Application of AI in Chemical Engineering

A major shortcoming of traditional strategies is the fact that solving chemical engineering problems due to the highly nonlinear behavior of chemical processes is often impossible or very difficult. Today, artificial intelligence (AI) techniques are becoming useful due to simple implementation, easy designing, generality, robustness and flexibility. The AI includes various branches, namely, artificial neural network, fuzzy logic, genetic algorithm, expert systems and hybrid systems. They have been widely used in various applications of the chemical engineering field including modeling, process control, classification, fault detection and diagnosis. In this chapter, the capabilities of AI are investigated in various chemical engineering fields

Modelling evolution on design-by-contract predicts an origin of Life through an abiotic double-stranded RNA world

BACKGROUND: It is generally believed that life first evolved from single-stranded RNA (ssRNA) that both stored genetic information and catalyzed the reactions required for self-replication. PRESENTATION OF THE HYPOTHESIS: By modeling early genome evolution on the engineering paradigm design-by-contract, an alternative scenario is presented in which life started with the appearance of double-stranded RNA (dsRNA) as an informational storage molecule while catalytic single-stranded RNA was derived from this dsRNA template later in evolution. TESTING THE HYPOTHESIS: It was investigated whether this scenario could be implemented mechanistically by starting with abiotic processes. Double-stranded RNA could be formed abiotically by hybridization of oligoribonucleotides that are subsequently non-enzymatically ligated into a double-stranded chain. Thermal cycling driven by the diurnal temperature cycles could then replicate this dsRNA when strands of dsRNA separate and later rehybridize and ligate to reform dsRNA. A temperature-dependent partial replication of specific regions of dsRNA could produce the first template-based generation of catalytic ssRNA, similar to the developmental gene transcription process. Replacement of these abiotic processes by enzymatic processes would guarantee functional continuity. Further transition from a dsRNA to a dsDNA world could be based on minor mutations in template and substrate recognition sites of an RNA polymerase and would leave all existing processes intact. IMPLICATIONS OF THE HYPOTHESIS: Modeling evolution on a design pattern, the 'dsRNA first' hypothesis can provide an alternative mechanistic evolutionary scenario for the origin of our genome that preserves functional continuity. REVIEWERS: This article was reviewed by Anthony Poole, Eugene Koonin and Eugene Shakhnovic

Optimization of polymer processing: a review (Part I - Extrusion)

Given the global economic and societal importance of the polymer industry, the continuous search for improvements in the various processing techniques is of practical primordial importance. This review evaluates the application of optimization methodologies to the main polymer processing operations. The most important characteristics related to the usage of optimization techniques, such as the nature of the objective function, the type of optimization algorithm, the modelling approach used to evaluate the solutions, and the parameters to optimize, are discussed. The aim is to identify the most important features of an optimization system for polymer processing problems and define the best procedure for each particular practical situation. For this purpose, the state of the art of the optimization methodologies usually employed is first presented, followed by an extensive review of the literature dealing with the major processing techniques, the discussion being completed by considering both the characteristics identified and the available optimization methodologies. This first part of the review focuses on extrusion, namely single and twin-screw extruders, extrusion dies, and calibrators. It is concluded that there is a set of methodologies that can be confidently applied in polymer processing with a very good performance and without the need of demanding computation requirements.This research was funded by NAWA-Narodowa Agencja Wymiany Akademickiej, under grant PPN/ULM/2020/1/00125 and European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No 734205–H2020-MSCA-RISE-2016. The authors also acknowledge the funding by FEDER funds through the COMPETE 2020 Programme and National Funds through FCT (Portuguese Foundation for Science and Technology) under the projects UID-B/05256/2020, UID-P/05256/2020

Factories of the Future

Engineering; Industrial engineering; Production engineerin

Constraint handling strategies in Genetic Algorithms application to optimal batch plant design

Optimal batch plant design is a recurrent issue in Process Engineering, which can be formulated as a Mixed Integer Non-Linear Programming(MINLP) optimisation problem involving specific constraints, which can be, typically, the respect of a time horizon for the synthesis of various products. Genetic Algorithms constitute a common option for the solution of these problems, but their basic operating mode is not always wellsuited to any kind of constraint treatment: if those cannot be integrated in variable encoding or accounted for through adapted genetic operators, their handling turns to be a thorny issue. The point of this study is thus to test a few constraint handling techniques on a mid-size example in order to determine which one is the best fitted, in the framework of one particular problem formulation. The investigated methods are the elimination of infeasible individuals, the use of a penalty term added in the minimized criterion, the relaxation of the discrete variables upper bounds, dominancebased tournaments and, finally, a multiobjective strategy. The numerical computations, analysed in terms of result quality and of computational time, show the superiority of elimination technique for the former criterion only when the latter one does not become a bottleneck. Besides, when the problem complexity makes the random location of feasible space too difficult, a single tournament technique proves to be the most efficient one

