Introduction of a combination vector to optimise the interpolation of numerical phantoms

International audiencePhantoms are 3-dimensional (3D) numerical representations of the contours of organs in the human body. The quality of the dosimetric reports established when accidental overexposures to radiation occur is highly dependent on the phantom's reliability with respect to the subject. EquiVox is a Case-Based Reasoning platform which proposes an interpolation of the 3D Lung Contours (3DLC) of subjects during its adaptation phase. This interpolation is conducted by an Artificial Neural Network (ANN) trained to learn how to interpolate the 3DLC of a Learning Set (LS). ANN is a well-suited tool when known results are numerous. Since the cardinality of our learning set is restrained, the imperfections of each 3DLC have a great impact on interpolations. Thus, we explored the possibility of ignoring some of the 3DLC of LS via implementation of a new learning algorithm which associated Combination Vectors (CV) to LS. The results proved that this method could optimise interpolation accuracy. Furthermore, this study highlights the fact that some of the 3DLC were harmful for some interpolations whereas they increased the accuracy of others

EQUIVOX: an example of adaptation using an artificial neural network on a case-based reasoning platform

International audienceIn case of a radiological emergency situation involving accidental human exposure, a dosimetry evaluation must be established as soon as possible. In most cases, this evaluation is based on numerical representations and models of victims. Unfortunately, personalised and realistic human representations are often unavailable for the exposed subjects. However, accuracy of treatment depends on the similarity of the phantom to the victim. The EquiVox platform (Research of Equivalent Voxel phantom) developed in this study uses Case-Based Reasoning (CBR) principles to retrieve and adapt, from among a set of existing phantoms, the one to represent the victim. This paper introduces the EquiVox platform and the Artificial Neural Network (ANN) developed to interpolate the victim's 3D lung contours. The results obtained for the choice and construction of the contours are presented and discussed

Knowledge-light adaptation approaches in case-based reasoning for radiotherapy treatment planning

Objective: Radiotherapy treatment planning aims at delivering a sufficient radiation dose to cancerous tumour cells while sparing healthy organs in the tumour-surrounding area. It is a time-consuming trial-and-error process that requires the expertise of a group of medical experts including oncologists and medical physicists and can take from 2 to 3 h to a few days. Our objective is to improve the performance of our previously built case-based reasoning (CBR) system for brain tumour radiotherapy treatment planning. In this system, a treatment plan for a new patient is retrieved from a case base containing patient cases treated in the past and their treatment plans. However, this system does not perform any adaptation, which is needed to account for any difference between the new and retrieved cases. Generally, the adaptation phase is considered to be intrinsically knowledge-intensive and domain-dependent. Therefore, an adaptation often requires a large amount of domain-specific knowledge, which can be difficult to acquire and often is not readily available. In this study, we investigate approaches to adaptation that do not require much domain knowledge, referred to as knowledge-light adaptation. Methodology: We developed two adaptation approaches: adaptation based on machine-learning tools and adaptation-guided retrieval. They were used to adapt the beam number and beam angles suggested in the retrieved case. Two machine-learning tools, neural networks and naive Bayes classifier, were used in the adaptation to learn how the difference in attribute values between the retrieved and new cases affects the output of these two cases. The adaptation-guided retrieval takes into consideration not only the similarity between the new and retrieved cases, but also how to adapt the retrieved case. Results: The research was carried out in collaboration with medical physicists at the Nottingham University Hospitals NHS Trust, City Hospital Campus, UK. All experiments were performed using real-world brain cancer patient cases treated with three-dimensional (3D)-conformal radiotherapy. Neural networks-based adaptation improved the success rate of the CBR system with no adaptation by 12%. However, naive Bayes classifier did not improve the current retrieval results as it did not consider the interplay among attributes. The adaptation-guided retrieval of the case for beam number improved the success rate of the CBR system by 29%. However, it did not demonstrate good performance for the beam angle adaptation. Its success rate was 29% versus 39% when no adaptation was performed. Conclusions: The obtained empirical results demonstrate that the proposed adaptation methods improve the performance of the existing CBR system in recommending the number of beams to use. However, we also conclude that to be effective, the proposed adaptation of beam angles requires a large number of relevant cases in the case base

