438 research outputs found

    Jacobi-like algorithms for the indefinite generalized Hermitian eigenvalue problem

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    We discuss structure-preserving Jacobi-like algorithms for the solution of the indefinite generalized Hermitian eigenvalue problem. We discuss a method based on the solution of Hermitian 4-by-4 subproblems which generalizes the Jacobi-like method of Bunse-Gerstner/Faßbender for Hamiltonian matrices. Furthermore, we discuss structure-preserving Jacobi-like methods based on the solution of non-Hermitian 2-by-2 subproblems. For these methods a local convergence proof is given. Numerical test results for the comparison of the proposed methods are presented

    Generalized Householder Transformations for the Complex Symmetric Eigenvalue Problem

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    We present an intuitive and scalable algorithm for the diagonalization of complex symmetric matrices, which arise from the projection of pseudo--Hermitian and complex scaled Hamiltonians onto a suitable basis set of "trial" states. The algorithm diagonalizes complex and symmetric (non--Hermitian) matrices and is easily implemented in modern computer languages. It is based on generalized Householder transformations and relies on iterative similarity transformations T -> T' = Q^T T Q, where Q is a complex and orthogonal, but not unitary, matrix, i.e, Q^T equals Q^(-1) but Q^+ is different from Q^(-1). We present numerical reference data to support the scalability of the algorithm. We construct the generalized Householder transformations from the notion that the conserved scalar product of eigenstates Psi_n and Psi_m of a pseudo-Hermitian quantum mechanical Hamiltonian can be reformulated in terms of the generalized indefinite inner product [integral of the product Psi_n(x,t) Psi_m(x,t) over dx], where the integrand is locally defined, and complex conjugation is avoided. A few example calculations are described which illustrate the physical origin of the ideas used in the construction of the algorithm.Comment: 14 pages; RevTeX; font mismatch in Eqs. (3) and (15) is eliminate

    Preconditioned Locally Harmonic Residual Method for Computing Interior Eigenpairs of Certain Classes of Hermitian Matrices

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    We propose a Preconditioned Locally Harmonic Residual (PLHR) method for computing several interior eigenpairs of a generalized Hermitian eigenvalue problem, without traditional spectral transformations, matrix factorizations, or inversions. PLHR is based on a short-term recurrence, easily extended to a block form, computing eigenpairs simultaneously. PLHR can take advantage of Hermitian positive definite preconditioning, e.g., based on an approximate inverse of an absolute value of a shifted matrix, introduced in [SISC, 35 (2013), pp. A696-A718]. Our numerical experiments demonstrate that PLHR is efficient and robust for certain classes of large-scale interior eigenvalue problems, involving Laplacian and Hamiltonian operators, especially if memory requirements are tight

    Accurate computation of singular values and eigenvalues of symmetric matrices

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    We give the review of recent results in relative perturbation theory for eigenvalue and singular value problems and highly accurate algorithms which compute eigenvalues and singular values to the highest possible relative accuracy

    A parallel implementation of Davidson methods for large-scale eigenvalue problems in SLEPc