Applications of Monte Carlo Methods in Biology, Medicine and Other Fields of Science

This volume is an eclectic mix of applications of Monte Carlo methods in many fields of research should not be surprising, because of the ubiquitous use of these methods in many fields of human endeavor. In an attempt to focus attention on a manageable set of applications, the main thrust of this book is to emphasize applications of Monte Carlo simulation methods in biology and medicine

Integrated batch process development based on mixed-logic dynamic optimization

Specialty chemicals industry relies on batch manufacturing, since it requires the frequent adaptation of production systems to market fluctuations. To be first in the market, batch industry requires decision-support systems for the rapid development and implementation of chemical processes. Moreover, the processes should be competitive to ensure their long-term viability. General-purpose and flexible plants and the consideration of physicochemical insights to define an efficient operation are also cornerstones for the success of specialty chemical industries. Precisely, this thesis tackles the systematic development of batch processes that are efficient, economically competitive, and environmentally friendly, to assist their agile introduction into production systems in grassroots and retrofit scenarios. Synthesis of conceptual processing schemes and plant allocation subproblems are solved simultaneously, taking into account the plant design. With this purpose, an optimization-based approach is proposed, where all structural alternatives are represented in a State-Equipment Network (SEN) superstructure, following formulated into a Mixed-Logic Dynamic Optimization (MLDO) problem which is later solved to minimize an objective function. Essentially, the strength of the proposed methodology lies in the modeling strategy which combines the different kinds of decisions of the integrated problem in a unique optimization model. Accordingly, it considers: (i) synthesis and allocation alternatives combination, (ii) dynamic process performance models and dynamic control variable profiles, (iii) discrete events associated to transitions of batch phases and operations, (iv) quantitative and qualitative information, (v) material transference synchronization to ensure batch integrity between unit procedures, and (vi) batch and semicontinuous processing elements. Different strategies can be used to solve the resulting MLDO problem. A deterministic direct-simultaneous approach is first proposed. The mixed-logic problem is reformulated into a mixed-integer one, which is fully-discretized to provide a Mixed-Integer Non-Linear Programming (MINLP) that is optimized using conventional solvers. Then, a Differential Genetic Algorithm (DGA) and a hybrid approach are presented. The purpose of these evolutionary strategies is to pose solution alternatives that keep solution goodness while seek for the improvement of computational efficiency to handle industrial-size problems. The optimization-based approach is applied in retrofit scenarios to solve the simultaneous process synthesis and plant allocation, taking into account the physical restrictions of existing plant elements. The production of specialty chemicals based on a competitive reactions system in an existing reactor network is first defined through process development and improvement according to different economic scenarios, decision criteria, and plant modifications. Additionally, a photo-Fenton process is optimized to eliminate an emergent wastewater pollutant in a given pilot plant, pursuing the minimization of processing time and cost. Batch process development in grassroots scenarios is also proven to be a problem of utmost importance to deal with uncertainty in future markets. Seeking for plant flexibility in several demand scenarios, the expected profit is maximized through a two-stage stochastic formulation that includes simultaneous plant design, process synthesis, and plant allocation decisions. A heuristic solution algorithm is used to handle the problem complexity. A grassroots plant design is defined to implement the previous competitive reaction system, where decisions like the feed-forward trajectories or operating modes allow the adaptation of master recipes to different demands. Finally, an acrylic fiber production example is presented to illustrate process development decisions like the selection of tasks, technological alternatives, chemicals, and solvent reuse.La indústria de productes químics especials es basa en la fabricació discontinua, ja que permet adaptar de forma freqüent els sistemes de producció en funció de les fluctuacions de mercat. Per ser líder al sector, són necessàries eines de suport a la decisió que ajudin a l’àgil desenvolupament i implementació de nous processos. A més, aquests han de ser competitius per garantir la seva viabilitat a llarg termini. Altres peces clau per una operació eficient són l’ús de plantes flexibles així com l’estudi dels fenòmens fisicoquímics. Aquesta tesis aborda justament el desenvolupament sistemàtic de processos químics discontinus que siguin eficients, econòmicament competitius i ecològics, per contribuir a la seva ràpida introducció en els sistemes de producció, tant en escenaris de plantes existents com des de les bases. En concret, es planteja la resolució simultània de la síntesi conceptual d’esquemes de procés i l’assignació d’equips, tenint en compte el disseny de la planta. Amb aquest objectiu, es proposa una metodologia de solució basada en optimització, on les alternatives estructurals es representen en una Xarxa d’Estats i Equips (SEN per les sigles en anglès) que es formula mitjançant un problema d’Optimització Dinàmica Mixta-Lògica (MLDO per les sigles en anglès) que es resol minimitzant una funció objectiu. La solidesa de la metodologia proposada rau en la estratègia de modelat del problema MLDO, que integra els diferents tipus de decisions en un sol model d’optimització. En concret, es consideren: (i) la combinació d’alternatives de síntesi i assignació d’equips, (ii) models de procés i trajectòries de control dinàmics, (iii) esdeveniments discrets associats al canvi de fase i operació, (iv) informació quantitativa i qualitativa, (v) sincronització de transferències de material en