Collaborative CBR-based agents in the preparation of varied training lessons

International audienceCase‐Based Reasoning (CBR) is widely used as a means of intelligent tutoring and elearning systems. Indeed, course lessons are elaborated by analogy: this kind of system produces sets of exercises with respect to student level and class objective. Nevertheless, CBR systems always result in the same solution to a given problem description, whereas teaching requires that monotony be broken in order to maintain student motivation and attention. This is particularly true for sports where trainers must propose different exercises to practice the same skills for many weeks. We designed a system based on CBR that takes into account any previous lessons offered and designs new ones so as to vary the exercises each time: this system takes into account the solutions previously proposed so as to avoid giving the same lesson twice. In addition, this system is based on collaborative agents, each taking into account the exercises proposed by others so that each activity is proposed only once during a lesson. A sports trainer tested and evaluated the ability of this system as a means to design varied aïkido training lessons and proved that our system is capable of creating classroom activities that are diverse, changing, pertinent and consistent

딥러닝 방법론을 이용한 높은 적용성을 가진 수경재배 파프리카 대상 절차 기반 모델 개발

학위논문(박사) -- 서울대학교대학원 : 농업생명과학대학 농림생물자원학부, 2022. 8. 손정익.Many agricultural challenges are entangled in a complex interaction between crops and the environment. As a simplifying tool, crop modeling is a process of abstracting and interpreting agricultural phenomena. Understanding based on this interpretation can play a role in supporting academic and social decisions in agriculture. Process-based crop models have solved the challenges for decades to enhance the productivity and quality of crop production; the remaining objectives have led to demand for crop models handling multidirectional analyses with multidimensional information. As a possible milestone to satisfy this goal, deep learning algorithms have been introduced to the complicated tasks in agriculture. However, the algorithms could not replace existing crop models because of the research fragmentation and low accessibility of the crop models. This study established a developmental protocol for a process-based crop model with deep learning methodology. Literature Review introduced deep learning and crop modeling, and it explained the reasons for the necessity of this protocol despite numerous deep learning applications for agriculture. Base studies were conducted with several greenhouse data in Chapters 1 and 2: transfer learning and U-Net structure were utilized to construct an infrastructure for the deep learning application; HyperOpt, a Bayesian optimization method, was tested to calibrate crop models to compare the existing crop models with the developed model. Finally, the process-based crop model with full deep neural networks, DeepCrop, was developed with an attention mechanism and multitask decoders for hydroponic sweet peppers (Capsicum annuum var. annuum) in Chapter 3. The methodology for data