Auto-completion of contours in sketches, maps and sparse 2D images based on topological persistence.

We design a new fast algorithm to automatically complete closed contours in a finite point cloud on the plane. The only input can be a scanned map with almost closed curves, a hand-drawn artistic sketch or any sparse dotted image in 2D without any extra parameters. The output is a hierarchy of closed contours that have a long enough life span (persistence) in a sequence of nested neighborhoods of the input points. We prove theoretical guarantees when, for a given noisy sample of a graph in the plane, the output contours geometrically approximate the original contours in the unknown graph

Auto-completion of Contours in Sketches, Maps and Sparse 2D Images Based on Topological Persistence

We design a new fast algorithm to automatically complete closed contours in a finite point cloud on the plane. The only input can be a scanned map with almost closed curves, a hand-drawn artistic sketch or any sparse dotted image in 2D without any extra parameters. The output is a hierarchy of closed contours that have a long enough life span (persistence) in a sequence of nested neighborhoods of the input points. We prove theoretical guarantees when, for a given noisy sample of a graph in the plane, the output contours geometrically approximate the original contours in the unknown graph

A Homologically Persistent Skeleton is a fast and robust descriptor of interest points in 2D images

2D images often contain irregular salient features and interest points with non-integer coordinates. Our skeletonization problem for such a noisy sparse cloud is to summarize the topology of a given 2D cloud across all scales in the form of a graph, which can be used for combining local features into a more powerful object-wide descriptor. We extend a classical Minimum Spanning Tree of a cloud to a Homologically Persistent Skeleton, which is scale-and-rotation invariant and depends only on the cloud without extra parameters. This graph (1) is computable in time O(nlogn) for any n points in the plane; (2) has the minimum total length among all graphs that span a 2D cloud at any scale and also have most persistent 1-dimensional cycles; (3) is geometrically stable for noisy samples around planar graphs

A one-dimensional Homologically Persistent Skeleton of an unstructured point cloud in any metric space

Real data are often given as a noisy unstructured point cloud, which is hard to visualize. The important problem is to represent topological structures hidden in a cloud by using skeletons with cycles. All past skeletonization methods require extra parameters such as a scale or a noise bound. We define a homologically persistent skeleton, which depends only on a cloud of points and contains optimal subgraphs representing 1-dimensional cycles in the cloud across all scales. The full skeleton is a universal structure encoding topological persistence of cycles directly on the cloud. Hence a 1-dimensional shape of a cloud can be now easily predicted by visualizing our skeleton instead of guessing a scale for the original unstructured cloud. We derive more subgraphs to reconstruct provably close approximations to an unknown graph given only by a noisy sample in any metric space. For a cloud of n points in the plane, the full skeleton and all its important subgraphs can be computed in time O(n log n)

The mergegram of a dendrogram and its stability

This paper extends the key concept of persistence within Topological Data Analysis (TDA) in a new direction. TDA quantifies topological shapes hidden in unorganized data such as clouds of unordered points. In the 0-dimensional case the distance-based persistence is determined by a single-linkage (SL) clustering of a finite set in a metric space. Equivalently, the 0D persistence captures only edge-lengths of a Minimum Spanning Tree (MST). Both SL dendrogram and MST are unstable under perturbations of points. We define the new stable-under-noise mergegram, which outperforms previous isometry invariants on a classification of point clouds by PersLay

Skeletonisation algorithms with theoretical guarantees for unorganised point clouds with high levels of noise

Data Science aims to extract meaningful knowledge from unorganised data. Real datasets usually come in the form of a cloud of points with only pairwise distances. Numerous applications require to visualise an overall shape of a noisy cloud of points sampled from a non-linear object that is more complicated than a union of disjoint clusters. The skeletonisation problem in its hardest form is to find a 1-dimensional skeleton that correctly represents a shape of the cloud. This paper compares several algorithms that solve the above skeletonisation problem for any point cloud and guarantee a successful reconstruction. For example, given a highly noisy point sample of an unknown underlying graph, a reconstructed skeleton should be geometrically close and homotopy equivalent to (has the same number of independent cycles as) the underlying graph. One of these algorithm produces a Homologically Persistent Skeleton (HoPeS) for any cloud without extra parameters. This universal skeleton contains sub-graphs that provably represent the 1-dimensional shape of the cloud at any scale. Other subgraphs of HoPeS reconstruct an unknown graph from its noisy point sample with a correct homotopy type and within a small offset of the sample. The extensive experiments on synthetic and real data reveal for the first time the maximum level of noise that allows successful graph reconstructions.Comment: This paper has been published in the journal Pattern Recognitio