The stratum corneum(SC) forms adifficultphysical barrier fordrugs to pass through the skin. Several strategieswere developed to overcome this barrier.Optimization of topical drug formulations by selected excipients may facilitate the penetration of drugs through the SC into the viable skin cells and ultimately into the systemic circulation.
Methods: Here, both the influence of two formulations (a classic carbomer-based gel and a novel Pluronic® lecithin organo gel (PLO gel)) and selected excipients (ethanol, propylene glycol, diethylene glycol monoethyl ether, isopropyl myristate (IPM), and water) with or without the penetration enhancer miconazole nitrate on the transdermal penetration characteristics of caffeine were determined using an in vitro Franz diffusion cell setup.
Results: Higher fluxes were observed for the carbomer-based gel compared to the PLO gel. Among the commonly used excipients, IPM showed the best penetration enhancing properties, while the presence of the penetration enhancer miconazole nitrate did not significantly alter the apparent skin permeation characteristics for caffeine.
Conclusion: The high ethanol percentage in the carbomer-based gel could explain the results as supported by our excipient data.Moreover, IPMcould play a beneficial role in topical formulations as this excipient was responsible for a significant increase in the amount of caffeine penetrated through the skin. No overall statistical significant effect of the presence of miconazole nitrate as a penetration enhancer was observed
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