integrity showed adequate accuracy, so it was applied to the data in all chapters. HyperOpt was able to calibrate food and feed crop models for sweet peppers. Therefore, the compared models in the final chapter were optimized using HyperOpt. DeepCrop was trained to simulate several growth factors with environment data. The trained DeepCrop was evaluated with unseen data, and it showed the highest modeling efficiency (=0.76) and the lowest normalized root mean squared error (=0.18) than the compared models. With the high adaptability of DeepCrop, it can be used for studies on various scales and purposes. Since all methods adequately solved the given tasks and underlay the DeepCrop development, the established protocol can be a high throughput for enhancing accessibility of crop models, resulting in unifying crop modeling studies.농업 시스템에서 발생하는 문제들은 작물과 환경의 상호작용 하에 복잡하게 얽혀 있다. 작물 모델링은 대상을 단순화하는 방법으로써, 농업에서 일어나는 현상을 추상화하고 해석하는 과정이다. 모델링을 통해 대상을 이해하는 것은 농업 분야의 학술적 및 사회적 결정을 지원할 수 있다. 지난 수년 간 절차 기반 작물 모델은 농업의 문제들을 해결하여 작물 생산성 및 품질을 증진시켰으며, 현재 작물 모델링에 남아있는 과제들은 다차원 정보를 다방향에서 분석할 수 있는 작물 모델을 필요로 하게 되었다. 이를 만족시킬 수 있는 지침으로써, 복잡한 농업적 과제들을 목표로 딥러닝 알고리즘이 도입되었다. 그러나, 이 알고리즘들은 낮은 데이터 완결성 및 높은 연구 다양성 때문에 기존의 작물 모델들을 대체하지는 못했다. 본 연구에서는 딥러닝 방법론을 이용하여 절차 기반 작물 모델을 구축하는 개발 프로토콜을 확립하였다. Literature Review에서는 딥러닝과 작물 모델에 대해 소개하고, 농업으로의 딥러닝 적용 연구가 많음에도 이 프로토콜이 필요한 이유를 설명하였다. 제1장과 2장에서는 국내 여러 지역의 데이터를 이용하여 전이 학습 및 U-Net 구조를 활용하여 딥러닝 모델 적용을 위한 기반을 마련하고, 베이지안 최적화 방법인 HyperOpt를 사용하여 기존 모델과 딥러닝 기반 모델을 비교하기 위해 시험적으로 WOFOST 작물 모델을 보정하는 등 모델 개발을 위한 기반 연구를 수행하였다. 마지막으로, 제3장에서는 주의 메커니즘 및 다중 작업 디코더를 가진 완전 심층 신경망 절차 기반 작물 모델인 DeepCrop을 수경재배 파프리카(Capsicum annuum var. annuum) 대상으로 개발하였다. 데이터 완결성을 위한 기술들은 적합한 정확도를 보여주었으며, 전체 챕터 데이터에 적용하였다. HyperOpt는 식량 및 사료 작물 모델들을 파프리카 대상으로 보정할 수 있었다. 따라서, 제3장의 비교 대상 모델들에 대해 HyperOpt를 사용하였다. DeepCrop은 환경 데이터를 이용하고 여러 생육 지표를 예측하도록 학습되었다. 학습에 사용하지 않은 데이터를 이용하여 학습된 DeepCrop를 평가하였으며, 이 때 비교 모델들 중 가장 높은 모형 효율(EF=0.76)과 가장 낮은 표준화 평균 제곱근 오차(NRMSE=0.18)를 보여주었다. DeepCrop은 높은 적용성을 기반으로 다양한 범위와 목적을 가진 연구에 사용될 수 있을 것이다. 모든 방법들이 주어진 작업을 적절히 풀어냈고 DeepCrop 개발의 근거가 되었으므로, 본 논문에서 확립한 프로토콜은 작물 모델의 접근성을 향상시킬 수 있는 획기적인 방향을 제시하였고, 작물 모델 연구의 통합에 기여할 수 있을 것으로 기대한다.LITERATURE REVIEW 1 ABSTRACT 1 BACKGROUND 3 REMARKABLE APPLICABILITY AND ACCESSIBILITY OF DEEP LEARNING 12 DEEP LEARNING APPLICATIONS FOR CROP PRODUCTION 17 THRESHOLDS TO APPLY DEEP LEARNING TO CROP MODELS 18 NECESSITY TO PRIORITIZE DEEP-LEARNING-BASED CROP MODELS 20 REQUIREMENTS OF THE DEEP-LEARNING-BASED CROP MODELS 21 OPENING REMARKS AND THESIS OBJECTIVES 22 LITERATURE CITED 23 Chapter 1 34 Chapter 1-1 35 ABSTRACT 35 INTRODUCTION 37 MATERIALS AND METHODS 40 RESULTS 50 DISCUSSION 59 CONCLUSION 63 LITERATURE CITED 64 Chapter 1-2 71 ABSTRACT 71 INTRODUCTION 73 MATERIALS AND METHODS 75 RESULTS 84 DISCUSSION 92 CONCLUSION 101 LITERATURE CITED 102 Chapter 2 108 ABSTRACT 108 NOMENCLATURE 110 INTRODUCTION 112 MATERIALS AND METHODS 115 RESULTS 124 DISCUSSION 133 CONCLUSION 137 LITERATURE CITED 138 Chapter 3 144 ABSTRACT 144 INTRODUCTION 146 MATERIALS AND METHODS 149 RESULTS 169 DISCUSSION 182 CONCLUSION 187 LITERATURE CITED 188 GENERAL DISCUSSION 196 GENERAL CONCLUSION 201 ABSTRACT IN KOREAN 203 APPENDIX 204박

