Examination of the Potential of Terrestrial Laser Scanning and Structure-from-Motion Photogrammetry for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. Destructive AGB measurements, although accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield precise 3D structural measurements of vegetation quite rapidly. Recent advances have led to the successful application of TLS and SfM in woody biomass estimation, but application in natural grassland systems remains largely untested. The potential of these techniques for AGB estimation is examined considering 11 grass plots with a range of biomass in South Dakota, USA. Volume metrics extracted from the TLS and SfM 3D point clouds, and also conventional disc pasture meter settling heights, were compared to destructively harvested AGB total (grass and litter) and AGB grass plot measurements. Although the disc pasture meter was the most rapid method, it was less effective in AGB estimation (AGBgrass r2 = 0.42, AGBtotal r2 = 0.32) than the TLS (AGBgrass r2 = 0.46, AGBtotal r2 = 0.57) or SfM (AGBgrass r2 = 0.54, AGBtotal r2 = 0.72) which both demonstrated their utility for rapid AGB estimation of grass systems

Examination of the Potential of Structure-from-Motion Photogrammetry and Terrestrial Laser Scanning for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. While destructive sampling of AGB is highly accurate, it is time consuming and often precludes repeat temporal sampling or sampling in sensitive ecosystems. Consequently, a number of nondestructive techniques that relate grass structural properties to AGB have been developed. This study investigated the application of two recent technologies, Terrestrial Laser Scanning (TLS) and Structurefrom- Motion (SfM), in the development of rapid nondestructive AGB estimation of grassland plots. TLS and SfM volume metrics generated using a rasterized surface differencing method were linearly related to destructively measured total AGB and grass AGB excluding all litter, and results were compared to the conventional disc pasture meter. The linear models were assessed using a leave-one-out cross validation scheme. The disc pasture meter was found to be the least reliable method in assessing total AGB (r2 = 0.32, RMSELOOCV = 269 g/m2). SfM (r2 = 0.74, RMSELOOCV = 169 g/m2) outperformed TLS (r2 = 0.56, RMSELOOCV = 219 g/m2), though a much larger slope in SfM regressions suggests an increased sensitivity to error. Litter removal decreased the effectiveness of AGB estimation for both TLS (r2 = 0.49) and SfM (r2 = 0.51) but increased the fit of disc pasture meter estimations (r2 = 0.42), highlighting the complex relationship between litter accumulation and AGB. TLS and SfM derived volumes were shown to be insensitive to cell dimensions when calculating volume provided cell dimensions were large enough to ensure no empty cells occurred. Using observed ground surfaces in volumetric calculations rather than an estimated ground plane increased r2 to 0.63 for TLS and 0.77 for SfM. Though the disc pasture meter was found to be the most rapid of the three methods, TLS and SfM both out performed it and have clearly demonstrated their potential utility for AGB estimation of grass systems. Their ability to systematically collect measurements over larger spatial extents than those investigated here could greatly outpace the disc pasture meter’s predictive capabilities and speed

Examination of the Potential of Terrestrial Laser Scanning and Structure-from-Motion Photogrammetry for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. Destructive AGB measurements, although accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield precise 3D structural measurements of vegetation quite rapidly. Recent advances have led to the successful application of TLS and SfM in woody biomass estimation, but application in natural grassland systems remains largely untested. The potential of these techniques for AGB estimation is examined considering 11 grass plots with a range of biomass in South Dakota, USA. Volume metrics extracted from the TLS and SfM 3D point clouds, and also conventional disc pasture meter settling heights, were compared to destructively harvested AGB total (grass and litter) and AGB grass plot measurements. Although the disc pasture meter was the most rapid method, it was less effective in AGB estimation (AGBgrass r 2 = 0.42, AGBtotal r 2 = 0.32) than the TLS (AGBgrass r 2 = 0.46, AGBtotal r 2 = 0.57) or SfM (AGBgrass r 2 = 0.54, AGBtotal r 2 = 0.72) which both demonstrated their utility for rapid AGB estimation of grass systems

