Inbreeding depression in red deer calves

BACKGROUND Understanding the fitness consequences of inbreeding is of major importance for evolutionary and conservation biology. However, there are few studies using pedigree-based estimates of inbreeding or investigating the influence of environment and age variation on inbreeding depression in natural populations. Here we investigated the consequences of variation in inbreeding coefficient for three juvenile traits, birth date, birth weight and first year survival, in a wild population of red deer, considering both calf and mother's inbreeding coefficient. We also tested whether inbreeding depression varied with environmental conditions and maternal age. RESULTS We detected non-zero inbreeding coefficients for 22% of individuals with both parents and at least one grandparent known (increasing to 42% if the dataset was restricted to those with four known grandparents). Inbreeding depression was evident for birth weight and first year survival but not for birth date: the first year survival of offspring with an inbreeding coefficient of 0.25 was reduced by 77% compared to offspring with an inbreeding coefficient of zero. However, it was independent of measures of environmental variation and maternal age. The effect of inbreeding on birth weight appeared to be driven by highly inbred individuals (F = 0.25). On the other hand first year survival showed strong inbreeding depression that was not solely driven by individuals with the highest inbreeding coefficients, corresponding to an estimate of 4.35 lethal equivalents. CONCLUSIONS These results represent a rare demonstration of inbreeding depression using pedigree-based estimates in a wild mammal population and highlight the potential strength of effects on key components of fitness.This research was supported by a NERC grant to LEBK, JMP and THCB, NERC and BBSRC fellowships to DHN and a Royal Society fellowship to LEBK

Exploring the relationship between tychoparthenogenesis and inbreeding depression in the Desert Locust, Schistocerca gregaria

Tychoparthenogenesis, a form of asexual reproduction in which a small proportion of unfertilized eggs can hatch spontaneously, could be an intermediate evolutionary link in the transition from sexual to parthenogenetic reproduction. The lower fitness of tychoparthenogenetic offspring could be due to either developmental constraints or to inbreeding depression in more homozygous individuals. We tested the hypothesis that in populations where inbreeding depression has been purged, tychoparthenogenesis may be less costly. To assess this hypothesis, we compared the impact of inbreeding and parthenogenetic treatments on eight life-history traits (five measuring inbreeding depression and three measuring inbreeding avoidance) in four laboratory populations of the desert locust, Schistocerca gregaria, with contrasted demographic histories. Overall, we found no clear relationship between the population history (illustrated by the levels of genetic diversity or inbreeding) and inbreeding depression, or between inbreeding depression and parthenogenetic capacity. First, there was a general lack of inbreeding depression in every population, except in two populations for two traits. This pattern could not be explained by the purging of inbreeding load in the studied populations. Second, we observed large differences between populations in their capacity to reproduce through tychoparthenogenesis. Only the oldest laboratory population successfully produced parthenogenetic offspring. However, the level of inbreeding depression did not explain the differences in parthenogenetic success between all studied populations. Differences in development constraints may arise driven by random and selective processes between populations. (Résumé d'auteur

Female mating preferences for outbred versus inbred males are conditional upon the female's own inbreeding status

Inbreeding occurs when relatives mate with each other, and it often has detrimental effects for the fitness of any resulting offspring. It is an important issue in ecology and evolutionary biology with profound implications for genetic variation and the evolution of mating systems and reproductive strategies. For example, inbreeding may shape mate choice through the avoidance of outbred, related individuals to prevent inbreeding, or through the avoidance of inbred, unrelated individuals that have been produced through inbreeding. Although the former has been studied extensively, little is known about mating preferences based on the inbreeding status of potential partners. It is also unclear whether these mating preferences are influenced by the inbreeding status of the choosing sex. Here, we examined female mating preferences for outbred versus inbred males using dichotomous choice tests in the burying beetle Nicrophorus vespilloides. We found that these mating preferences were conditional upon the female's own inbreeding status: inbred females preferentially mated with outbred males, whereas outbred females did not show such a preference. Our findings suggest that inbred males suffer reduced mating success only when interacting with inbred females. In species where this is the case, the fitness costs of inbreeding with respect to male mating success will therefore depend on the frequency of inbred females relative to outbred females, which depends on the rate of inbreeding in the population

An effective rotational mating scheme for inbreeding reduction in captive populations illustrated by the rare sheep breed

