Entity-centric knowledge discovery for idiosyncratic domains

Technical and scientific knowledge is produced at an ever-accelerating pace, leading to increasing issues when trying to automatically organize or process it, e.g., when searching for relevant prior work. Knowledge can today be produced both in unstructured (plain text) and structured (metadata or linked data) forms. However, unstructured content is still themost dominant formused to represent scientific knowledge. In order to facilitate the extraction and discovery of relevant content, new automated and scalable methods for processing, structuring and organizing scientific knowledge are called for. In this context, a number of applications are emerging, ranging fromNamed Entity Recognition (NER) and Entity Linking tools for scientific papers to specific platforms leveraging information extraction techniques to organize scientific knowledge. In this thesis, we tackle the tasks of Entity Recognition, Disambiguation and Linking in idiosyncratic domains with an emphasis on scientific literature. Furthermore, we study the related task of co-reference resolution with a specific focus on named entities. We start by exploring Named Entity Recognition, a task that aims to identify the boundaries of named entities in textual contents. We propose a newmethod to generate candidate named entities based on n-gram collocation statistics and design several entity recognition features to further classify them. In addition, we show how the use of external knowledge bases (either domain-specific like DBLP or generic like DBPedia) can be leveraged to improve the effectiveness of NER for idiosyncratic domains. Subsequently, we move to Entity Disambiguation, which is typically performed after entity recognition in order to link an entity to a knowledge base. We propose novel semi-supervised methods for word disambiguation leveraging the structure of a community-based ontology of scientific concepts. Our approach exploits the graph structure that connects different terms and their definitions to automatically identify the correct sense that was originally picked by the authors of a scientific publication. We then turn to co-reference resolution, a task aiming at identifying entities that appear using various forms throughout the text. We propose an approach to type entities leveraging an inverted index built on top of a knowledge base, and to subsequently re-assign entities based on the semantic relatedness of the introduced types. Finally, we describe an application which goal is to help researchers discover and manage scientific publications. We focus on the problem of selecting relevant tags to organize collections of research papers in that context. We experimentally demonstrate that the use of a community-authored ontology together with information about the position of the concepts in the documents allows to significantly increase the precision of tag selection over standard methods

