Locality and Structure Regularized Low Rank Representation for Hyperspectral Image Classification

Hyperspectral image (HSI) classification, which aims to assign an accurate label for hyperspectral pixels, has drawn great interest in recent years. Although low rank representation (LRR) has been used to classify HSI, its ability to segment each class from the whole HSI data has not been exploited fully yet. LRR has a good capacity to capture the underlying lowdimensional subspaces embedded in original data. However, there are still two drawbacks for LRR. First, LRR does not consider the local geometric structure within data, which makes the local correlation among neighboring data easily ignored. Second, the representation obtained by solving LRR is not discriminative enough to separate different data. In this paper, a novel locality and structure regularized low rank representation (LSLRR) model is proposed for HSI classification. To overcome the above limitations, we present locality constraint criterion (LCC) and structure preserving strategy (SPS) to improve the classical LRR. Specifically, we introduce a new distance metric, which combines both spatial and spectral features, to explore the local similarity of pixels. Thus, the global and local structures of HSI data can be exploited sufficiently. Besides, we propose a structure constraint to make the representation have a near block-diagonal structure. This helps to determine the final classification labels directly. Extensive experiments have been conducted on three popular HSI datasets. And the experimental results demonstrate that the proposed LSLRR outperforms other state-of-the-art methods.Comment: 14 pages, 7 figures, TGRS201

Joint sparse model-based discriminative K-SVD for hyperspectral image classification

Sparse representation classification (SRC) is being widely investigated on hyperspectral images (HSI). For SRC methods to achieve high classification performance, not only is the development of sparse representation models essential, the designing and learning of quality dictionaries also plays an important role. That is, a redundant dictionary with well-designated atoms is required in order to ensure low reconstruction error, high discriminative power, and stable sparsity. In this paper, we propose a new method to learn such dictionaries for HSI classification. We borrow the concept of joint sparse model (JSM) from SRC to dictionary learning. JSM assumes local smoothness and joint sparsity and was initially proposed for classification of HSI. We leverage JSM to develop an extension of discriminative K-SVD for learning a promising discriminative dictionary for HSI. Through a semi-supervised strategy, the new dictionary learning method, termed JSM-DKSVD, utilises all spectrums over the local neighbourhoods of labelled training pixels for discriminative dictionary learning. It can produce a redundant dictionary with rich spectral and spatial information as well as high discriminative power. The learned dictionary can then be compatibly used in conjunction with the established SRC methods, and can significantly improve their performance for HSI classification

Essays on hyperspectral image analysis: classification and target detection

Over the past a few decades, hyperspectral imaging has drawn significant attention and become an important scientific tool for various fields of real-world applications. Among the research topics of hyperspectral image (HSI) analysis, two major topics -- HSI classification and HSI target detection have been intensively studied. Statistical learning has played a pivotal role in promoting the development of algorithms and methodologies for the two topics. Among the existing methods for HSI classification, sparse representation classification (SRC) has been widely investigated, which is based on the assumption that a signal can be represented by a linear combination of a small number of redundant bases (so called dictionary atoms). By virtue of the signal coherence in HSIs, a joint sparse model (JSM) has been successfully developed for HSI classification and has achieved promising performance. However, the JSM-based dictionary learning for HSIs is barely discussed. In addition, the non-negativity properties of coefficients in the JSM are also little touched. HSI target detection can be regarded as a special case of classification, i.e. a binary classification, but faces more challenges. Traditional statistical methods regard a test HSI pixel as a linear combination of several endmembers with corresponding fractions, i.e. based on the linear mixing model (LMM). However, due to the complicated environments in real-world problems, complex mixing effects may exist in HSIs and make the detection of targets more difficult. As a consequence, the performance of traditional LMM is limited. In this thesis, we focus on the topics of HSI classification and HSI target detection and propose five new methods to tackle the aforementioned issues in the two tasks. For the HSI classification, two new methods are proposed based on the JSM. The first proposed method focuses on the dictionary learning, which incorporates the JSM in the discriminative K-SVD learning algorithm, in order to learn a quality dictionary with rich information for improving the classification performance. The second proposed method focuses on developing the convex cone-based JSM, i.e. by incorporating the non-negativity constraints in the coefficients in the JSM. For the HSI target detection, three approaches are proposed based on the linear mixing model (LMM). The first approach takes account of interaction effects to tackle the mixing problems in HSI target detection. The second approach called matched shrunken subspace detector (MSSD) and the third approach, called matched cone shrunken detector (MSCD), both offer on Bayesian derivatives of regularisation constrained LMM. Specifically, the proposed MSSD is a regularised subspace-representation of LMM, while the proposed MSCD is a regularised cone-representation of LMM