Within breeds and other captive populations, the risk of high inbreeding rates and loss of diversity can be high within (small) herds or subpopulations. When exchange of animals between different subpopulations is organised according to a rotational mating scheme, inbreeding rates can be restricted. Two such schemes, a breeding circle and a maximum avoidance of inbreeding scheme, are compared. In a breeding circle, flocks are organised in a circle where each flock serves as a donor flock for another flock, and the same donor–recipient combination is used in each breeding season. In the maximum inbreeding avoidance scheme, donor¿recipient combinations change each year so that the use of the same combination is postponed as long as possible. Data from the Kempisch Heideschaap were used with computer simulations to determine the long-term effects of different breeding schemes. Without exchanging rams between flocks, high inbreeding rates (>1.5% per year) occurred. Both rotational mating schemes reduced inbreeding rates to on average 0.16% per year and variation across flocks in inbreeding rates, caused by differences in flock size, almost disappeared. Inbreeding rates with maximum inbreeding avoidance were more variable than with a breeding circle. Moreover, a breeding circle is easier to implement and operate. Breeding circles are thus efficient and flexible and can also be efficient for other captive populations, such as zoo populations of endangered wild specie

The use of frozen semen to minimize inbreeding in small populations

In this study, we compared the average coancestry and inbreeding levels for two genetic conservation schemes in which frozen semen from a gene bank is used to reduce the inbreeding in a live population. For a simple scheme in which only semen of generation-0 (G0) sires is used, the level of inbreeding asymptotes to 1/(2N), where N is the number of newborn sires in the base generation and rate of inbreeding goes to zero. However, when only sires of G0 are selected, all genes will eventually descend from the founder sires and all genes from the founder dams are lost. We propose an alternative scheme in which N sires from generation 1 (G1), as well as the N sires from G0, have semen conserved, and the semen of G0 and G1 sires is used for dams of odd and even generation numbers, respectively. With this scheme, the level of inbreeding asymptotes to 1/(3N) and the genes of founder dams are also conserved, because 50% of the genes of sires of G1 are derived from the founder dams. A computer simulation study shows that this is the optimum design to minimize inbreeding, even if semen from later generations is available

A study of some aspects of growth and reproduction in two inbred lines of mice and their crosses : a thesis presented in partial fulfilment of the requirements for the degree of Master of Agricultural Science in Massey University of Manawatu

The mating of closely related individuals is generally believed to result in inferior offspring. Recognition of this danger has been suggested as the reason for evolution of human social customs. However, historical researches suggest that inbreeding unavoidably occurred in small, isolated, ancient communities, and marriage of close relatives was encouraged in the Egyptian, Greek and Hebrew civilisations (Zirkle, 1952). Inbreeding is likely to have occurred in the isolated flocks of nomads, but it is probable that inbreeding depression, as such, was not recognised until the eighteenth century when the early livestock improvers are reputed to have found that the fertility of their animals deteriorated with continued inbreeding. Hybrid vigour from cross breeding plants was described by Koelreuter (1766) and confirmed by later botanists., .After much detailed work, Darwin (1876) concluded: " •••cross fertilisation is generally beneficial and self fertilisation injurious." and that (a) Mechanisms exist widely for the avoidance of inbreeding. (b) Inbreeding has effects likely to incur selective disadvantages. No suitable hypothesis could account for the usually deleterious effects of inbreeding, or the reverse phenomenon of hybrid vigour until the rediscovery of Mendel's work in 1900. The effects of inbreeding can now be explained in terms of the dominance and recessiveness of genes. (Falconer, 1960). The aim of experiments reported in this thesis was to study growth, reproduction and mortality in two inbred lines of mice, derived from common ancestors, to find if differences between them had arisen during inbreeding. Reciprocal crosses and matings of the F1 progeny of these crosses were made to find if hybridisation of the parent lines led to improvements of these charact­eristics. This study was suggested by Drs. D.S.. Flux, M.F. McDonald and R.E. Munford to whom the author is indebted for advice and guidance. The author also wishes to acknowledge the assistance of Mr. E. Ormsby in histological preparations, of Mr. P .S. Dale in photomicrography, and of Mr. C. Muir who drew some of the figures reproduced in this thesis. Thanks are also due to the staff of the University Library for their efforts in obtaining literature. [From Preface

The effects of inbreeding on disease susceptibility:Gyrodactylus turnbulli infection of guppies, Poecilia reticulata