Intelligent classification of ammonia concentration based on odor profile

This thesis presents the intelligent classification of ammonia concentration based on the standard of oil and gas industries wastewater discharge. The intelligent classification using signal processing is a well-known technique in many applications and as well in the oil and gas industry. The intelligent classification technique for ammonia concentration classification is a demanding technique especially in the environmental sector. Ammonia solution properties and ammonia solution preparations were studied in this thesis which commonly used in industry. The objectives of this thesis are to develop an intelligence classification of ammonia concentration based on the oil and gas industry wastewater discharge schedule and to analyze performance of the intelligent classification of ammonia concentration based on the oil and gas industry wastewater discharge schedule. In this thesis the ammonia odor profile has been pre-identified by chemist using four sensor array. The ammonia concentration was validated using a commercialized gas sensor and spectrophotometer to cross-validated e-nose instrument. The odor profile from two different samples; high (20 ppm and 25 ppm) and low (5 ppm, 10 ppm and 1 5ppm) concentration that have been normalized and visualized in a 2D plot to extract the unique patterns. The variance of the low and high concentration of ammonia odor profile has been identified as different group samples. This group samples have been analyzed statistically using Boxplot, calibration curve and proximity matrix, The thesis describes the statistical techniques to visualize the pattern and using mean features to classify between the low and high concentration. Two intelligent classification techniques have been used which are Artificial Neural Network (ANN) using the back-propagation approaches and then, the result of ANN model was cross-validated.using CBR. Both ANN model and CBR classifier have been measured using several performance measures. From the results, it is observed that ANN model and CBR classifier are capable of classifying 100% of ammonia concentration odor profile from the water. The results can also significantly reduce the cost and time, and improve product reliability and customer confidence

Personalised body counter calibration using anthropometric parameters

This book describes the development of a new method for personalisation of efficiency factors in partial body counting. Its achieved goal is the quantification of uncertainties in those factors due to variation in anatomy of the measured persons, and their reduction by correlation with anthropometric parameters. The method was applied to a detector system at the In Vivo Measurement Laboratory at Karlsruhe Institute of Technology using Monte Carlo simulation and computational phantoms

Object Oriented Case Representation for CBR Application in Structural Analysis

Knowledge representation is an essential element of a problem-solving technique through computational work. This article describes the knowledge representation scheme formulated to represent a problem in the structural analysis domain for solution through case-based reasoning (CBR). The numerical knowledge is extracted from a real-life problem that can be used as an input in a case-based reasoner. The geometric topology, loading, and mesh distribution for structure from a solved problem is represented in the form of numerical values for easy adaptation by the new problem. The representation scheme is a step forward in development of a system to be utilized for the time-consuming structural analysis requiring heavy computational power, such as an aircraft wing and fuselage components. The success of the representation strategy is a proof that CBR can work as a powerful problem-solving tool in this domain. &nbsp

A Continuous Grasp Representation for the Imitation Learning of Grasps on Humanoid Robots

Models and methods are presented which enable a humanoid robot to learn reusable, adaptive grasping skills. Mechanisms and principles in human grasp behavior are studied. The findings are used to develop a grasp representation capable of retaining specific motion characteristics and of adapting to different objects and tasks. Based on the representation a framework is proposed which enables the robot to observe human grasping, learn grasp representations, and infer executable grasping actions