Kernelization and Parameterized Algorithms for 3-Path Vertex Cover

A 3-path vertex cover in a graph is a vertex subset $C$ such that every path of three vertices contains at least one vertex from $C$. The parameterized 3-path vertex cover problem asks whether a graph has a 3-path vertex cover of size at most $k$. In this paper, we give a kernel of $5k$ vertices and an $O^*(1.7485^k)$-time and polynomial-space algorithm for this problem, both new results improve previous known bounds.Comment: in TAMC 2016, LNCS 9796, 201

Some results on triangle partitions

We show that there exist efficient algorithms for the triangle packing problem in colored permutation graphs, complete multipartite graphs, distance-hereditary graphs, k-modular permutation graphs and complements of k-partite graphs (when k is fixed). We show that there is an efficient algorithm for C_4-packing on bipartite permutation graphs and we show that C_4-packing on bipartite graphs is NP-complete. We characterize the cobipartite graphs that have a triangle partition

QPTAS and Subexponential Algorithm for Maximum Clique on Disk Graphs

A (unit) disk graph is the intersection graph of closed (unit) disks in the plane. Almost three decades ago, an elegant polynomial-time algorithm was found for Maximum Clique on unit disk graphs [Clark, Colbourn, Johnson; Discrete Mathematics '90]. Since then, it has been an intriguing open question whether or not tractability can be extended to general disk graphs. We show the rather surprising structural result that a disjoint union of cycles is the complement of a disk graph if and only if at most one of those cycles is of odd length. From that, we derive the first QPTAS and subexponential algorithm running in time 2^{O~(n^{2/3})} for Maximum Clique on disk graphs. In stark contrast, Maximum Clique on intersection graphs of filled ellipses or filled triangles is unlikely to have such algorithms, even when the ellipses are close to unit disks. Indeed, we show that there is a constant ratio of approximation which cannot be attained even in time 2^{n^{1-epsilon}}, unless the Exponential Time Hypothesis fails

Optimal Filling of Shapes

We present filling as a type of spatial subdivision problem similar to covering and packing. Filling addresses the optimal placement of overlapping objects lying entirely inside an arbitrary shape so as to cover the most interior volume. In n-dimensional space, if the objects are polydisperse n-balls, we show that solutions correspond to sets of maximal n-balls. For polygons, we provide a heuristic for finding solutions of maximal discs. We consider the properties of ideal distributions of N discs as N approaches infinity. We note an analogy with energy landscapes.Comment: 5 page

Maximum weight cycle packing in directed graphs, with application to kidney exchange programs

Centralized matching programs have been established in several countries to organize kidney exchanges between incompatible patient-donor pairs. At the heart of these programs are algorithms to solve kidney exchange problems, which can be modelled as cycle packing problems in a directed graph, involving cycles of length 2, 3, or even longer. Usually, the goal is to maximize the number of transplants, but sometimes the total benefit is maximized by considering the differences between suitable kidneys. These problems correspond to computing cycle packings of maximum size or maximum weight in directed graphs. Here we prove the APX-completeness of the problem of finding a maximum size exchange involving only 2-cycles and 3-cycles. We also present an approximation algorithm and an exact algorithm for the problem of finding a maximum weight exchange involving cycles of bounded length. The exact algorithm has been used to provide optimal solutions to real kidney exchange problems arising from the National Matching Scheme for Paired Donation run by NHS Blood and Transplant, and we describe practical experience based on this collaboration

Vertex and edge covers with clustering properties: complexity and algorithms

We consider the concepts of a t-total vertex cover and a t-total edge cover (t≥1), which generalise the notions of a vertex cover and an edge cover, respectively. A t-total vertex (respectively edge) cover of a connected graph G is a vertex (edge) cover S of G such that each connected component of the subgraph of G induced by S has at least t vertices (edges). These definitions are motivated by combining the concepts of clustering and covering in graphs. Moreover they yield a spectrum of parameters that essentially range from a vertex cover to a connected vertex cover (in the vertex case) and from an edge cover to a spanning tree (in the edge case). For various values of t, we present NP-completeness and approximability results (both upper and lower bounds) and FTP algorithms for problems concerned with finding the minimum size of a t-total vertex cover, t-total edge cover and connected vertex cover, in particular improving on a previous FTP algorithm for the latter problem

Connectivity measures for internet topologies.

The topology of the Internet has initially been modelled as an undirected graph, where vertices correspond to so-called Autonomous Systems (ASs),and edges correspond to physical links between pairs of ASs. However, in order to capture the impact of routing policies, it has recently become apparent that one needs to classify the edges according to the existing economic relationships (customer-provider, peer-to-peer or siblings) between the ASs. This leads to a directed graph model in which traffic can be sent only along so-called valley-free paths. Four different algorithms have been proposed in the literature for inferring AS relationships using publicly available data from routing tables. We investigate the differences in the graph models produced by these algorithms, focussing on connectivity measures. To this aim, we compute the maximum number of vertex-disjoint valley-free paths between ASs as well as the size of a minimum cut separating a pair of ASs. Although these problems are solvable in polynomial time for ordinary graphs, they are NP-hard in our setting. We formulate the two problems as integer programs, and we propose a number of exact algorithms for solving them. For the problem of finding the maximum number of vertex-disjoint paths, we discuss two algorithms; the first one is a branch-and-price algorithm based on the IP formulation, and the second algorithm is a non LP based branch-and-bound algorithm. For the problem of finding minimum cuts we use a branch-and-cut algo rithm, based on the IP formulation of this problem. Using these algorithms, we obtain exact solutions for both problems in reasonable time. It turns out that there is a large gap in terms of the connectivity measures between the undirected and directed models. This finding supports our conclusion that economic relationships need to be taken into account when building a topology of the Internet.Research; Internet;