Semantic Modeling of Analytic-based Relationships with Direct Qualification

Successfully modeling state and analytics-based semantic relationships of documents enhances representation, importance, relevancy, provenience, and priority of the document. These attributes are the core elements that form the machine-based knowledge representation for documents. However, modeling document relationships that can change over time can be inelegant, limited, complex or overly burdensome for semantic technologies. In this paper, we present Direct Qualification (DQ), an approach for modeling any semantically referenced document, concept, or named graph with results from associated applied analytics. The proposed approach supplements the traditional subject-object relationships by providing a third leg to the relationship; the qualification of how and why the relationship exists. To illustrate, we show a prototype of an event-based system with a realistic use case for applying DQ to relevancy analytics of PageRank and Hyperlink-Induced Topic Search (HITS).Comment: Proceedings of the 2015 IEEE 9th International Conference on Semantic Computing (IEEE ICSC 2015

GI Systems for public health with an ontology based approach

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.Health is an indispensable attribute of human life. In modern age, utilizing technologies for health is one of the emergent concepts in several applied fields. Computer science, (geographic) information systems are some of the interdisciplinary fields which motivates this thesis. Inspiring idea of the study is originated from a rhetorical disease DbHd: Database Hugging Disorder, defined by Hans Rosling at World Bank Open Data speech in May 2010. The cure of this disease can be offered as linked open data, which contains ontologies for health science, diseases, genes, drugs, GEO species etc. LOD-Linked Open Data provides the systematic application of information by publishing and connecting structured data on the Web. In the context of this study we aimed to reduce boundaries between semantic web and geo web. For this reason a use case data is studied from Valencia CSISP- Research Center of Public Health in which the mortality rates for particular diseases are represented spatio-temporally. Use case data is divided into three conceptual domains (health, spatial, statistical), enhanced with semantic relations and descriptions by following Linked Data Principles. Finally in order to convey complex health-related information, we offer an infrastructure integrating geo web and semantic web. Based on the established outcome, user access methods are introduced and future researches/studies are outlined

Publication and Discovery of Semantically Annotated Geospatial Web Services

Proceedings of the 26th International Conference on Informatics - Informatics for Environmental Protection, Sustainable Development and Risk Management, August 29 - 31, 2012 Umweltbundesamt DessauEnvironmental information and services have become a crucial asset in the creation of decission support systems. Unfortunately, this information and services are not usually exposed in an interoperable and standard way, limiting their reusability and impact in the community. Publishing and discovering geospatial information and services on the Web is therefore an important challenge in order to create a breeding ground for collaboration and more sophisticated environmental platforms. Based on common standards defined by the Open Geospatial Consortium (OGC) as the starting point to ensure interoperability, we propose a discovery mechanism based on semantic annotations. OGC service descriptions are annotated with SAWSDL and linked to concepts in domain ontologies, following a common semantic service model. We seamlessly integrate the semantics in the standard OGC discovery infrastructure, extending the CSW service catalogues with semantic publication and discovery. Semantics queries can be created based on formal languages like WSML, significantly improving the precission of discovery. In this paper we present our approach, which provides a semantic infrastructure for publication and discovery of environmentally enabled web services

Training of Crisis Mappers and Map Production from Multi-sensor Data: Vernazza Case Study (Cinque Terre National Park, Italy)

This aim of paper is to presents the development of a multidisciplinary project carried out by the cooperation between Politecnico di Torino and ITHACA (Information Technology for Humanitarian Assistance, Cooperation and Action). The goal of the project was the training in geospatial data acquiring and processing for students attending Architecture and Engineering Courses, in order to start up a team of "volunteer mappers". Indeed, the project is aimed to document the environmental and built heritage subject to disaster; the purpose is to improve the capabilities of the actors involved in the activities connected in geospatial data collection, integration and sharing. The proposed area for testing the training activities is the Cinque Terre National Park, registered in the World Heritage List since 1997. The area was affected by flood on the 25th of October 2011. According to other international experiences, the group is expected to be active after emergencies in order to upgrade maps, using data acquired by typical geomatic methods and techniques such as terrestrial and aerial Lidar, close-range and aerial photogrammetry, topographic and GNSS instruments etc.; or by non conventional systems and instruments such us UAV, mobile mapping etc. The ultimate goal is to implement a WebGIS platform to share all the data collected with local authorities and the Civil Protectio