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    In the context of large-scale eigenvalue problems, methods of Davidson type such as Jacobi-Davidson can be competitive with respect to other types of algorithms, especially in some particularly difficult situations such as computing interior eigenvalues or when matrix factorization is prohibitive or highly inefficient. However, these types of methods are not generally available in the form of high-quality parallel implementations, especially for the case of non-Hermitian eigenproblems. We present our implementation of various Davidson-type methods in SLEPc, the Scalable Library for Eigenvalue Problem Computations. The solvers incorporate many algorithmic variants for subspace expansion and extraction, and cover a wide range of eigenproblems including standard and generalized, Hermitian and non-Hermitian, with either real or complex arithmetic. We provide performance results on a large battery of test problems.This work was supported by the Spanish Ministerio de Ciencia e Innovacion under project TIN2009-07519. Author's addresses: E. Romero, Institut I3M, Universitat Politecnica de Valencia, Cami de Vera s/n, 46022 Valencia, Spain), and J. E. Roman, Departament de Sistemes Informatics i Computacio, Universitat Politecnica de Valencia, Cami de Vera s/n, 46022 Valencia, Spain; email: [email protected] Alcalde, E.; Román Moltó, JE. (2014). A parallel implementation of Davidson methods for large-scale eigenvalue problems in SLEPc. ACM Transactions on Mathematical Software. 40(2):13:01-13:29. https://doi.org/10.1145/2543696S13:0113:29402P. Arbenz, M. Becka, R. Geus, U. Hetmaniuk, and T. Mengotti. 2006. On a parallel multilevel preconditioned Maxwell eigensolver. Parallel Comput. 32, 2, 157--165.Z. Bai, J. Demmel, J. Dongarra, A. Ruhe, and H. van der Vorst, Eds. 2000. Templates for the Solution of Algebraic Eigenvalue Problems: A Practical Guide. SIAM, Philadelphia, PA.C. G. Baker, U. L. Hetmaniuk, R. B. Lehoucq, and H. K. Thornquist. 2009. Anasazi software for the numerical solution of large-scale eigenvalue problems. ACM Trans. Math. Softw. 36, 3, 13:1--13:23.S. Balay, J. Brown, K. Buschelman, V. Eijkhout, W. Gropp, D. Kaushik, M. Knepley, L. C. McInnes, B. Smith, and H. Zhang. 2011. PETSc users manual. Tech. Rep. ANL-95/11-Revision 3.2, Argonne National Laboratory.S. Balay, W. D. Gropp, L. C. McInnes, and B. F. Smith. 1997. Efficient management of parallelism in object oriented numerical software libraries. In Modern Software Tools in Scientific Computing, E. Arge, A. M. Bruaset, and H. P. Langtangen, Eds., Birkhaüser, 163--202.M. A. Brebner and J. Grad. 1982. Eigenvalues of Ax =λ Bx for real symmetric matrices A and B computed by reduction to a pseudosymmetric form and the HR process. Linear Algebra Appl. 43, 99--118.C. Campos, J. E. Roman, E. Romero, and A. Tomas. 2011. SLEPc users manual. Tech. Rep. DSICII/24/02 - Revision 3.2, D. Sistemes Informàtics i Computació, Universitat Politècnica de València. http://www.grycap.upv.es/slepc.T. Dannert and F. Jenko. 2005. Gyrokinetic simulation of collisionless trapped-electronmode turbulence. Phys. Plasmas 12, 7, 072309.E. R. Davidson. 1975. The iterative calculation of a few of the lowest eigenvalues and corresponding eigenvectors of large real-symmetric matrices. J. Comput. Phys. 17, 1, 87--94.T. A. Davis and Y. Hu. 2011. The University of Florida Sparse Matrix Collection. ACM Trans. Math. Softw. 38, 1, 1:1--1:25.H. C. Elman, A. Ramage, and D. J. Silvester. 2007. Algorithm 866: IFISS, a Matlab toolbox for modelling incompressible flow. ACM Trans. Math. Softw. 33, 2. Article 14.T. Ericsson and A. Ruhe. 1980. The spectral transformation Lanczos method for the numerical solution of large sparse generalized symmetric eigenvalue problems. Math. Comp. 35, 152, 1251--1268.M. Ferronato, C. Janna, and G. Pini. 2012. Efficient parallel solution to large-size sparse eigenproblems with block FSAI preconditioning. Numer. Linear Algebra Appl. 19, 5, 797--815.D. R. Fokkema, G. L. G. Sleijpen, and H. A. van der Vorst. 1998. Jacobi--Davidson style QR and QZ algorithms for the reduction of matrix pencils. SIAM J. Sci. Comput. 20, 1, 94--125.M. A. Freitag and A. Spence. 2007. Convergence theory for inexact inverse iteration applied to the generalised nonsymmetric eigenproblem. Electron. Trans. Numer. Anal. 28, 40--64.M. Genseberger. 2010. Improving the parallel performance of a domain decomposition preconditioning technique in the Jacobi-Davidson method for large scale eigenvalue problems. App. Numer. Math. 60, 11, 1083--1099.V. Hernandez, J. E. Roman, and A. Tomas. 2007. Parallel Arnoldi eigensolvers with enhanced scalability via global communications rearrangement. Parallel Comput. 33, 7--8, 521--540.V. Hernandez, J. E. Roman, and V. Vidal. 2005. SLEPc: A scalable and flexible toolkit for the solution of eigenvalue problems. ACM Trans. Math. Softw. 31, 3, 351--362.V. Heuveline, B. Philippe, and M. Sadkane. 1997. Parallel computation of spectral portrait of large matrices by Davidson type methods. Numer. Algor. 16, 1, 55--75.M. E. Hochstenbach. 2005a. Generalizations of harmonic and refined Rayleigh-Ritz. Electron. Trans. Numer. Anal. 20, 235--252.M. E. Hochstenbach. 2005b. Variations on harmonic Rayleigh--Ritz for standard and generalized eigenproblems. Preprint, Department of Mathematics, Case Western Reserve University.M. E. Hochstenbach and Y. Notay. 2006. The Jacobi--Davidson method. GAMM Mitt. 29, 2, 368--382.F.