A multi-granularity locally optimal prototype-based approach for classification

Prototype-based approaches generally provide better explainability and are widely used for classification. However, the majority of them suffer from system obesity and lack transparency on complex problems. In this paper, a novel classification approach with a multi-layered system structure self-organized from data is proposed. This approach is able to identify local peaks of multi-modal density derived from static data and filter out more representative ones at multiple levels of granularity acting as prototypes. These prototypes are then optimized to their locally optimal positions in the data space and arranged in layers with meaningful dense links in-between to form pyramidal hierarchies based on the respective levels of granularity accordingly. After being primed offline, the constructed classification model is capable of self-developing continuously from streaming data to self-expend its knowledge base. The proposed approach offers higher transparency and is convenient for visualization thanks to the hierarchical nested architecture. Its system identification process is objective, data-driven and free from prior assumptions on data generation model with user- and problem- specific parameters. Its decision-making process follows the “nearest prototype” principle, and is highly explainable and traceable. Numerical examples on a wide range of benchmark problems demonstrate its high performance

Deep Learning Detected Nutrient Deficiency in Chili Plant

Chili is a staple commodity that also affects the Indonesian economy due to high market demand. Proven in June 2019, chili is a contributor to Indonesia's inflation of 0.20% from 0.55%. One factor is crop failure due to malnutrition. In this study, the aim is to explore Deep Learning Technology in agriculture to help farmers be able to diagnose their plants, so that their plants are not malnourished. Using the RCNN algorithm as the architecture of this system. Use 270 datasets in 4 categories. The dataset used is primary data with chili samples in Boyolali Regency, Indonesia. The chili we use are curly chili. The results of this study are computers that can recognize nutrient deficiencies in chili plants based on image input received with the greatest testing accuracy of 82.61% and has the best mAP value of 15.57%

Personality Identification from Social Media Using Deep Learning: A Review

Social media helps in sharing of ideas and information among people scattered around the world and thus helps in creating communities, groups, and virtual networks. Identification of personality is significant in many types of applications such as in detecting the mental state or character of a person, predicting job satisfaction, professional and personal relationship success, in recommendation systems. Personality is also an important factor to determine individual variation in thoughts, feelings, and conduct systems. According to the survey of Global social media research in 2018, approximately 3.196 billion social media users are in worldwide. The numbers are estimated to grow rapidly further with the use of mobile smart devices and advancement in technology. Support vector machine (SVM), Naive Bayes (NB), Multilayer perceptron neural network, and convolutional neural network (CNN) are some of the machine learning techniques used for personality identification in the literature review. This paper presents various studies conducted in identifying the personality of social media users with the help of machine learning approaches and the recent studies that targeted to predict the personality of online social media (OSM) users are reviewed

Intelligent Biosignal Processing in Wearable and Implantable Sensors

This reprint provides a collection of papers illustrating the state-of-the-art of smart processing of data coming from wearable, implantable or portable sensors. Each paper presents the design, databases used, methodological background, obtained results, and their interpretation for biomedical applications. Revealing examples are brain–machine interfaces for medical rehabilitation, the evaluation of sympathetic nerve activity, a novel automated diagnostic tool based on ECG data to diagnose COVID-19, machine learning-based hypertension risk assessment by means of photoplethysmography and electrocardiography signals, Parkinsonian gait assessment using machine learning tools, thorough analysis of compressive sensing of ECG signals, development of a nanotechnology application for decoding vagus-nerve activity, detection of liver dysfunction using a wearable electronic nose system, prosthetic hand control using surface electromyography, epileptic seizure detection using a CNN, and premature ventricular contraction detection using deep metric learning. Thus, this reprint presents significant clinical applications as well as valuable new research issues, providing current illustrations of this new field of research by addressing the promises, challenges, and hurdles associated with the synergy of biosignal processing and AI through 16 different pertinent studies. Covering a wide range of research and application areas, this book is an excellent resource for researchers, physicians, academics, and PhD or master students working on (bio)signal and image processing, AI, biomaterials, biomechanics, and biotechnology with applications in medicine

Deep Learning in Medical Image Analysis

The accelerating power of deep learning in diagnosing diseases will empower physicians and speed up decision making in clinical environments. Applications of modern medical instruments and digitalization of medical care have generated enormous amounts of medical images in recent years. In this big data arena, new deep learning methods and computational models for efficient data processing, analysis, and modeling of the generated data are crucially important for clinical applications and understanding the underlying biological process. This book presents and highlights novel algorithms, architectures, techniques, and applications of deep learning for medical image analysis

