2,022 research outputs found
VIOLA - A multi-purpose and web-based visualization tool for neuronal-network simulation output
Neuronal network models and corresponding computer simulations are invaluable
tools to aid the interpretation of the relationship between neuron properties,
connectivity and measured activity in cortical tissue. Spatiotemporal patterns
of activity propagating across the cortical surface as observed experimentally
can for example be described by neuronal network models with layered geometry
and distance-dependent connectivity. The interpretation of the resulting stream
of multi-modal and multi-dimensional simulation data calls for integrating
interactive visualization steps into existing simulation-analysis workflows.
Here, we present a set of interactive visualization concepts called views for
the visual analysis of activity data in topological network models, and a
corresponding reference implementation VIOLA (VIsualization Of Layer Activity).
The software is a lightweight, open-source, web-based and platform-independent
application combining and adapting modern interactive visualization paradigms,
such as coordinated multiple views, for massively parallel neurophysiological
data. For a use-case demonstration we consider spiking activity data of a
two-population, layered point-neuron network model subject to a spatially
confined excitation originating from an external population. With the multiple
coordinated views, an explorative and qualitative assessment of the
spatiotemporal features of neuronal activity can be performed upfront of a
detailed quantitative data analysis of specific aspects of the data.
Furthermore, ongoing efforts including the European Human Brain Project aim at
providing online user portals for integrated model development, simulation,
analysis and provenance tracking, wherein interactive visual analysis tools are
one component. Browser-compatible, web-technology based solutions are therefore
required. Within this scope, with VIOLA we provide a first prototype.Comment: 38 pages, 10 figures, 3 table
Low-frequency in the Default Mode Brain Network from Spiking Neuron Model
The approaches for regarding the functional characteristicsof the brain as the dynamical behavior of a multiscaleneural system using neural network models are continuedto attempt since fluctuations on blood–oxygen–level–dependent(BOLD) signals of the brain at a rate lower than 0:1 Hzhave been observed by functional magnetic resonance imaging(fMRI) machines under the dozing situation. We construct acomplex brain network model by functionally connecting neuralclusters composed of spiking neurons with a complex network.By transducing to BOLD signals from firing patterns obtainedby our new model, the network dynamics of the neural systemand its behavior are quantitatively discussed
Characterization and Compensation of Network-Level Anomalies in Mixed-Signal Neuromorphic Modeling Platforms
Advancing the size and complexity of neural network models leads to an ever
increasing demand for computational resources for their simulation.
Neuromorphic devices offer a number of advantages over conventional computing
architectures, such as high emulation speed or low power consumption, but this
usually comes at the price of reduced configurability and precision. In this
article, we investigate the consequences of several such factors that are
common to neuromorphic devices, more specifically limited hardware resources,
limited parameter configurability and parameter variations. Our final aim is to
provide an array of methods for coping with such inevitable distortion
mechanisms. As a platform for testing our proposed strategies, we use an
executable system specification (ESS) of the BrainScaleS neuromorphic system,
which has been designed as a universal emulation back-end for neuroscientific
modeling. We address the most essential limitations of this device in detail
and study their effects on three prototypical benchmark network models within a
well-defined, systematic workflow. For each network model, we start by defining
quantifiable functionality measures by which we then assess the effects of
typical hardware-specific distortion mechanisms, both in idealized software
simulations and on the ESS. For those effects that cause unacceptable
deviations from the original network dynamics, we suggest generic compensation
mechanisms and demonstrate their effectiveness. Both the suggested workflow and
the investigated compensation mechanisms are largely back-end independent and
do not require additional hardware configurability beyond the one required to
emulate the benchmark networks in the first place. We hereby provide a generic
methodological environment for configurable neuromorphic devices that are
targeted at emulating large-scale, functional neural networks
Associative memory of phase-coded spatiotemporal patterns in leaky Integrate and Fire networks
We study the collective dynamics of a Leaky Integrate and Fire network in
which precise relative phase relationship of spikes among neurons are stored,
as attractors of the dynamics, and selectively replayed at differentctime
scales. Using an STDP-based learning process, we store in the connectivity
several phase-coded spike patterns, and we find that, depending on the
excitability of the network, different working regimes are possible, with
transient or persistent replay activity induced by a brief signal. We introduce
an order parameter to evaluate the similarity between stored and recalled
phase-coded pattern, and measure the storage capacity. Modulation of spiking
thresholds during replay changes the frequency of the collective oscillation or
the number of spikes per cycle, keeping preserved the phases relationship. This
allows a coding scheme in which phase, rate and frequency are dissociable.