Linking early geospatial documents, one place at a time: annotation of geographic documents with Recogito

Recogito is an open source tool for the semi-automatic annotation of place references in maps and texts. It was developed as part of the Pelagios 3 research project, which aims to build up a comprehensive directory of places referred to in early maps and geographic writing predating the year 1492. Pelagios 3 focuses specifically on sources from the Classical Latin, Greek and Byzantine periods; on Mappae Mundi and narrative texts from the European Medieval period; on Late Medieval Portolans; and on maps and texts from the early Islamic and early Chinese traditions. Since the start of the project in September 2013, the team has harvested more than 120,000 toponyms, manually verifying almost 60,000 of them. Furthermore, the team held two public annotation workshops supported through the Open Humanities Awards 2014. In these workshops, a mixed audience of students and academics of different backgrounds used Recogito to add several thousand contributions on each workshop day. A number of benefits arise out of this work: on the one hand, the digital identification of places – and the names used for them – makes the documents' contents amenable to information retrieval technology, i.e. documents become more easily search- and discoverable to users than through conventional metadata-based search alone. On the other hand, the documents are opened up to new forms of re-use. For example, it becomes possible to “map” and compare the narrative of texts, and the contents of maps with modern day tools like Web maps and GIS; or to analyze and contrast documents’ geographic properties, toponymy and spatial relationships. Seen in a wider context, we argue that initiatives such as ours contribute to the growing ecosystem of the “Graph of Humanities Data” that is gathering pace in the Digital Humanities (linking data about people, places, events, canonical references, etc.), which has the potential to open up new avenues for computational and quantitative research in a variety of fields including History, Geography, Archaeology, Classics, Genealogy and Modern Languages

The Delft Report: Linked Data and the challenges for geographic information standardization

The addition of Linked Data to the geographic standards may produce effective cost savings in spatial data production and use by improving some issues relevant to Spatial Data Infrastructures (SDI). The combination of Linked Data and SDIs, its benefits and challenges are collected in the report on Linked Data presented at 32nd ISO/TC 211 plenary in Delft. This paper presents a brief summary of the mentioned report, where we focus on the main recommendations in the context and evaluate their potential impact in SDIs

Search improvement within the geospatial web in the context of spatial data infrastructures