Inbreeding can threaten population persistence by reducing disease resistance through the accelerated loss of gene diversity (i.e. heterozygosity). Such inbreeding depression can affect many different fitness-related traits, including survival, reproductive success, and parasite susceptibility. Empirically quantifying the effects of inbreeding on parasite resistance is therefore important for ex-situ conservation of vertebrates. The present study evaluates the disease susceptibility of individuals bred under three different breeding regimes (inbred, crossed with full siblings; control, randomly crossed mating; and fully outbred). Specifically, we examined the relationship between inbreeding coefficient (F-coefficient) and susceptibility to Gyrodactylus turnbulli infection in a live bearing vertebrate, the guppy Poecilia reticulata. Host-breeding regime significantly affected the trajectories of parasite population growth on individual fish. Inbred fish showed significantly higher mean parasite intensity than fish from the control and outbred breeding regimes, and in addition, inbred fish were slower in purging their gyrodactylid infections. We discuss the role of inbreeding on the various arms of the immune system, and argue that the increased disease susceptibility of inbred individuals could contribute to the extinction vortex. This is one of the first studies to quantify the effects of inbreeding and breeding regime on disease susceptibility in a captive bred vertebrate of wild origin, and it highlights the risks faced by small (captive-bred) populations when exposed to their native parasites

Reproductive success through high pollinator visitation rates despite self incompatibility in an endangered wallflower

PREMISE OF THE STUDY: Self incompatibility (SI) in rare plants presents a unique challenge—SI protects plants from inbreeding depression, but requires a sufficient number of mates and xenogamous pollination. Does SI persist in an endangered polyploid? Is pollinator visitation sufficient to ensure reproductive success? Is there evidence of inbreeding/outbreeding depression? We characterized the mating system, primary pollinators, pollen limitation, and inbreeding/outbreeding depression in Erysimum teretifolium to guide conservation efforts. METHODS: We compared seed production following self pollination and within- and between-population crosses. Pollen tubes were visualized after self pollinations and between-population pollinations. Pollen limitation was tested in the field. Pollinator observations were quantified using digital video. Inbreeding/outbreeding depression was assessed in progeny from self and outcross pollinations at early and later developmental stages. KEY RESULTS: Self-pollination reduced seed set by 6.5× and quadrupled reproductive failure compared with outcross pollination. Pollen tubes of some self pollinations were arrested at the stigmatic surface. Seed-set data indicated strong SI, and fruit-set data suggested partial SI. Pollinator diversity and visitation rates were high, and there was no evidence of pollen limitation. Inbreeding depression (δ) was weak for early developmental stages and strong for later developmental stages, with no evidence of outbreeding depression. CONCLUSIONS: The rare hexaploid E. teretifolium is largely self incompatible and suffers from late-acting inbreeding depression. Reproductive success in natural populations was accomplished through high pollinator visitation rates consistent with a lack of pollen limitation. Future reproductive health for this species will require large population sizes with sufficient mates and a robust pollinator community

The correlation between inbreeding and performance in the Hanoverian sport horse : a thesis presented for the degree Master of Science in Animal Science at Massey University

The following content is not available due to proprietary nature. Please contact the author. "Chapter 12 Appendices and Annova – see CD attached.”The aim of this thesis was to examine the relationship between inbreeding and performance in the Hanoverian Sport Horse. A total of 84,724 hanoverian horses born between the years 1990 and 2009 were used for the study, of which 78,907 had their own performance records. Pedigree records were traced back as far as possible, with a maximum of 37 generations used. There was 100% completeness of pedigree up to the grandparent generation for all horses. The majority of horses (80%) had completeness of pedigree past the sixth generation. Inbreeding were calculated using two methods; the Meuwissen method and the van Raden Method. Both methods gave identical results (100% fit). As aquantitative measure of performance, the Integrated Estimated Breeding Value (iEBV), using both breed and competition results was used. The Evaluation was carried out using the BLUP (Best Linear Unbiased Prediction) Multitrait Repeatability Animal Model. Two different GLM were run with the inbreeding coefficient (IBC) modelled as either a continuous variable or as a fixed class of five differing levels of inbreeding (IBC=0.00; 0<IBC≤0.01: 0.01<IBC≤0.02; 0.02<IBC≤0.05; 0.05<IBC). Age and Sex were included as fixed effects within the model. All subgroups in both dressage and jumping data, with either fixed effect or linear covariate for the IBC, generated a similar result. Due to the large sample size there was a significant (p<0.001) relationship between inbreeding (IBC) and performance (iEBV). In dressage horses there was a significant positive relationship in all categories while in jumping horses there was a significant negative relationship in all catagories. However, the effect of inbreeding on iEBV explained only ±1% of the variance in the models. The models were simultaneously adjusted for the bias of the confounding factor of sex which also accounted for ±1% of the variance. The majority of variance in iEBV is due to the year cohort effect which accounts for ± 95%. The low level of inbreeding (±1.5%) and lack of biological effect on iEBV indicate that inbreeding is not a problem in the Hannoverian horse