Re-engineering the ant colony optimization for CMP architectures

[EN] The ant colony optimization (ACO) is inspired by the behavior of real ants, and as a bioinspired method, its underlying computation is massively parallel by definition. This paper shows re-engineering strategies to migrate the ACO algorithm applied to the Traveling Salesman Problem to modern Intel-based multi- and many-core architectures in a step-by-step methodology. The paper provides detailed guidelines on how to optimize the algorithm for the intra-node (thread and vector) parallelization, showing the performance scalability along with the number of cores on different Intel architectures, reporting up to 5.5x speedup factor between the Intel Xeon Phi Knights Landing and Intel Xeon v2. Moreover, parallel efficiency is provided for all targeted architectures, finding that core load imbalance, memory bandwidth limitations, and NUMA effects on data placement are some of the key factors limiting performance. Finally, a distributed implementation is also presented, reaching up to 2.96x speedup factor when running the code on 3 nodes over the single-node counterpart version. In the latter case, the parallel efficiency is affected by the synchronization frequency, which also affects the quality of the solution found by the distributed implementation.This work was partially supported by the Fundación Séneca, Agencia de Ciencia y Tecnología de la Región de Murcia under Project 20813/PI/18, and by Spanish Ministry of Science, Innovation and Universities as well as European Commission FEDER funds under Grants TIN2015-66972-C5-3-R, RTI2018-098156-B-C53, TIN2016-78799-P (AEI/FEDER, UE), and RTC-2017-6389-5. We acknowledge the excellent work done by Victor Montesinos while he was doing a research internship supported by the University of Murcia.Cecilia-Canales, JM.; García Carrasco, JM. (2020). Re-engineering the ant colony optimization for CMP architectures. 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Ant Colony Optimization

Ant Colony Optimization (ACO) is the best example of how studies aimed at understanding and modeling the behavior of ants and other social insects can provide inspiration for the development of computational algorithms for the solution of difficult mathematical problems. Introduced by Marco Dorigo in his PhD thesis (1992) and initially applied to the travelling salesman problem, the ACO field has experienced a tremendous growth, standing today as an important nature-inspired stochastic metaheuristic for hard optimization problems. This book presents state-of-the-art ACO methods and is divided into two parts: (I) Techniques, which includes parallel implementations, and (II) Applications, where recent contributions of ACO to diverse fields, such as traffic congestion and control, structural optimization, manufacturing, and genomics are presented

METADOCK: A parallel metaheuristic schema for virtual screening methods

Virtual screening through molecular docking can be translated into an optimization problem, which can be tackled with metaheuristic methods. The interaction between two chemical compounds (typically a protein, enzyme or receptor, and a small molecule, or ligand) is calculated by using highly computationally demanding scoring functions that are computed at several binding spots located throughout the protein surface. This paper introduces METADOCK, a novel molecular docking methodology based on parameterized and parallel metaheuristics and designed to leverage heterogeneous computers based on heterogeneous architectures. The application decides the optimization technique at running time by setting a configuration schema. Our proposed solution finds a good workload balance via dynamic assignment of jobs to heterogeneous resources which perform independent metaheuristic executions when computing different molecular interactions required by the scoring functions in use. A cooperative scheduling of jobs optimizes the quality of the solution and the overall performance of the simulation, so opening a new path for further developments of virtual screening methods on high-performance contemporary heterogeneous platforms.Ingeniería, Industria y Construcció

Generic Techniques in General Purpose GPU Programming with Applications to Ant Colony and Image Processing Algorithms

In 2006 NVIDIA introduced a new unified GPU architecture facilitating general-purpose computation on the GPU. The following year NVIDIA introduced CUDA, a parallel programming architecture for developing general purpose applications for direct execution on the new unified GPU. CUDA exposes the GPU's massively parallel architecture of the GPU so that parallel code can be written to execute much faster than its sequential counterpart. Although CUDA abstracts the underlying architecture, fully utilising and scheduling the GPU is non-trivial and has given rise to a new active area of research. Due to the inherent complexities pertaining to GPU development, in this thesis we explore and find efficient parallel mappings of existing and new parallel algorithms on the GPU using NVIDIA CUDA. We place particular emphasis on metaheuristics, image processing and designing reusable techniques and mappings that can be applied to other problems and domains. We begin by focusing on Ant Colony Optimisation (ACO), a nature inspired heuristic approach for solving optimisation problems. We present a versatile improved data-parallel approach for solving the Travelling Salesman Problem using ACO resulting in significant speedups. By extending our initial work, we show how existing mappings of ACO on the GPU are unable to compete against their sequential counterpart when common CPU optimisation strategies are employed and detail three distinct candidate set parallelisation strategies for execution on the GPU. By further extending our data-parallel approach we present the first implementation of an ACO-based edge detection algorithm on the GPU to reduce the execution time and improve the viability of ACO-based edge detection. We finish by presenting a new color edge detection technique using the volume of a pixel in the HSI color space along with a parallel GPU implementation that is able to withstand greater levels of noise than existing algorithms

Accelerating ant colony optimization-based edge detection on the GPU using CUDA

Ant Colony Optimization (ACO) is a nature-inspired metaheuristic that can be applied to a wide range of optimization problems. In this paper we present the first parallel implementation of an ACO-based (image processing) edge detection algorithm on the Graphics Processing Unit (GPU) using NVIDIA CUDA. We extend recent work so that we are able to implement a novel data-parallel approach that maps individual ants to thread warps. By exploiting the massively parallel nature of the GPU, we are able to execute significantly more ants per ACO-iteration allowing us to reduce the total number of iterations required to create an edge map. We hope that reducing the execution time of an ACO-based implementation of edge detection will increase its viability in image processing and computer vision