Robustness with respect to noise and heterogeneity of neurons parameters is
studied, showing that, since dynamics is a retrieval process, neurons preserve
stablecprecise phase relationship among units, keeping a unique frequency of
oscillation, even in noisy conditions and with heterogeneity of internal
parameters of the units
Sleep-like slow oscillations improve visual classification through synaptic homeostasis and memory association in a thalamo-cortical model
The occurrence of sleep passed through the evolutionary sieve and is
widespread in animal species. Sleep is known to be beneficial to cognitive and
mnemonic tasks, while chronic sleep deprivation is detrimental. Despite the
importance of the phenomenon, a complete understanding of its functions and
underlying mechanisms is still lacking. In this paper, we show interesting
effects of deep-sleep-like slow oscillation activity on a simplified
thalamo-cortical model which is trained to encode, retrieve and classify images
of handwritten digits. During slow oscillations,
spike-timing-dependent-plasticity (STDP) produces a differential homeostatic
process. It is characterized by both a specific unsupervised enhancement of
connections among groups of neurons associated to instances of the same class
(digit) and a simultaneous down-regulation of stronger synapses created by the
training. This hierarchical organization of post-sleep internal representations
favours higher performances in retrieval and classification tasks. The
mechanism is based on the interaction between top-down cortico-thalamic
predictions and bottom-up thalamo-cortical projections during deep-sleep-like
slow oscillations. Indeed, when learned patterns are replayed during sleep,
cortico-thalamo-cortical connections favour the activation of other neurons
coding for similar thalamic inputs, promoting their association. Such mechanism
hints at possible applications to artificial learning systems.Comment: 11 pages, 5 figures, v5 is the final version published on Scientific
Reports journa
Resting state neural networks and energy metabolism
The human brain is an energy hungry organ. How that brain manages its energy consumption in maintaining its health and executing sensori-motor and cognitive functions is an important but overlooked research area in contemporary cognitive neuroscience. It is argued here that the principal method whereby the human brain manages its energy utilization is through maintaining a relatively elevated level of activity in what can be referred to as 'resting state networks' (RSN). The elevated energy consumption in the human brain's varied RSNs is driven and maintained by a physiological mechanism we call the Frame-Formation Energy Cycle (FFEC). Running the FFEC cycle is metabolically expensive and therefore offers a mechanism to explain the increased energy consumption in human-brain RSNs as compared to regions not involved in such networks. © 2017 IEEE
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Efficient spiking neural network model of pattern motion selectivity in visual cortex
Simulating large-scale models of biological motion perception is challenging, due to the required memory to store the network structure and the computational power needed to quickly solve the neuronal dynamics. A low-cost yet high-performance approach to simulating large-scale neural network models in real-time is to leverage the parallel processing capability of graphics processing units (GPUs). Based on this approach, we present a two-stage model of visual area MT that we believe to be the first large-scale spiking network to demonstrate pattern direction selectivity. In this model, component-direction- selective (CDS) cells in MT linearly combine inputs from V1 cells that have spatiotemporal receptive fields according to the motion energy model of Simoncelli and Heeger. Pattern-direction-selective (PDS) cells in MT are constructed by pooling over MT CDS cells with a wide range of preferred directions. Responses of our model neurons are comparable to electrophysiological results for grating and plaid stimuli as well as speed tuning. The behavioral response of the network in a motion discrimination task is in agreement with psychophysical data. Moreover, our implementation outperforms a previous implementation of the motion energy model by orders of magnitude in terms of computational speed and memory usage. The full network, which comprises 153,216 neurons and approximately 40 million synapses, processes 20 frames per second of a 40∈×∈40 input video in real-time using a single off-the-shelf GPU. To promote the use of this algorithm among neuroscientists and computer vision researchers, the source code for the simulator, the network, and analysis scripts are publicly available. © 2014 Springer Science+Business Media New York
The effect of heterogeneity on decorrelation mechanisms in spiking neural networks: a neuromorphic-hardware study
High-level brain function such as memory, classification or reasoning can be
realized by means of recurrent networks of simplified model neurons. Analog
neuromorphic hardware constitutes a fast and energy efficient substrate for the
implementation of such neural computing architectures in technical applications
and neuroscientific research. The functional performance of neural networks is
often critically dependent on the level of correlations in the neural activity.
In finite networks, correlations are typically inevitable due to shared
presynaptic input. Recent theoretical studies have shown that inhibitory
feedback, abundant in biological neural networks, can actively suppress these
shared-input correlations and thereby enable neurons to fire nearly
independently. For networks of spiking neurons, the decorrelating effect of
inhibitory feedback has so far been explicitly demonstrated only for
homogeneous networks of neurons with linear sub-threshold dynamics. Theory,
however, suggests that the effect is a general phenomenon, present in any
system with sufficient inhibitory feedback, irrespective of the details of the
network structure or the neuronal and synaptic properties. Here, we investigate
the effect of network heterogeneity on correlations in sparse, random networks
of inhibitory neurons with non-linear, conductance-based synapses. Emulations
of these networks on the analog neuromorphic hardware system Spikey allow us to
test the efficiency of decorrelation by inhibitory feedback in the presence of
hardware-specific heterogeneities. The configurability of the hardware
substrate enables us to modulate the extent of heterogeneity in a systematic
manner. We selectively study the effects of shared input and recurrent
connections on correlations in membrane potentials and spike trains. Our
results confirm ...Comment: 20 pages, 10 figures, supplement
Visual attention deficits in schizophrenia can arise from inhibitory dysfunction in thalamus or cortex
Schizophrenia is associated with diverse cognitive deficits, including disorders of attention-related oculomotor behavior. At the structural level, schizophrenia is associated with abnormal inhibitory control in the circuit linking cortex and thalamus. We developed a spiking neural network model that demonstrates how dysfunctional inhibition can degrade attentive gaze control. Our model revealed that perturbations of two functionally distinct classes of cortical inhibitory neurons, or of the inhibitory thalamic reticular nucleus, disrupted processing vital for sustained attention to a stimulus, leading to distractibility. Because perturbation at each circuit node led to comparable but qualitatively distinct disruptions in attentive tracking or fixation, our findings support the search for new eye movement metrics that may index distinct underlying neural defects. Moreover, because the cortico-thalamic circuit is a common motif across sensory, association, and motor systems, the model and extensions can be broadly applied to study normal function and the neural bases of other cognitive deficits in schizophrenia.R01 MH057414 - NIMH NIH HHS; R01 MH101209 - NIMH NIH HHS; R01 NS024760 - NINDS NIH HHSPublished versio
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