Exploring Hyperspectral and Very High Spatial Resolution Imagery in Vegetation Characterization

This dissertation describes three contributions in the characterization of vegetation canopies using remote sensing data, with a focus on hyperspectral and very high spatial resolution imagery. The new and innovative methods developed are: 1) integration of contribution theory into a model inversion approach to obtain high accuracy in canopy biophysical parameter estimation; 2) exploration and adoption of tree crown longitudinal profiles to achieve high accuracy in tree species classification; and 3) evaluation of canopy health state for Emerald Ash Borer (EAB) infestation assessment by intelligent combination of multi-sourced data

Forestry and Arboriculture Applications Using High-Resolution Imagery from Unmanned Aerial Vehicles (UAV)

Forests cover over one-third of the planet and provide unmeasurable benefits to the ecosystem. Forest managers have collected and processed countless amounts of data for use in studying, planning, and management of these forests. Data collection has evolved from completely manual operations to the incorporation of technology that has increased the efficiency of data collection and decreased overall costs. Many technological advances have been made that can be incorporated into natural resources disciplines. Laser measuring devices, handheld data collectors and more recently, unmanned aerial vehicles, are just a few items that are playing a major role in the way data is managed and collected. Field hardware has also been aided with new and improved mobile and computer software. Over the course of this study, field technology along with computer advancements have been utilized to aid in forestry and arboricultural applications. Three-dimensional point cloud data that represent tree shape and height were extracted and examined for accuracy. Traditional fieldwork collection (tree height, tree diameter and canopy metrics) was derived from remotely sensed data by using new modeling techniques which will result in time and cost savings. Using high resolution aerial photography, individual tree species are classified to support tree inventory development. Point clouds were used to create digital elevation models (DEM) which can further be used in hydrology analysis, slope, aspect, and hillshades. Digital terrain models (DTM) are in geographic information system (GIS), and along with DEMs, used to create canopy height models (CHM). The results of this study can enhance how the data are utilized and prompt further research and new initiatives that will improve and garner new insight for the use of remotely sensed data in forest management

Crown-level mapping of tree species and health from remote sensing of rural and urban forests

Tree species composition and health are key attributes for rural and urban forest biodiversity, and ecosystem services preservation. Remote sensing has facilitated extraordinary advances in estimating and mapping tree species composition and health. Yet previous sensors and algorithms were largely unable to resolve individual tree crowns and discriminate tree species or health classes at this essential spatial scale due to the low image spectral and spatial resolution. However, current available very high spatial resolution (VHR) remote sensing data can begin to resolve individual tree crowns and measure their spectral and structural qualities with unprecedented precision. Moreover, various machine learning algorithms are now available to apply these new data sources toward the discrimination and the mapping of tree species and health classes. The dissertation includes an introductory chapter, three stand-alone manuscripts, and a concluding chapter, each of which support the overarching theme of mapping tree species composition and health using remote sensing images. The first manuscript, now published in the International Journal of Remote Sensing, confirms the utility of combining VHR multi-temporal satellite data with LiDAR datasets for tree species classification using machine learning classifiers at the crown level in a rural forest the Fernow Experimental Forest, West Virginia. This research also evaluates the contribution of each type of spectral, phenological and structural feature for discriminating four tree species: red oak (Quercus rubra), sugar maple (Acer saccharum), tulip poplar (Liriodendron tulipifera), and black cherry (Prunus serotina). The second manuscript investigates the performance of tree species classification in urban settings with three contributions: 1) 12 very high resolution WorldView-3 images (WV-3), whose image acquisition date covering the growing season from April to November; 2) a large forest inventory providing sufficient calibration/validation datasets in Washington D.C.; 3) object-based tree species classification using the RandomForest machine learning algorithm. This manuscript identifies the incremental losses in classification accuracy caused by iteratively expanding the classification to 19 species and 10 genera. It also identifies the optimum pheno-phases and spectral bands for discriminating trees species in urban settings. Building on these promising results from the second manuscript, the third manuscript detect a signal of statistical difference among individual tree health conditions using WorldView-3 images from June 11th, July 30th and August 30th , 2017 in Washington D.C.. It examines six vegetation indices calculated from WorldView-3 images to describe three health condition levels in good, fair and poor, and discusses the effects of green-down phenology for tree health analysis. Overall, this dissertation research contributes to remote sensing research by combining data from both active and passive sensors to discriminate tree species in rural forest. For the species-rich urban settings, this dissertation illustrates the importance of phenology for tree species classification at crown level using VHR remote sensing images. Finally, this dissertation provides important insights on detecting statistical differences among tree health conditions at individual crown-level in the urban environment using VHR remote sensing images

Mapping Succession in Non-Forest Habitats by Means of Remote Sensing: Is the Data Acquisition Time Critical for Species Discrimination?

The process of secondary succession is one of themost significant threats to non-forest (natural and semi-natural open) Natura 2000 habitats in Poland; shrub and tree encroachment taking place on abandoned, low productive agricultural areas, historically used as pastures or meadows, leads to changes to the composition of species and biodiversity loss, and results in landscape transformations. There is a perceived need to create amethodology for themonitoring of vegetation succession by airborne remote sensing, both from quantitative (area, volume) and qualitative (plant species) perspectives. This is likely to become a very important issue for the effective protection of natural and semi-natural habitats and to advance conservation planning. A key variable to be established when implementing a qualitative approach is the remote sensing data acquisition date, which determines the developmental stage of trees and shrubs forming the succession process. It is essential to choose the optimal date on which the spectral and geometrical characteristics of the species are as different from each other as possible. As part of the research presented here, we compare classifications based on remote sensing data acquired during three different parts of the growing season (spring, summer and autumn) for five study areas. The remote sensing data used include high-resolution hyperspectral imagery and LiDAR (Light Detection and Ranging) data acquired simultaneously from a common aerial platform. Classifications are done using the random forest algorithm, and the set of features to be classified is determined by a recursive feature elimination procedure. The results show that the time of remote sensing data acquisition influences the possibility of differentiating succession species. This was demonstrated by significant differences in the spatial extent of species, which ranged from 33.2% to 56.2% when comparing pairs of maps, and differences in classification accuracies, which when expressed in values of Cohen’s Kappa reached ~0.2. For most of the analysed species, the spring and autumn dates turned out to be slightly more favourable than the summer one. However, the final recommendation for the data acquisition time should take into consideration th