Efficient feature reduction and classification methods

Durch die steigende Anzahl verfügbarer Daten in unterschiedlichsten Anwendungsgebieten nimmt der Aufwand vieler Data-Mining Applikationen signifikant zu. Speziell hochdimensionierte Daten (Daten die über viele verschiedene Attribute beschrieben werden) können ein großes Problem für viele Data-Mining Anwendungen darstellen. Neben höheren Laufzeiten können dadurch sowohl für überwachte (supervised), als auch nicht überwachte (unsupervised) Klassifikationsalgorithmen weitere Komplikationen entstehen (z.B. ungenaue Klassifikationsgenauigkeit, schlechte Clustering-Eigenschaften, …). Dies führt zu einem Bedarf an effektiven und effizienten Methoden zur Dimensionsreduzierung. Feature Selection (die Auswahl eines Subsets von Originalattributen) und Dimensionality Reduction (Transformation von Originalattribute in (Linear)-Kombinationen der Originalattribute) sind zwei wichtige Methoden um die Dimension von Daten zu reduzieren. Obwohl sich in den letzten Jahren vielen Studien mit diesen Methoden beschäftigt haben, gibt es immer noch viele offene Fragestellungen in diesem Forschungsgebiet. Darüber hinaus ergeben sich in vielen Anwendungsbereichen durch die immer weiter steigende Anzahl an verfügbaren und verwendeten Attributen und Features laufend neue Probleme. Das Ziel dieser Dissertation ist es, verschiedene Fragenstellungen in diesem Bereich genau zu analysieren und Verbesserungsmöglichkeiten zu entwickeln. Grundsätzlich, werden folgende Ansprüche an Methoden zur Feature Selection und Dimensionality Reduction gestellt: Die Methoden sollten effizient (bezüglich ihres Rechenaufwandes) sein und die resultierenden Feature-Sets sollten die Originaldaten möglichst kompakt repräsentieren können. Darüber hinaus ist es in vielen Anwendungsgebieten wichtig, die Interpretierbarkeit der Originaldaten beizubehalten. Letztendlich sollte der Prozess der Dimensionsreduzierung keinen negativen Effekt auf die Klassifikationsgenauigkeit haben - sondern idealerweise, diese noch verbessern. Offene Problemstellungen in diesem Bereich betreffen unter anderem den Zusammenhang zwischen Methoden zur Dimensionsreduzierung und der resultierenden Klassifikationsgenauigkeit, wobei sowohl eine möglichst kompakte Repräsentation der Daten, als auch eine hohe Klassifikationsgenauigkeit erzielt werden sollen. Wie bereits erwähnt, ergibt sich durch die große Anzahl an Daten auch ein erhöhter Rechenaufwand, weshalb schnelle und effektive Methoden zur Dimensionsreduzierung entwickelt werden müssen, bzw. existierende Methoden verbessert werden müssen. Darüber hinaus sollte natürlich auch der Rechenaufwand der verwendeten Klassifikationsmethoden möglichst gering sein. Des Weiteren ist die Interpretierbarkeit von Feature Sets zwar möglich, wenn Feature Selection Methoden für die Dimensionsreduzierung verwendet werden, im Fall von Dimensionality Reduction sind die resultierenden Feature Sets jedoch meist Linearkombinationen der Originalfeatures. Daher ist es schwierig zu überprüfen, wie viel Information einzelne Originalfeatures beitragen. Im Rahmen dieser Dissertation konnten wichtige Beiträge zu den oben genannten Problemstellungen präsentiert werden: Es wurden neue, effiziente Initialisierungsvarianten für die Dimensionality Reduction Methode Nonnegative Matrix Factorization (NMF) entwickelt, welche im Vergleich zu randomisierter Initialisierung und im Vergleich zu State-of-the-Art Initialisierungsmethoden zu einer schnelleren Reduktion des Approximationsfehlers führen. Diese Initialisierungsvarianten können darüber hinaus mit neu entwickelten und sehr effektiven Klassifikationsalgorithmen basierend auf NMF kombiniert werden. Um die Laufzeit von NMF weiter zu steigern wurden unterschiedliche Varianten von NMF Algorithmen auf Multi-Prozessor Systemen vorgestellt, welche sowohl Task- als auch Datenparallelismus unterstützen und zu einer erheblichen Reduktion der Laufzeit für NMF führen. Außerdem wurde eine effektive Verbesserung der Matlab Implementierung des ALS Algorithmus vorgestellt. Darüber hinaus wurde eine Technik aus dem Bereich des Information Retrieval -- Latent Semantic Indexing -- erfolgreich als Klassifikationsalgorithmus für Email Daten angewendet. Schließlich wurde eine ausführliche empirische Studie über den Zusammenhang verschiedener Feature Reduction Methoden (Feature Selection und Dimensionality Reduction) und der resultierenden Klassifikationsgenauigkeit unterschiedlicher Lernalgorithmen präsentiert. Der starke Einfluss unterschiedlicher Methoden zur Dimensionsreduzierung auf die resultierende Klassifikationsgenauigkeit unterstreicht dass noch weitere Untersuchungen notwendig sind um das komplexe Zusammenspiel von Dimensionsreduzierung und Klassifikation genau analysieren zu können.The sheer volume of data today and its expected growth over the next years are some of the key challenges in data mining and knowledge discovery applications. Besides the huge number of data samples that are collected and processed, the high dimensional nature of data arising in many applications causes the need to develop effective and efficient techniques that are able to deal with this massive amount of data. In addition to the significant increase in the demand of computational resources, those large datasets might also influence the quality of several data mining applications (especially