Entities with quantities : extraction, search, and ranking

Quantities are more than numeric values. They denote measures of the world’s entities such as heights of buildings, running times of athletes, energy efficiency of car models or energy production of power plants, all expressed in numbers with associated units. Entity-centric search and question answering (QA) are well supported by modern search engines. However, they do not work well when the queries involve quantity filters, such as searching for athletes who ran 200m under 20 seconds or companies with quarterly revenue above $2 Billion. State-of-the-art systems fail to understand the quantities, including the condition (less than, above, etc.), the unit of interest (seconds, dollar, etc.), and the context of the quantity (200m race, quarterly revenue, etc.). QA systems based on structured knowledge bases (KBs) also fail as quantities are poorly covered by state-of-the-art KBs. In this dissertation, we developed new methods to advance the state-of-the-art on quantity knowledge extraction and search.Zahlen sind mehr als nur numerische Werte. Sie beschreiben Maße von Entitäten wie die Höhe von Gebäuden, die Laufzeit von Sportlern, die Energieeffizienz von Automodellen oder die Energieerzeugung von Kraftwerken - jeweils ausgedrückt durch Zahlen mit zugehörigen Einheiten. Entitätszentriete Anfragen und direktes Question-Answering werden von Suchmaschinen häufig gut unterstützt. Sie funktionieren jedoch nicht gut, wenn die Fragen Zahlenfilter beinhalten, wie z. B. die Suche nach Sportlern, die 200m unter 20 Sekunden gelaufen sind, oder nach Unternehmen mit einem Quartalsumsatz von über 2 Milliarden US-Dollar. Selbst moderne Systeme schaffen es nicht, Quantitäten, einschließlich der genannten Bedingungen (weniger als, über, etc.), der Maßeinheiten (Sekunden, Dollar, etc.) und des Kontexts (200-Meter-Rennen, Quartalsumsatz usw.), zu verstehen. Auch QA-Systeme, die auf strukturierten Wissensbanken (“Knowledge Bases”, KBs) aufgebaut sind, versagen, da quantitative Eigenschaften von modernen KBs kaum erfasst werden. In dieser Dissertation werden neue Methoden entwickelt, um den Stand der Technik zur Wissensextraktion und -suche von Quantitäten voranzutreiben. Unsere Hauptbeiträge sind die folgenden: • Zunächst präsentieren wir Qsearch [Ho et al., 2019, Ho et al., 2020] – ein System, das mit erweiterten Fragen mit Quantitätsfiltern umgehen kann, indem es Hinweise verwendet, die sowohl in der Frage als auch in den Textquellen vorhanden sind. Qsearch umfasst zwei Hauptbeiträge. Der erste Beitrag ist ein tiefes neuronales Netzwerkmodell, das für die Extraktion quantitätszentrierter Tupel aus Textquellen entwickelt wurde. Der zweite Beitrag ist ein neuartiges Query-Matching-Modell zum Finden und zur Reihung passender Tupel. • Zweitens, um beim Vorgang heterogene Tabellen einzubinden, stellen wir QuTE [Ho et al., 2021a, Ho et al., 2021b] vor – ein System zum Extrahieren von Quantitätsinformationen aus Webquellen, insbesondere Ad-hoc Webtabellen in HTML-Seiten. Der Beitrag von QuTE umfasst eine Methode zur Verknüpfung von Quantitäts- und Entitätsspalten, für die externe Textquellen genutzt werden. Zur Beantwortung von Fragen kontextualisieren wir die extrahierten Entitäts-Quantitäts-Paare mit informativen Hinweisen aus der Tabelle und stellen eine neue Methode zur Konsolidierung und verbesserteer Reihung von Antwortkandidaten durch Inter-Fakten-Konsistenz vor. • Drittens stellen wir QL [Ho et al., 2022] vor – eine Recall-orientierte Methode zur Anreicherung von Knowledge Bases (KBs) mit quantitativen Fakten. Moderne KBs wie Wikidata oder YAGO decken viele Entitäten und ihre relevanten Informationen ab, übersehen aber oft wichtige quantitative Eigenschaften. QL ist frage-gesteuert und basiert auf iterativem Lernen mit zwei Hauptbeiträgen, um die KB-Abdeckung zu verbessern. Der erste Beitrag ist eine Methode zur Expansion von Fragen, um einen größeren Pool an Faktenkandidaten zu erfassen. Der zweite Beitrag ist eine Technik zur Selbstkonsistenz durch Berücksichtigung der Werteverteilungen von Quantitäten