tasques consecutives, i (vi) elements de processat discontinus i semi-continus. Existeixen diverses estratègies per resoldre el problema MLDO resultant. En aquesta tesi es proposa en primer lloc un mètode determinístic directe-simultani, on el model mixt-lògic es transforma en un mixt-enter. Aquest es discretitza al seu torn de forma completa per obtenir un problema de Programació No-Lineal Mixta-Entera (MINLP per les sigles en anglès) el qual es pot resoldre utilitzant algoritmes d’optimització convencionals. A més, es presenten un Algoritme Genètic Diferencial (DGA per les sigles en anglès) i un mètode híbrid. Totes dues estratègies esdevenen alternatives de cerca amb l’objectiu de mantenir la bondat de la solució i millorar l’eficàcia de computació per tractar problemes de dimensió industrial. La metodologia de solució proposada s’aplica al desenvolupament de processos discontinus en escenaris de plantes existents, tenint en compte les restriccions físiques dels equips. Un primer exemple aborda la manufactura de productes químics basada en un sistema de reaccions competitives. Concretament, es desenvolupa i millora el procés de producció implementat en una xarxa de reactors considerant diferents escenaris econòmics, criteris de decisió, i modificacions de planta. En un segon exemple, s’optimitza el procés foto-Fenton per ser executat en una planta pilot per eliminar contaminants emergents. Buscant integrar el desenvolupament de procés i el disseny de plantes flexibles en escenaris de base, es presenta una formulació estocàstica en dues etapes per a optimitzar el benefici esperat d’acord a diversos escenaris de demanda. Per gestionar la complexitat d’aquest problema es proposa la utilització d’una heurística. Com a exemple, es planteja el disseny d’una planta de base on implementar l’anterior sistema de reaccions competitives. Decisions com les trajectòries dinàmiques de control o la configuració d’equips permeten adaptar la recepta màster en funció de la demanda. Un darrer exemple defineix el procés de producció de fibra acrílica, il·lustrant decisions com la selecció de tasques, tecnologia, reactius o reutilització de dissolvents.La industria productos químicos especiales se basa en la fabricación discontinua, la cual permite la adaptación frecuente de los sistemas de producción en función de las fluctuaciones de mercado. Para ser líder en el sector, son necesarias herramientas de soporte a la decisión que contribuyan al ágil desarrollo e implementación de nuevos procesos. Además, éstos deben ser competitivos para garantizar su viabilidad a largo plazo. Otras piezas clave para una operación eficiente son la utilización de plantas flexibles y el estudio de los fenómenos fisicoquímicos. Esta tesis aborda justamente el desarrollo sistemático de procesos químicos discontinuos que sean eficientes, económicamente competitivos y ecológicos, para contribuir a su rápida introducción en los sistemas de producción, ya sea en escenarios de plantas existentes o desde las bases. En particular, se plantea la resoluciónsimultánea de la síntesis conceptual de esquemas de proceso y la asignación de equipos, teniendo en cuenta además el diseño de planta.Con este fin, se propone una metodología de solución basada en optimización, donde todas las alternativas estructurales se representan en una Red de Estados y Equipos (SENpor sus siglas en inglés) que se formula mediante un problema de Optimización Dinámica Mixta-Lógica (MLDO por sus siglas en inglés) que se resuelve minimizando una función objetivo. La solidez de la metodología propuesta reside en la estrategia de modelado delproblema MLDO, que integra los diferentes tipos de decisiones en un solo modelo de optimización. En concreto, se consideran: (i) la combinación de alternativas de síntesis y asignación de equipos, (ii) modelos de proceso y trayectorias de control dinámicos, (iii)eventos discretos asociados al cambio de fase y operación, (iv) información cuantitativa y cualitativa, (v) sincronización de la transferencia de material en tareas consecutivas, y(vi) elementos de procesado discontinuos y semicontinuos.Existen diversas estrategias para resolver el problema MLDO resultante. En esta tesis se propone en primer lugar un método determinístico directo-simultáneo, donde el problema mixto-lógico se reformula en un mixto-entero. A su vez, éste se discretiza de formacompleta para obtener un problema de Programación No-Lineal Mixta-Entera (MINLP por sus siglas en inglés) el cual se puede resolver mediante algoritmos de optimización convencionales. Además, se presentan un Algoritmo Genético Diferencial (DGA por sussiglas en inglés) y un método híbrido. Ambas estrategias se plantean como alternativas de búsqueda con objeto de mantener la bondad de la solución y mejorar la eficacia de computación para tratar problemas de dimensión industrial.La metodología de solución propuesta se aplica al desarrollo de procesos discontinuos en escenarios con plantas existentes, teniendo en cuenta las restricciones físicas de los equipos. Un primer ejemplo aborda la fabricación de productos químicos basada en un sistema de reacciones competitivas. En concreto, se desarrolla y mejora el proceso de producción a implementar en una red de reactores considerando diferentes escenarios económicos, criterios de decisión, y modificaciones de planta. En un segundo ejemplo,se optimiza el proceso foto-Fenton a ser ejecutado en una planta piloto para eliminar contaminantes emergentes.Persiguiendo la integración del desarrollo de proceso con el diseño de plantas flexi-bles en escenarios base, se presenta asimismo una formulación estocástica en dos etapas para optimizar el beneficio esperado de acuerdo a varios escenarios de demanda. Paramanejar la complejidad de dicho problema se propone la utilización de una heurística.Como ejemplo, se plantea el diseño de una planta de base para implementar el anterior sistema de reacciones competitivas, donde decisiones como las trayectorias dinámicas de control o la configuración de equipos permiten adaptar la receta máster en función de lademandas. Por último, se presenta un ejemplo donde se define el proceso de producción de fibra acrílica, ilustrando decisiones como la selección de tareas, alternativas tecnológicas, reactivos químicos o la reutilización de disolventes.Postprint (published version