-N. Hwang, Z.-H. Wei, T.-M. Huang, and W. Wang. 2010. A parallel additive Schwarz preconditioned Jacobi-Davidson algorithm for polynomial eigenvalue problems in quantum dot simulation. J. Comput. Phys. 229, 8, 2932--2947.A. V. Knyazev. 2001. Toward the optimal preconditioned eigensolver: Locally optimal block preconditioned conjugate gradient method. SIAM J. Sci. Comput. 23, 2, 517--541.A. V. Knyazev, M. E. Argentati, I. Lashuk, and E. E. Ovtchinnikov. 2007. Block Locally Optimal Preconditioned Eigenvalue Xolvers (BLOPEX) in HYPRE and PETSc. SIAM J. Sci. Comput. 29, 5, 2224--2239.J. Kopal, M. Rozložník, M. Tuma, and A. Smoktunowicz. 2012. Rounding error analysis of orthogonalization with a non-standard inner product. Numer. Math. 52, 4, 1035--1058.D. Kressner. 2006. Block algorithms for reordering standard and generalized Schur forms. ACM Trans. Math. Softw. 32, 4, 521--532.R. B. Lehoucq, D. C. Sorensen, and C. Yang. 1998. ARPACK Users' Guide, Solution of Large-Scale Eigenvalue Problems by Implicitly Restarted Arnoldi Methods. SIAM, Philadelphia, PA.Z. Li, Y. Saad, and M. Sosonkina. 2003. pARMS: a parallel version of the algebraic recursive multilevel solver. Numer. Linear Algebra Appl. 10, 5--6, 485--509.J. R. McCombs and A. Stathopoulos. 2006. Iterative validation of eigensolvers: a scheme for improving the reliability of Hermitian eigenvalue solvers. SIAM J. Sci. Comput. 28, 6, 2337--2358.F. Merz, C. Kowitz, E. Romero, J. E. Roman, and F. Jenko. 2012. Multi-dimensional gyrokinetic parameter studies based on eigenvalues computations. Comput. Phys. Commun. 183, 4, 922--930.R. B. Morgan. 1990. Davidson's method and preconditioning for generalized eigenvalue problems. J. Comput. Phys. 89, 241--245.R. B. Morgan. 1991. Computing interior eigenvalues of large matrices. Linear Algebra Appl. 154--156, 289--309.R. B. Morgan and D. S. Scott. 1986. Generalizations of Davidson's method for computing eigenvalues of sparse symmetric matrices. SIAM J. Sci. Statist. Comput. 7, 3, 817--825.R. Natarajan and D. Vanderbilt. 1989. A new iterative scheme for obtaining eigenvectors of large, real-symmetric matrices. J. Comput. Phys. 82, 1, 218--228.M. Nool and A. van der Ploeg. 2000. A parallel Jacobi--Davidson-type method for solving large generalized eigenvalue problems in magnetohydrodynamics. SIAM J. Sci. Comput. 22, 1, 95--112.J. Olsen, P. Jørgensen, and J. Simons. 1990. Passing the one-billion limit in full configuration-interaction (FCI) calculations. Chem. Phys. Lett. 169, 6, 463--472.C. C. Paige, B. N. Parlett, and H. A. van der Vorst. 1995. Approximate solutions and eigenvalue bounds from Krylov subspaces. Numer. Linear Algebra Appl. 2, 2, 115--133.E. Romero and J. E. Roman. 2011. Computing subdominant unstable modes of turbulent plasma with a parallel Jacobi--Davidson eigensolver. Concur. Comput.: Pract. Exp. 23, 17, 2179--2191.Y. Saad. 1993. A flexible inner-outer preconditioned GMRES algorithm. SIAM J. Sci. Comput. 14, 2, 461--469.G. L. G. Sleijpen, A. G. L. Booten, D. R. Fokkema, and H. A. van der Vorst. 1996. Jacobi-Davidson type methods for generalized eigenproblems and polynomial eigenproblems. BIT 36, 3, 595--633.G. L. G. Sleijpen and H. A. van der Vorst. 1996. A Jacobi--Davidson iteration method for linear eigenvalue problems. SIAM J. Matrix Anal. Appl. 17, 2, 401--425.G. L. G. Sleijpen and H. A. van der Vorst. 2000. A Jacobi--Davidson iteration method for linear eigenvalue problems. SIAM Rev. 42, 2, 267--293.G. L. G. Sleijpen, H. A. van der Vorst, and E. Meijerink. 1998. Efficient expansion of subspaces in the Jacobi--Davidson method for standard and generalized eigenproblems. Electron. Trans. Numer. Anal. 7, 75--89.A. Stathopoulos. 2007. Nearly optimal preconditioned methods for Hermitian eigenproblems under limited memory. Part I: Seeking one eigenvalue. SIAM J. Sci. Comput. 29, 2, 481--514.A. Stathopoulos and J. R. McCombs. 2007. Nearly optimal preconditioned methods for Hermitian eigenproblems under limited memory. Part II: Seeking many eigenvalues. SIAM J. Sci. Comput. 29, 5, 2162--2188.A. Stathopoulos and J. R. McCombs. 2010. PRIMME: PReconditioned Iterative MultiMethod Eigensolver: Methods and software description. ACM Trans. Math. Softw. 37, 2, 21:1--21:30.A. Stathopoulos and Y. Saad. 1998. Restarting techniques for the (Jacobi-)Davidson symmetric eigenvalue methods. Electron. Trans. Numer. Anal. 7, 163--181.A. Stathopoulos, Y. Saad, and C. F. Fischer. 1995. Robust preconditioning of large, sparse, symmetric eigenvalue problems. J. Comput. Appl. Math. 64, 3, 197--215.A. Stathopoulos, Y. Saad, and K. Wu. 1998. Dynamic thick restarting of the Davidson, and the implicitly restarted Arnoldi methods. SIAM J. Sci. Comput. 19, 1, 227--245.G. W. Stewart. 2001. Matrix Algorithms. Volume II: Eigensystems. SIAM, Philadelphia, PA.H. A. van der Vorst. 2002. Computational methods for large eigenvalue problems. In Handbook of Numerical Analysis, P. G. Ciarlet and J. L. Lions, Eds., Vol. VIII, Elsevier, 3--179.H. A. van der Vorst. 2004. Modern methods for the iterative computation of eigenpairs of matrices of high dimension. Z. Angew. Math. Mech. 84, 7, 444--451.T. van Noorden and J. Rommes 2007. Computing a partial generalized real Schur form using the Jacobi--Davidson method. Numer. Linear Algebra Appl. 14, 3, 197--215.T. D. Young, E. Romero, and J. E. Roman. 2013. Parallel finite element density functional computations exploiting grid refinement and subspace recycling. Comput. Phys. Commun. 184, 1, 66--72