A constraint-based hypergraph partitioning approach to coreference resolution

The objectives of this thesis are focused on research in machine learning for coreference resolution. Coreference resolution is a natural language processing task that consists of determining the expressions in a discourse that mention or refer to the same entity. The main contributions of this thesis are (i) a new approach to coreference resolution based on constraint satisfaction, using a hypergraph to represent the problem and solving it by relaxation labeling; and (ii) research towards improving coreference resolution performance using world knowledge extracted from Wikipedia. The developed approach is able to use entity-mention classi cation model with more expressiveness than the pair-based ones, and overcome the weaknesses of previous approaches in the state of the art such as linking contradictions, classi cations without context and lack of information evaluating pairs. Furthermore, the approach allows the incorporation of new information by adding constraints, and a research has been done in order to use world knowledge to improve performances. RelaxCor, the implementation of the approach, achieved results in the state of the art, and participated in international competitions: SemEval-2010 and CoNLL-2011. RelaxCor achieved second position in CoNLL-2011.La resolució de correferències és una tasca de processament del llenguatge natural que consisteix en determinar les expressions d'un discurs que es refereixen a la mateixa entitat del mon real. La tasca té un efecte directe en la minería de textos així com en moltes tasques de llenguatge natural que requereixin interpretació del discurs com resumidors, responedors de preguntes o traducció automàtica. Resoldre les correferències és essencial si es vol poder “entendre” un text o un discurs. Els objectius d'aquesta tesi es centren en la recerca en resolució de correferències amb aprenentatge automàtic. Concretament, els objectius de la recerca es centren en els següents camps: + Models de classificació: Els models de classificació més comuns a l'estat de l'art estan basats en la classificació independent de parelles de mencions. Més recentment han aparegut models que classifiquen grups de mencions. Un dels objectius de la tesi és incorporar el model entity-mention a l'aproximació desenvolupada. + Representació del problema: Encara no hi ha una representació definitiva del problema. En aquesta tesi es presenta una representació en hypergraf. + Algorismes de resolució. Depenent de la representació del problema i del model de classificació, els algorismes de ressolució poden ser molt diversos. Un dels objectius d'aquesta tesi és trobar un algorisme de resolució capaç d'utilitzar els models de classificació en la representació d'hypergraf. + Representació del coneixement: Per poder administrar coneixement de diverses fonts, cal una representació simbòlica i expressiva d'aquest coneixement. En aquesta tesi es proposa l'ús de restriccions. + Incorporació de coneixement del mon: Algunes correferències no es poden resoldre només amb informació lingüística. Sovint cal sentit comú i coneixement del mon per poder resoldre coreferències. En aquesta tesi es proposa un mètode per extreure coneixement del mon de Wikipedia i incorporar-lo al sistem de resolució. Les contribucions principals d'aquesta tesi son (i) una nova aproximació al problema de resolució de correferències basada en satisfacció de restriccions, fent servir un hypergraf per representar el problema, i resolent-ho amb l'algorisme relaxation labeling; i (ii) una recerca per millorar els resultats afegint informació del mon extreta de la Wikipedia. L'aproximació presentada pot fer servir els models mention-pair i entity-mention de forma combinada evitant així els problemes que es troben moltes altres aproximacions de l'estat de l'art com per exemple: contradiccions de classificacions independents, falta de context i falta d'informació. A més a més, l'aproximació presentada permet incorporar informació afegint restriccions i s'ha fet recerca per aconseguir afegir informació del mon que millori els resultats. RelaxCor, el sistema que ha estat implementat durant la tesi per experimentar amb l'aproximació proposada, ha aconseguit uns resultats comparables als millors que hi ha a l'estat de l'art. S'ha participat a les competicions internacionals SemEval-2010 i CoNLL-2011. RelaxCor va obtenir la segona posició al CoNLL-2010

Enhancing Biomedical Scientific Reviews Summarization with Graph-based Factual Evidence Extracted from Papers

Combining structured knowledge and neural language models to tackle natural language processing tasks is a recent research trend that catalyzes community attention. This integration holds a lot of potential in document summarization, especially in the biomedical domain, where the jargon and the complex facts make the overarching information truly hard to interpret. In this context, graph construction via semantic parsing plays a crucial role in unambiguously capturing the most relevant parts of a document. However, current works are limited to extracting open-domain triples, failing to model real-world n-ary and nested biomedical interactions accurately. To alleviate this issue, we present EASumm, the first framework for biomedical abstractive summarization enhanced by event graph extraction (i.e., graphical representations of medical evidence learned from scientific text), relying on dual text-graph encoders. Extensive evaluations on the CDSR dataset corroborate the importance of explicit event structures, with better or comparable performance than previous state-of-the-art systems. Finally, we offer some hints to guide future research in the field