Three-dimensional digital mapping of ecosystems: a new era in spatial ecology

Ecological processes occur over multiple spatial, temporal and thematic scales in three-dimensional (3D) ecosystems. Characterizing and monitoring change in 3D structure at multiple scales is challenging within the practical constraints of conventional ecological tools. Remote sensing from satellites and crewed aircraft has revolutionized broad-scale spatial ecology, but fine-scale patterns and processes operating at sub-metre resolution have remained understudied over continuous extents. We introduce two high-resolution remote sensing tools for rapid and accurate 3D mapping in ecology—terrestrial laser scanning and structure-from-motion photogrammetry. These technologies are likely to become standard sampling tools for mapping and monitoring 3D ecosystem structure across currently under-sampled scales. We present practical guidance in the use of the tools and address barriers to widespread adoption, including testing the accuracy of structure-from-motion models for ecologists. We aim to highlight a new era in spatial ecology that uses high-resolution remote sensing to interrogate 3D digital ecosystems

Surveying pasture communities in diachronic analyses by 3D models: the diachronic canopy variation model

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Monitoring biomass in two heterogeneous mountain pasture communities by image based 3D point cloud derived predictors

Abstract Primary productivity is a robust indicator of ecosystem functioning because of its close relationships with the stability of the ecological systems. In ecological research, the above ground biomass (AGB) is the most commonly used proxy of primary productivity. However, despite their ecological relevance, the estimates of primary productivity are not addressed by current protocols for monitoring the conservation status of the habitats of Community interest. In this paper, we analyse the accuracy of AGB measurements obtained by image-derived 3D reconstructions of two contrasting mountain grasslands listed as habitats of Community interest in the Annex I of the Habitats Directive. More specifically, we compared the accuracy of the AGB estimates provided by four models, based on four different predictors (height, volume, volume adjusted, and cover volume), in order to evaluate their robustness against within- and between-community heterogeneity. Our study revealed that AGB measures computed from 3D vegetation reconstructions can be an effective way to evaluate primary productivity in herbaceous communities with complex structure and composition patterns. In particular, the vegetation height showed to have the highest correlation with direct AGB measurements. However, the vegetation volume, once adjusted by the coefficient of density, resulted to be the most effective proxy due to the lowest error level. Therefore, such a parameter could be routinely used as a non-destructive indicator for monitoring habitats of particular conservation concern. As a major limitation for this approach, we detected some loss of predictivity power at very low productivity rates

A Sense of Scale: Mapping Exotic Annual Grasses with Satellite Imagery Across a Landscape and Quantifying Their Biomass at a Plot Level with Structure-from-Motion in a Semi-Arid Ecosystem

The native vegetation communities in the sagebrush steppe, a semi-arid ecosystem type, are under threat from exotic annual grasses. Exotic annual grasses increase fire severity and frequency, decrease biodiversity, and reduce soil carbon storage amongst other ecosystem services. The invasion of exotic annual grasses is causing detrimental impacts to land use by eliminating forage for livestock and creating a huge economic cost from fire control and post-fire restoration. To combat invasion, land managers need to know what exotic annual grasses are present, where they are invading, and estimates of their biomass. Mapping exotic annual grasses is challenging because many areas in the sagebrush steppe are difficult to access; yet field measurements are the main method to identify and quantify their existence. In this study, we address this challenge by exploring the use of both landscape-scale and plot-scale observations with remote sensing. First, we use satellite imagery to map where exotic annual grasses are invading and identify the native species which are being encroached upon. Second, we investigate the use of fine-scale imagery for non-destructive measurements of biomass of exotic annual grasses. Understanding the location of exotic annual grasses is important for restoration efforts, e.g. large swath (~100m) herbicide spraying. Restoration efforts are expensive and often ineffective in areas already dominated by exotic annual grasses. Early detection of exotic annual grasses in sagebrush and native grasses communities will increase the chances of effective ecosystem restoration. We used Sentinel-2 satellite imagery in Google Earth Engine, a cloud computing platform, to train a random forest (RF) machine learning algorithm to map vegetation in ~150,000 acres in the sagebrush steppe in southeast Idaho. The result is a classification map of vegetation (overall accuracy of 72%) and a map of percent cover of annual grass (R2 = 0.58). The combination of these two maps will allow land managers to target areas of restoration and make informed decisions about where to allow grazing. In addition to knowing what exotic annual grasses exist and their percent cover, detailed information about their biomass is important for understanding fuel loads and forage quality. Structure from Motion (SfM) is a photogrammetry technique that uses digital images to develop 3-dimensional point clouds that can be transformed into volumetric measurements of biomass. The SfM technique has the potential to quantify biomass estimates across multiple plots while minimizing field work. We developed allometric equations relating SfM-derived volume (m3) to biomass (g/m2) for a study area in southeast Oregon. The resulting equation showed a positive relationship (R2 = 0.51) between the log transformed SfM-derived volume and log transformed biomass when litter was removed. This relationship shows promise in being upscaled to larger surveys using aerial platforms. This method can reduce the need for destructively harvesting biomass, and thus allow field work to cover a greater spatial extent. Ultimately, increasing spatial coverage for biomass will improve accuracy in quantifying fuel loads and carbon storage, providing insights to how these exotic plants are altering ecosystem services