    Structure Preserving Parallel Algorithms for Solving the Bethe-Salpeter Eigenvalue Problem

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    The Bethe-Salpeter eigenvalue problem is a dense structured eigenvalue problem arising from discretized Bethe-Salpeter equation in the context of computing exciton energies and states. A computational challenge is that at least half of the eigenvalues and the associated eigenvectors are desired in practice. We establish the equivalence between Bethe-Salpeter eigenvalue problems and real Hamiltonian eigenvalue problems. Based on theoretical analysis, structure preserving algorithms for a class of Bethe-Salpeter eigenvalue problems are proposed. We also show that for this class of problems all eigenvalues obtained from the Tamm-Dancoff approximation are overestimated. In order to solve large scale problems of practical interest, we discuss parallel implementations of our algorithms targeting distributed memory systems. Several numerical examples are presented to demonstrate the efficiency and accuracy of our algorithms

    The Anderson model of localization: a challenge for modern eigenvalue methods

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    We present a comparative study of the application of modern eigenvalue algorithms to an eigenvalue problem arising in quantum physics, namely, the computation of a few interior eigenvalues and their associated eigenvectors for the large, sparse, real, symmetric, and indefinite matrices of the Anderson model of localization. We compare the Lanczos algorithm in the 1987 implementation of Cullum and Willoughby with the implicitly restarted Arnoldi method coupled with polynomial and several shift-and-invert convergence accelerators as well as with a sparse hybrid tridiagonalization method. We demonstrate that for our problem the Lanczos implementation is faster and more memory efficient than the other approaches. This seemingly innocuous problem presents a major challenge for all modern eigenvalue algorithms.Comment: 16 LaTeX pages with 3 figures include
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