Mining semantics for culturomics: towards a knowledge-based approach

The massive amounts of text data made available through the Google Books digitization project have inspired a new field of big-data textual research. Named culturomics, this field has attracted the attention of a growing number of scholars over recent years. However, initial studies based on these data have been criticized for not referring to relevant work in linguistics and language technology. This paper provides some ideas, thoughts and first steps towards a new culturomics initiative, based this time on Swedish data, which pursues a more knowledge-based approach than previous work in this emerging field. The amount of new Swedish text produced daily and older texts being digitized in cultural heritage projects grows at an accelerating rate. These volumes of text being available in digital form have grown far beyond the capacity of human readers, leaving automated semantic processing of the texts as the only realistic option for accessing and using the information contained in them. The aim of our recently initiated research program is to advance the state of the art in language technology resources and methods for semantic processing of Big Swedish text and focus on the theoretical and methodological advancement of the state of the art in extracting and correlating information from large volumes of Swedish text using a combination of knowledge-based and statistical methods

Automatic inference of causal reasoning chains from student essays

While there has been an increasing focus on higher-level thinking skills arising from the Common Core Standards, many high-school and middle-school students struggle to combine and integrate information from multiple sources when writing essays. Writing is an important learning skill, and there is increasing evidence that writing about a topic develops a deeper understanding in the student. However, grading essays is time consuming for teachers, resulting in an increasing focus on shallower forms of assessment that are easier to automate, such as multiple-choice tests. Existing essay grading software has attempted to ease this burden but relies on shallow lexico-syntactic features and is unable to understand the structure or validity of a student’s arguments or explanations. Without the ability to understand a student’s reasoning processes, it is impossible to write automated formative assessment systems to assist students with improving their thinking skills through essay writing. In order to understand the arguments put forth in an explanatory essay in the science domain, we need a method of representing the causal structure of a piece of explanatory text. Psychologists use a representation called a causal model to represent a student\u27s understanding of an explanatory text. This consists of a number of core concepts, and a set of causal relations linking them into one or more causal chains, forming a causal model. In this thesis I present a novel system for automatically constructing causal models from student scientific essays using Natural Language Processing (NLP) techniques. The problem was decomposed into 4 sub-problems - assigning essay concepts to words, detecting causal-relations between these concepts, resolving coreferences within each essay, and using the structure of the whole essay to reconstruct a causal model. Solutions to each of these sub-problems build upon the predictions from the solutions to earlier problems, forming a sequential pipeline of models. Designing a system in this way allows later models to correct for false positive predictions from downstream models. However, this also has the disadvantage that errors made in earlier models can propagate through the system, negatively impacting the upstream models, and limiting their accuracy. Producing robust solutions for the initial 2 sub problems, detecting concepts, and parsing causal relations between them, was critical in building a robust system. A number of sequence labeling models were trained to classify the concepts associated with each word, with the most effective approach being a bidirectional recurrent neural network (RNN), a deep learning model commonly applied to word labeling problems. This is because the RNN used pre-trained word embeddings to better generalize to rarer words, and was able to use information from both ends of each sentence to infer a word\u27s concept. The concepts predicted by this model were then used to develop causal relation parsing models for detecting causal connections between these concepts. A shift-reduce dependency parsing model was trained using the SEARN algorithm and out-performed a number of other approaches by better utilizing the structure of the problem and directly optimizing the error metric used. Two pre-trained coreference resolution systems were used to resolve coreferences within the essays. However a word tagging model trained to predict anaphors combined with a heuristic for determining the antecedent out-performed these two systems. Finally, a model was developed for parsing a causal model from an entire essay, utilizing the solutions to the three previous problems. A beam search algorithm was used to produce multiple parses for each sentence, which in turn were combined to generate multiple candidate causal models for each student essay. A reranking algorithm was then used to select the optimal causal model from all of the generated candidates. An important contribution of this work is that it represents a system for parsing a complete causal model of a scientific essay from a student\u27s written answer. Existing systems have been developed to parse individual causal relations, but no existing system attempts to parse a sequence of linked causal relations forming a causal model from an explanatory scientific essay. It is hoped that this work can lead to the development of more robust essay grading software and formative assessment tools, and can be extended to build solutions for extracting causality from text in other domains. In addition, I also present 2 novel approaches for optimizing the micro-F1 score within the design of two of the algorithms studied: the dependency parser and the reranking algorithm. The dependency parser uses a custom cost function to estimate the impact of parsing mistakes on the overall micro-F1 score, while the reranking algorithm allows the micro-F1 score to be optimized by tuning the beam search parameter to balance recall and precision

