UAV-based photogrammetric point clouds and hyperspectral imaging for mapping biodiversity indicators in boreal forests

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Remote sensing image fusion on 3D scenarios: A review of applications for agriculture and forestry

Three-dimensional (3D) image mapping of real-world scenarios has a great potential to provide the user with a more accurate scene understanding. This will enable, among others, unsupervised automatic sampling of meaningful material classes from the target area for adaptive semi-supervised deep learning techniques. This path is already being taken by the recent and fast-developing research in computational fields, however, some issues related to computationally expensive processes in the integration of multi-source sensing data remain. Recent studies focused on Earth observation and characterization are enhanced by the proliferation of Unmanned Aerial Vehicles (UAV) and sensors able to capture massive datasets with a high spatial resolution. In this scope, many approaches have been presented for 3D modeling, remote sensing, image processing and mapping, and multi-source data fusion. This survey aims to present a summary of previous work according to the most relevant contributions for the reconstruction and analysis of 3D models of real scenarios using multispectral, thermal and hyperspectral imagery. Surveyed applications are focused on agriculture and forestry since these fields concentrate most applications and are widely studied. Many challenges are currently being overcome by recent methods based on the reconstruction of multi-sensorial 3D scenarios. In parallel, the processing of large image datasets has recently been accelerated by General-Purpose Graphics Processing Unit (GPGPU) approaches that are also summarized in this work. Finally, as a conclusion, some open issues and future research directions are presented.European Commission 1381202-GEU PYC20-RE-005-UJA IEG-2021Junta de Andalucia 1381202-GEU PYC20-RE-005-UJA IEG-2021Instituto de Estudios GiennesesEuropean CommissionSpanish Government UIDB/04033/2020DATI-Digital Agriculture TechnologiesPortuguese Foundation for Science and Technology 1381202-GEU FPU19/0010

Unmanned Aerial Vehicles (UAVs) in environmental biology: A Review

Acquiring information about the environment is a key step during each study in the field of environmental biology at different levels, from an individual species to community and biome. However, obtaining information about the environment is frequently difficult because of, for example, the phenological timing, spatial distribution of a species or limited accessibility of a particular area for the field survey. Moreover, remote sensing technology, which enables the observation of the Earth’s surface and is currently very common in environmental research, has many limitations such as insufficient spatial, spectral and temporal resolution and a high cost of data acquisition. Since the 1990s, researchers have been exploring the potential of different types of unmanned aerial vehicles (UAVs) for monitoring Earth’s surface. The present study reviews recent scientific literature dealing with the use of UAV in environmental biology. Amongst numerous papers, short communications and conference abstracts, we selected 110 original studies of how UAVs can be used in environmental biology and which organisms can be studied in this manner. Most of these studies concerned the use of UAV to measure the vegetation parameters such as crown height, volume, number of individuals (14 studies) and quantification of the spatio-temporal dynamics of vegetation changes (12 studies). UAVs were also frequently applied to count birds and mammals, especially those living in the water. Generally, the analytical part of the present study was divided into following sections: (1) detecting, assessing and predicting threats on vegetation, (2) measuring the biophysical parameters of vegetation, (3) quantifying the dynamics of changes in plants and habitats and (4) population and behaviour studies of animals. At the end, we also synthesised all the information showing, amongst others, the advances in environmental biology because of UAV application. Considering that 33% of studies found and included in this review were published in 2017 and 2018, it is expected that the number and variety of applications of UAVs in environmental biology will increase in the future

Assessing Biodiversity in Boreal Forests with UAV-Based Photogrammetric Point Clouds and Hyperspectral Imaging