Remote Sensing

This dual conception of remote sensing brought us to the idea of preparing two different books; in addition to the first book which displays recent advances in remote sensing applications, this book is devoted to new techniques for data processing, sensors and platforms. We do not intend this book to cover all aspects of remote sensing techniques and platforms, since it would be an impossible task for a single volume. Instead, we have collected a number of high-quality, original and representative contributions in those areas

URBAN TREE CROWN PROJECTION AREA MAPPING WITH OBJECT BASED IMAGE ANALYSIS FOR URBAN ECOSYSTEM SERVICE INDICATOR DEVELOPMENT

The continuous expansion of built-up areas in the urban environment at the expense of green spaces brings up numerous environmental problems, for which accurate and efficient solutions should be found. The assessment of ecosystem services developed within the field of landscape ecology is playing an ever more important role in environmental sciences and thus may offer suitable answers. Such assessments can be carried out by developing indicators. Accordingly, in the case of urban trees, an accurate quantitative characterization of their services (such as e.g. carbon sequestration, pollutant removal and microclimate regulation) is also needed. The aim of this study is to establish a generally applicable method based on indicator development, using widely available data. In the case of urban green spaces there are several services for which the development of proper indicators and evaluation methods requires a delineation of tree crowns, or at least the crown projection area. Accordingly, in our work, we map the crown projection area of a large and popular urban park of Szeged, Széchenyi square, using object-based image analysis on UltraCamD digital orthophotos. Following a multiresolution segmentation the classification of the resulting objects was carried out, using the eCognition image analysis software. Besides fulfilling the policy objectives related to the evaluation of urban ecosystem services, the produced crown base can also be used in several other types of urban ecological and urban climatological studies (e.g. urban climate modelling, human-comfort assessment). In this paper the first results are presented

Assessing a novel modelling approach with high resolution UAV imagery for monitoring health status in priority riparian forests

ResearchBackground: Black alder (Alnus glutinosa) forests are in severe decline across their area of distribution due to a disease caused by the soil-borne pathogenic Phytophthora alni species complex (class Oomycetes), “alder Phytopththora”. Mapping of the different types of damages caused by the disease is challenging in high density ecosystems in which spectral variability is high due to canopy heterogeneity. Data obtained by unmanned aerial vehicles (UAVs) may be particularly useful for such tasks due to the high resolution, flexibility of acquisition and cost efficiency of this type of data. In this study, A. glutinosa decline was assessed by considering four categories of tree health status in the field: asymptomatic, dead and defoliation above and below a 50% threshold. A combination of multispectral Parrot Sequoia and UAV unmanned aerial vehicles -red green blue (RGB) data were analysed using classical random forest (RF) and a simple and robust three-step logistic modelling approaches to identify the most important forest health indicators while adhering to the principle of parsimony. A total of 34 remote sensing variables were considered, including a set of vegetation indices, texture features from the normalized difference vegetation index (NDVI) and a digital surface model (DSM), topographic and digital aerial photogrammetry-derived structural data from the DSM at crown level. Results: The four categories identified by the RF yielded an overall accuracy of 67%, while aggregation of the legend to three classes (asymptomatic, defoliated, dead) and to two classes (alive, dead) improved the overall accuracy to 72% and 91% respectively. On the other hand, the confusion matrix, computed from the three logistic models by using the leave-out cross-validation method yielded overall accuracies of 75%, 80% and 94% for four-, three- and two-level classifications, respectively. Discussion: The study findings provide forest managers with an alternative robust classification method for the rapid, effective assessment of areas affected and non-affected by the disease, thus enabling them to identify hotspots for conservation and plan control and restoration measures aimed at preserving black alder forestsinfo:eu-repo/semantics/publishedVersio

A Trillion Coral Reef Colors: Deeply Annotated Underwater Hyperspectral Images for Automated Classification and Habitat Mapping

This paper describes a large dataset of underwater hyperspectral imagery that can be used by researchers in the domains of computer vision, machine learning, remote sensing, and coral reef ecology. We present the details of underwater data acquisition, processing and curation to create this large dataset of coral reef imagery annotated for habitat mapping. A diver-operated hyperspectral imaging system (HyperDiver) was used to survey 147 transects at 8 coral reef sites around the Caribbean island of Curacao. The underwater proximal sensing approach produced fine-scale images of the seafloor, with more than 2.2 billion points of detailed optical spectra. Of these, more than 10 million data points have been annotated for habitat descriptors or taxonomic identity with a total of 47 class labels up to genus- and species-levels. In addition to HyperDiver survey data, we also include images and annotations from traditional (color photo) quadrat surveys conducted along 23 of the 147 transects, which enables comparative reef description between two types of reef survey methods. This dataset promises benefits for efforts in classification algorithms, hyperspectral image segmentation and automated habitat mapping. Dataset: https://doi.org/10.1594/PANGAEA.911300 Dataset License: CC-BY-N