Intelligent Information Access to Linked Data - Weaving the Cultural Heritage Web

The subject of the dissertation is an information alignment experiment of two cultural heritage information systems (ALAP): The Perseus Digital Library and Arachne. In modern societies, information integration is gaining importance for many tasks such as business decision making or even catastrophe management. It is beyond doubt that the information available in digital form can offer users new ways of interaction. Also, in the humanities and cultural heritage communities, more and more information is being published online. But in many situations the way that information has been made publicly available is disruptive to the research process due to its heterogeneity and distribution. Therefore integrated information will be a key factor to pursue successful research, and the need for information alignment is widely recognized. ALAP is an attempt to integrate information from Perseus and Arachne, not only on a schema level, but to also perform entity resolution. To that end, technical peculiarities and philosophical implications of the concepts of identity and co-reference are discussed. Multiple approaches to information integration and entity resolution are discussed and evaluated. The methodology that is used to implement ALAP is mainly rooted in the fields of information retrieval and knowledge discovery. First, an exploratory analysis was performed on both information systems to get a first impression of the data. After that, (semi-)structured information from both systems was extracted and normalized. Then, a clustering algorithm was used to reduce the number of needed entity comparisons. Finally, a thorough matching was performed on the different clusters. ALAP helped with identifying challenges and highlighted the opportunities that arise during the attempt to align cultural heritage information systems

Semantics-based automated essay evaluation

Automated essay evaluation (AEE) is a widely used practical solution for replacing time-consuming manual grading of student essays. Automated systems are used in combination with human graders in different high-stake assessments, as well as in classrooms. During the last 50 years, since the beginning of the development of the field, many challenges have arisen in the field, including seeking ways to evaluate the semantic content, providing automated feedback, determining reliability of grades, making the field more "exposed", and others. In this dissertation we address several of these challenges and propose novel solutions for semantic based essay evaluation. Most of the AEE research has been conducted by commercial organizations that protect their investments by releasing proprietary systems where details are not publicly available. We provide comparison (as detailed as possible) of 20 state-of-the-art approaches for automated essay evaluation and we propose a new automated essay evaluation system named SAGE (Semantic Automated Grader for Essays) with all the technological details revealed to the scientific community. Lack of consideration of text semantics is one of the main weaknesses of the existing state-of-the-art systems. We address the evaluation of essay semantics from perspectives of essay coherence and semantic error detection. Coherence describes the flow of information in an essay and allows us to evaluate the connections between the discourse. We propose two groups of coherence attributes: coherence attributes obtained in a highly dimensional semantic space and coherence attributes obtained from a sentence-similarity networks. Furthermore, we propose the Automated Error Detection (AED) system and evaluate the essay semantics from the perspective of essay consistency. The system detects semantic errors using information extraction and logic reasoning and is able to provide semantic feedback for the writer. The proposed system SAGE achieves significantly higher grading accuracy compared with other state-of-the-art automated essay evaluation systems. In the last part of the dissertation we address the question of reliability of grades. Despite the unified grading rules, human graders introduce bias into scores. Consequently, a grading model has to implement a grading logic that may be a mixture of grading logics from various graders. We propose an approach for separating a set of essays into subsets that represent different graders, which uses an explanation methodology and clustering. The results show that learning from the ensemble of separated models significantly improves the average prediction accuracy on artificial and real-world datasets