Vapour polishing of fused deposition modelling (FDM) parts: a critical review of different techniques, and subsequent surface finish and mechanical properties of the post-processed 3D-printed parts

Fused deposition modelling (FDM), one of the most commonly used additive manufacturing techniques in the industry, involves layer-by-layer deposition of melted material to create a 3D structure. The staircase and beading effect caused by the printing process and temperature variation cause delamination and poor surface finish in FDM-printed parts. This hinders the use of these specimens in various applications, which are then usually resolved using pre-processing and post-processing techniques. Higher surface finish in pre-processing is achieved by increasing the resolution, changing layer thickness and optimizing build orientation. However, this increases the processing time considerably. On the other hand, post-processing techniques involve different processes such as mechanical, chemical, thermal and hybrid methods but can affect the mechanical and structural properties of the printed components. This review paper analyses three different aspects in the area of improving the surface finish of FDM-printed parts. First, this article reviews the state-of-the-art attempts made to improve the surface finish of FDM-printed parts concentrated mainly on different vapour polishing techniques and their respective merits and demerits. Second, it focuses on the changes in mechanical properties before and after polishing. Finally, the paper explores the development in the 3D printing of thermosets and composite materials and their post-processing processes and process parameters

Quantum computing algorithms: getting closer to critical problems in computational biology

The recent biotechnological progress has allowed life scientists and physicians to access an unprecedented, massive amount of data at all levels (molecular, supramolecular, cellular and so on) of biological complexity. So far, mostly classical computational efforts have been dedicated to the simulation, prediction or de novo design of biomolecules, in order to improve the understanding of their function or to develop novel therapeutics. At a higher level of complexity, the progress of omics disciplines (genomics, transcriptomics, proteomics and metabolomics) has prompted researchers to develop informatics means to describe and annotate new biomolecules identified with a resolution down to the single cell, but also with a high-throughput speed. Machine learning approaches have been implemented to both the modelling studies and the handling of biomedical data. Quantum computing (QC) approaches hold the promise to resolve, speed up or refine the analysis of a wide range of these computational problems. Here, we review and comment on recently developed QC algorithms for biocomputing, with a particular focus on multi-scale modelling and genomic analyses. Indeed, differently from other computational approaches such as protein structure prediction, these problems have been shown to be adequately mapped onto quantum architectures, the main limit for their immediate use being the number of qubits and decoherence effects in the available quantum machines. Possible advantages over the classical counterparts are highlighted, along with a description of some hybrid classical/quantum approaches, which could be the closest to be realistically applied in biocomputation

Predictive and experimental approaches for elucidating protein–protein interactions and quaternary structures

The elucidation of protein–protein interactions is vital for determining the function and action of quaternary protein structures. Here, we discuss the difficulty and importance of establishing protein quaternary structure and review in vitro and in silico methods for doing so. Determining the interacting partner proteins of predicted protein structures is very time-consuming when using in vitro methods, this can be somewhat alleviated by use of predictive methods. However, developing reliably accurate predictive tools has proved to be difficult. We review the current state of the art in predictive protein interaction software and discuss the problem of scoring and therefore ranking predictions. Current community-based predictive exercises are discussed in relation to the growth of protein interaction prediction as an area within these exercises. We suggest a fusion of experimental and predictive methods that make use of sparse experimental data to determine higher resolution predicted protein interactions as being necessary to drive forward development