Forests are the most diverse terrestrial ecosystems and their biological diversity includes trees, but also other plants, animals, and micro-organisms. One-third of the forested land is in boreal zone; therefore, changes in biological diversity in boreal forests can shape biodiversity, even at global scale. Several forest attributes, including size variability, amount of dead wood, and tree species richness, can be applied in assessing biodiversity of a forest ecosystem. Remote sensing offers complimentary tool for traditional field measurements in mapping and monitoring forest biodiversity. Recent development of small unmanned aerial vehicles (UAVs) enable the detailed characterization of forest ecosystems through providing data with high spatial but also temporal resolution at reasonable costs. The objective here is to deepen the knowledge about assessment of plot-level biodiversity indicators in boreal forests with hyperspectral imagery and photogrammetric point clouds from a UAV. We applied individual tree crown approach (ITC) and semi-individual tree crown approach (semi-ITC) in estimating plot-level biodiversity indicators. Structural metrics from the photogrammetric point clouds were used together with either spectral features or vegetation indices derived from hyperspectral imagery. Biodiversity indicators like the amount of dead wood and species richness were mainly underestimated with UAV-based hyperspectral imagery and photogrammetric point clouds. Indicators of structural variability (i.e., standard deviation in diameter-at-breast height and tree height) were the most accurately estimated biodiversity indicators with relative RMSE between 24.4% and 29.3% with semi-ITC. The largest relative errors occurred for predicting deciduous trees (especially aspen and alder), partly due to their small amount within the study area. Thus, especially the structural diversity was reliably predicted by integrating the three-dimensional and spectral datasets of UAV-based point clouds and hyperspectral imaging, and can therefore be further utilized in ecological studies, such as biodiversity monitoring

Using Unmanned Aerial Systems for Deriving Forest Stand Characteristics in Mixed Hardwoods of West Virginia

Forest inventory information is a principle driver for forest management decisions. Information gathered through these inventories provides a summary of the condition of forested stands. The method by which remote sensing aids land managers is changing rapidly. Imagery produced from unmanned aerial systems (UAS) offer high temporal and spatial resolutions to small-scale forest management. UAS imagery is less expensive and easier to coordinate to meet project needs compared to traditional manned aerial imagery. This study focused on producing an efficient and approachable work flow for producing forest stand board volume estimates from UAS imagery in mixed hardwood stands of West Virginia. A supplementary aim of this project was to evaluate which season was best to collect imagery for forest inventory. True color imagery was collected with a DJI Phantom 3 Professional UAS and was processed in Agisoft Photoscan Professional. Automated tree crown segmentation was performed with Trimble eCognition Developer’s multi-resolution segmentation function with manual optimization of parameters through an iterative process. Individual tree volume metrics were derived from field data relationships and volume estimates were processed in EZ CRUZ forest inventory software. The software, at best, correctly segmented 43% of the individual tree crowns. No correlation between season of imagery acquisition and quality of segmentation was shown. Volume and other stand characteristics were not accurately estimated and were faulted by poor segmentation. However, the imagery was able to capture gaps consistently and provide a visualization of forest health. Difficulties, successes and time required for these procedures were thoroughly noted

Multitemporaalisen hyper- ja multispektrisen UAV kuvauksen käyttö kuusen kaarnakuoriaistuhoissa

Various biotic and abiotic stresses are threatening forests. Modern remote sensing technologies provide powerful means for monitoring forest health, and provide a sustainable basis for forest management and protection. The objective of this study was to develop unmanned aerial vehicle (UAV) based spectral remote sensing technologies for tree health assessment, particularly, for detecting the European spruce bark beetle (Ips typographus L.) attacks. Our focus was to study the early detection of bark beetle attack, i.e. the “green attack” phase. This is a difficult remote sensing task as there does not exist distinct symptoms that can be observed by the human eye. A test site in a Norway spruce (Picea abies (L.) Karst.) dominated forest was established in Southern-Finland in summer 2019. It had an emergent bark beetle outbreak and it was also suffering from other stress factors, especially the root and butt rot (Heterobasidion annosum (Fr.) Bref. s. lato). Altogether seven multitemporal hyper- and multispectral UAV remote sensing datasets were captured from the area in August to October 2019. Firstly, we explored deterioration of tree health and development of spectral symptoms using a time series of UAV hyperspectral imagery. Secondly, we trained assessed a machine learning model for classification of spruce health into classes of “bark beetle green attack”, “root-rot”, and “healthy”. Finally, we demonstrated the use of the model in tree health mapping in a test area. Our preliminary results were promising and indicated that the green attack phase could be detected using the accurately calibrated spectral image data.Peer reviewe

Geometric and Reflectance Signature Characterization of Complex Canopies Using Hyperspectral Stereoscopic Images from Uav and Terrestrial Platforms

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