Systematic literature review (SLR) automation: a systematic literature review

Context: A systematic literature review(SLR) is a methodology used to find and aggregate all relevant studies about a specific research question or topic of interest. Most of the SLR processes are manually conducted. Automating these processes can reduce the workload and time consumed by human. Method: we use SLR as a methodology to survey the literature about the technologies used to automate SLR processes. Result: from the collected data we found many work done to automate the study selection process but there is no evidence about automation of the planning and reporting process. Most of the authors use machine learning classifiers to automate the study selection process. From our survey, there are processes that are similar to the SLR process for which there are automatic techniques to perform them. Conclusion: Because of these results, we concluded that there should be more research done on the planning, reporting, data extraction and synthesizing processes of SLR

Advanced analytics for the automation of medical systematic reviews

While systematic reviews (SRs) are positioned as an essential element of modern evidence-based medical practice, the creation and update of these reviews is resource intensive. In this research, we propose to leverage advanced analytics techniques for automatically classifying articles for inclusion and exclusion for systematic reviews. Specifically, we used soft-margin polynomial Support Vector Machine (SVM) as a classifier, exploited Unified Medical Language Systems (UMLS) for medical terms extraction, and examined various techniques to resolve the class imbalance issue. Through an empirical study, we demonstrated that soft-margin polynomial SVM achieves better classification performance than the existing algorithms used in current research, and the performance of the classifier can be further improved by using UMLS to identify medical terms in articles and applying re-sampling methods to resolve the class imbalance issue

Natural Language Processing in-and-for Design Research

We review the scholarly contributions that utilise Natural Language Processing (NLP) methods to support the design process. Using a heuristic approach, we collected 223 articles published in 32 journals and within the period 1991-present. We present state-of-the-art NLP in-and-for design research by reviewing these articles according to the type of natural language text sources: internal reports, design concepts, discourse transcripts, technical publications, consumer opinions, and others. Upon summarizing and identifying the gaps in these contributions, we utilise an existing design innovation framework to identify the applications that are currently being supported by NLP. We then propose a few methodological and theoretical directions for future NLP in-and-for design research

Multiple Retrieval Models and Regression Models for Prior Art Search

This paper presents the system called PATATRAS (PATent and Article Tracking, Retrieval and AnalysiS) realized for the IP track of CLEF 2009. Our approach presents three main characteristics: 1. The usage of multiple retrieval models (KL, Okapi) and term index definitions (lemma, phrase, concept) for the three languages considered in the present track (English, French, German) producing ten different sets of ranked results. 2. The merging of the different results based on multiple regression models using an additional validation set created from the patent collection. 3. The exploitation of patent metadata and of the citation structures for creating restricted initial working sets of patents and for producing a final re-ranking regression model. As we exploit specific metadata of the patent documents and the citation relations only at the creation of initial working sets and during the final post ranking step, our architecture remains generic and easy to extend

Cognition-based approaches for high-precision text mining

This research improves the precision of information extraction from free-form text via the use of cognitive-based approaches to natural language processing (NLP). Cognitive-based approaches are an important, and relatively new, area of research in NLP and search, as well as linguistics. Cognitive approaches enable significant improvements in both the breadth and depth of knowledge extracted from text. This research has made contributions in the areas of a cognitive approach to automated concept recognition in. Cognitive approaches to search, also called concept-based search, have been shown to improve search precision. Given the tremendous amount of electronic text generated in our digital and connected world, cognitive approaches enable substantial opportunities in knowledge discovery. The generation and storage of electronic text is ubiquitous, hence opportunities for improved knowledge discovery span virtually all knowledge domains. While cognition-based search offers superior approaches, challenges exist due to the need to mimic, even in the most rudimentary way, the extraordinary powers of human cognition. This research addresses these challenges in the key area of a cognition-based approach to automated concept recognition. In addition it resulted in a semantic processing system framework for use in applications in any knowledge domain. Confabulation theory was applied to the problem of automated concept recognition. This is a relatively new theory of cognition using a non-Bayesian measure, called cogency, for predicting the results of human cognition. An innovative distance measure derived from cogent confabulation and called inverse cogency, to rank order candidate concepts during the recognition process. When used with a multilayer perceptron, it improved the precision of concept recognition by 5% over published benchmarks. Additional precision improvements are anticipated. These research steps build a foundation for cognition-based, high-precision text mining. Long-term it is anticipated that this foundation enables a cognitive-based approach to automated ontology learning. Such automated ontology learning will mimic human language cognition, and will, in turn, enable the practical use of cognitive-based approaches in virtually any knowledge domain --Abstract, page iii

Extracting human protein information from MEDLINE using a full-sentence parser

Today, a fair number of systems are available for the task of processing biological data. The development of effective systems is of great importance since they can support both the research and the everyday work of biologists. It is well known that biological databases are large both in size and number, hence data processing technologies are required for the fast and effective management of the contents stored in databases like MEDLINE. A possible solution for content management is the application of natural language processing methods to help make this task easier. With our approach we would like to learn more about the interactions of human genes using full-sentence parsing. Given a sentence, the syntactic parser assigns to it a syntactic structure, which consists of a set of labelled links connecting pairs of words. The parser also produces a constituent representation of a sentence (showing noun phrases, verb phrases, and so on). Here we show experimentally that using the syntactic information of each abstract, the biological interactions of genes can be predicted. Hence, it is worth developing the kind of information extraction (IE) system that can retrieve information about gene interactions just by using syntactic information contained in these text. Our IE system can handle certain types of gene interactions with the help of machine learning (ML) methodologies (Hidden Markov Models, Artificial Neural Networks, Decision Trees, Support Vector Machines). The experiments and practical usage show clearly that our system can provide a useful intuitive guide for biological researchers in their investigations and in the design of their experiments

Single document keywords extraction in Bahasa Indonesia using phrase chunking

Keywords help readers to understand the idea of a document quickly. Unfortunately, considerable time and effort are often needed to come up with a good set of keywords manually. This research focused on generating keywords from a document automatically using phrase chunking. Firstly, we collected part of speech patterns from a collection of documents. Secondly, we used those patterns to extract candidate keywords from the abstract and the content of a document. Finally, keywords are selected from the candidates based on the number of words in the keyword phrases and some scenarios involving candidate reduction and sorting. We evaluated the result of each scenario using precision, recall, and F-measure. The experiment results show: i) shorter-phrase keywords with string reduction extracted from the abstract and sorted by frequency provides the highest score, ii) in every proposed scenario, extracting keywords using the abstract always presents a better result, iii) using shorter-phrase patterns in keywords extraction gives better score in comparison to using all phrase patterns, iv) sorting scenarios based on the multiplication of candidate frequencies and the weight of the phrase patterns offer better results