if the number of features is very high compared to the number of samples). As the dimensionality of data increases, many types of data analysis and classification problems become significantly harder. This can lead to problems for both supervised and unsupervised learning. Dimensionality reduction and feature (subset) selection methods are two types of techniques for reducing the attribute space. While in feature selection a subset of the original attributes is extracted, dimensionality reduction in general produces linear combinations of the original attribute set. In both approaches, the goal is to select a low dimensional subset of the attribute space that covers most of the information of the original data. During the last years, feature selection and dimensionality reduction techniques have become a real prerequisite for data mining applications. There are several open questions in this research field, and due to the often increasing number of candidate features for various application areas (e.\,g., email filtering or drug classification/molecular modeling) new questions arise. In this thesis, we focus on some open research questions in this context, such as the relationship between feature reduction techniques and the resulting classification accuracy and the relationship between the variability captured in the linear combinations of dimensionality reduction techniques (e.\,g., PCA, SVD) and the accuracy of machine learning algorithms operating on them. Another important goal is to better understand new techniques for dimensionality reduction, such as nonnegative matrix factorization (NMF), which can be applied for finding parts-based, linear representations of nonnegative data. This ``sum-of-parts'' representation is especially useful if the interpretability of the original data should be retained. Moreover, performance aspects of feature reduction algorithms are investigated. As data grow, implementations of feature selection and dimensionality reduction techniques for high-performance parallel and distributed computing environments become more and more important. In this thesis, we focus on two types of open research questions: methodological advances without any specific application context, and application-driven advances for a specific application context. Summarizing, new methodological contributions are the following: The utilization of nonnegative matrix factorization in the context of classification methods is investigated. In particular, it is of interest how the improved interpretability of NMF factors due to the non-negativity constraints (which is of central importance in various problem settings) can be exploited. Motivated by this problem context two new fast initialization techniques for NMF based on feature selection are introduced. It is shown how approximation accuracy can be increased and/or how computational effort can be reduced compared to standard randomized seeding of the NMF and to state-of-the-art initialization strategies suggested earlier. For example, for a given number of iterations and a required approximation error a speedup of 3.6 compared to standard initialization, and a speedup of 3.4 compared to state-of-the-art initialization strategies could be achieved. Beyond that, novel classification methods based on the NMF are proposed and investigated. We can show that they are not only competitive in terms of classification accuracy with state-of-the-art classifiers, but also provide important advantages in terms of computational effort (especially for low-rank approximations). Moreover, parallelization and distributed execution of NMF is investigated. Several algorithmic variants for efficiently computing NMF on multi-core systems are studied and compared to each other. In particular, several approaches for exploiting task and/or data-parallelism in NMF are studied. We show that for some scenarios new algorithmic variants clearly outperform existing implementations. Last, but not least, a computationally very efficient adaptation of the implementation of the ALS algorithm in Matlab 2009a is investigated. This variant reduces the runtime significantly (in some settings by a factor of 8) and also provides several possibilities to be executed concurrently. In addition to purely methodological questions, we also address questions arising in the adaptation of feature selection and classification methods to two specific application problems: email classification and in silico screening for drug discovery. Different research challenges arise in the contexts of these different application areas, such as the dynamic nature of data for email classification problems, or the imbalance in the number of available samples of different classes for drug discovery problems. Application-driven advances of this thesis comprise the adaptation and application of latent semantic indexing (LSI) to the task of email filtering. Experimental results show that LSI achieves significantly better classification results than the widespread de-facto standard method for this special application context. In the context of drug discovery problems, several groups of well discriminating descriptors could be identified by utilizing the ``sum-of-parts`` representation of NMF. The number of important descriptors could be further increased when applying sparseness constraints on the NMF factors