Above-ground biomass estimation of arable crops using UAV-based SfM photogrammetry

This is an Accepted Manuscript of an article published by Taylor & Francis in Geocarto International on 3 dec 2018, available online: http://www.tandfonline.com/10.1080/10106049.2018.1552322Methods of estimating the total amount of above-ground biomass (AGB) in crop fields are generally based on labourious, random, and destructive in situ sampling. This study proposes a methodology for estimating herbaceous crop biomass using conventional optical cameras and structure from motion (SfM) photogrammetry. The proposed method is based on the determination of volumes according to the difference between a digital terrain model (DTM) and digital surface model (DSM) of vegetative cover. A density factor was calibrated based on a subset of destructive random samples to relate the volume and biomass and efficiently quantify the total AGB. In all cases, RMSE Z values less than 0.23 m were obtained for the DTMDSM coupling. Biomass field data confirmed the goodness of fit of the yieldbiomass estimation (R2=0,88 and 1,12 kg/ha) mainly in plots with uniform vegetation coverage. Furthermore, the method was demonstrated to be scalable to multiple platform types and sensorsThis work was supported by the life project “Operation CO2: Integrated Agroforestry Practices and Nature Conservation Against Climate Change - LIFE+ 11 ENV/ES/535” and by Xunta de Galicia under the grant “Financial aid for the consolidation and structure of competitive units of investigation in the universities of the University Galician System (2016-18)” Ref. ED431B 2016/030 and Ref. ED341D R2016/023.S

Terrestrial laser scanning for vegetation analyses with a special focus on savannas

Savannas are heterogeneous ecosystems, composed of varied spatial combinations and proportions of woody and herbaceous vegetation. Most field-based inventory and remote sensing methods fail to account for the lower stratum vegetation (i.e., shrubs and grasses), and are thus underrepresenting the carbon storage potential of savanna ecosystems. For detailed analyses at the local scale, Terrestrial Laser Scanning (TLS) has proven to be a promising remote sensing technology over the past decade. Accordingly, several review articles already exist on the use of TLS for characterizing 3D vegetation structure. However, a gap exists on the spatial concentrations of TLS studies according to biome for accurate vegetation structure estimation. A comprehensive review was conducted through a meta-analysis of 113 relevant research articles using 18 attributes. The review covered a range of aspects, including the global distribution of TLS studies, parameters retrieved from TLS point clouds and retrieval methods. The review also examined the relationship between the TLS retrieval method and the overall accuracy in parameter extraction. To date, TLS has mainly been used to characterize vegetation in temperate, boreal/taiga and tropical forests, with only little emphasis on savannas. TLS studies in the savanna focused on the extraction of very few vegetation parameters (e.g., DBH and height) and did not consider the shrub contribution to the overall Above Ground Biomass (AGB). Future work should therefore focus on developing new and adjusting existing algorithms for vegetation parameter extraction in the savanna biome, improving predictive AGB models through 3D reconstructions of savanna trees and shrubs as well as quantifying AGB change through the application of multi-temporal TLS. The integration of data from various sources and platforms e.g., TLS with airborne LiDAR is recommended for improved vegetation parameter extraction (including AGB) at larger spatial scales. The review highlights the huge potential of TLS for accurate savanna vegetation extraction by discussing TLS opportunities, challenges and potential future research in the savanna biome