El trabajo desarrollado en esta tesis doctoral demuestra que es posible mejorar la búsqueda en el contexto de las Infraestructuras de Datos Espaciales mediante la aplicación de técnicas y buenas prácticas de otras comunidades científicas, especialmente de las comunidades de la Web y de la Web Semántica (por ejemplo, Linked Data). El uso de las descripciones semánticas y las aproximaciones basadas en el contenido publicado por la comunidad geoespacial pueden ayudar en la búsqueda de información sobre los fenómenos geográficos, y en la búsqueda de recursos geoespaciales en general. El trabajo comienza con un análisis de una aproximación para mejorar la búsqueda de las entidades geoespaciales desde la perspectiva de geocodificación tradicional. La arquitectura de geocodificación compuesta propuesta en este trabajo asegura una mejora de los resultados de geocodificación gracias a la utilización de diferentes proveedores de información geográfica. En este enfoque, el uso de patrones estructurales de diseño y ontologías en esta aproximación permite una arquitectura avanzada en términos de extensibilidad, flexibilidad y adaptabilidad. Además, una arquitectura basada en la selección de servicio de geocodificación permite el desarrollo de una metodología de la georreferenciación de diversos tipos de información geográfica (por ejemplo, direcciones o puntos de interés). A continuación, se presentan dos aplicaciones representativas que requieren una caracterización semántica adicional de los recursos geoespaciales. El enfoque propuesto en este trabajo utiliza contenidos basados en heurísticas para el muestreo de un conjunto de recursos geopesaciales. La primera parte se dedica a la idea de la abstracción de un fenómeno geográfico de su definición espacial. La investigación muestra que las buenas prácticas de la Web Semántica se puede reutilizar en el ámbito de una Infraestructura de Datos Espaciales para describir los servicios geoespaciales estandarizados por Open Geospatial Consortium por medio de geoidentificadores (es decir, por medio de las entidades de una ontología geográfica). La segunda parte de este capítulo desglosa la aquitectura y componentes de un servicio de geoprocesamiento para la identificación automática de ortoimágenes ofrecidas a través de un servicio estándar de publicación de mapas (es decir, los servicios que siguen la especificación OGC Web Map Service). Como resultado de este trabajo se ha propuesto un método para la identificación de los mapas ofrecidos por un Web Map Service que son ortoimágenes. A continuación, el trabajo se dedica al análisis de cuestiones relacionadas con la creación de los metadatos de recursos de la Web en el contexto del dominio geográfico. Este trabajo propone una arquitectura para la generación automática de conocimiento geográfico de los recursos Web. Ha sido necesario desarrollar un método para la estimación de la cobertura geográfica de las páginas Web. Las heurísticas propuestas están basadas en el contenido publicado por os proveedores de información geográfica. El prototipo desarrollado es capaz de generar metadatos. El modelo generado contiene el conjunto mínimo recomendado de elementos requeridos por un catálogo que sigue especificación OGC Catalogue Service for the Web, el estandar recomendado por deiferentes Infraestructuras de Datos Espaciales (por ejemplo, the Infrastructure for Spatial Information in the European Community (INSPIRE)). Además, este estudio determina algunas características de la Web Geoespacial actual. En primer lugar, ofrece algunas características del mercado de los proveedores de los recursos Web de la información geográfica. Este estudio revela algunas prácticas de la comunidad geoespacial en la producción de metadatos de las páginas Web, en particular, la falta de metadatos geográficos. Todo lo anterior es la base del estudio de la cuestión del apoyo a los usuarios no expertos en la búsqueda de recursos de la Web Geoespacial. El motor de búsqueda dedicado a la Web Geoespacial propuesto en este trabajo es capaz de usar como base un motor de búsqueda existente. Por otro lado, da soporte a la búsqueda exploratoria de los recursos geoespaciales descubiertos en la Web. El experimento sobre la precisión y la recuperación ha demostrado que el prototipo desarrollado en este trabajo es al menos tan bueno como el motor de búsqueda remoto. Un estudio dedicado a la utilidad del sistema indica que incluso los no expertos pueden realizar una tarea de búsqueda con resultados satisfactorios

Knowledge-Driven Methods for Geographic Information Extraction in the Biomedical Domain

abstract: Accounting for over a third of all emerging and re-emerging infections, viruses represent a major public health threat, which researchers and epidemiologists across the world have been attempting to contain for decades. Recently, genomics-based surveillance of viruses through methods such as virus phylogeography has grown into a popular tool for infectious disease monitoring. When conducting such surveillance studies, researchers need to manually retrieve geographic metadata denoting the location of infected host (LOIH) of viruses from public sequence databases such as GenBank and any publication related to their study. The large volume of semi-structured and unstructured information that must be reviewed for this task, along with the ambiguity of geographic locations, make it especially challenging. Prior work has demonstrated that the majority of GenBank records lack sufficient geographic granularity concerning the LOIH of viruses. As a result, reviewing full-text publications is often necessary for conducting in-depth analysis of virus migration, which can be a very time-consuming process. Moreover, integrating geographic metadata pertaining to the LOIH of viruses from different sources, including different fields in GenBank records as well as full-text publications, and normalizing the integrated metadata to unique identifiers for subsequent analysis, are also challenging tasks, often requiring expert domain knowledge. Therefore, automated information extraction (IE) methods could help significantly accelerate this process, positively impacting public health research. However, very few research studies have attempted the use of IE methods in this domain. This work explores the use of novel knowledge-driven geographic IE heuristics for extracting, integrating, and normalizing the LOIH of viruses based on information available in GenBank and related publications; when evaluated on manually annotated test sets, the methods were found to have a high accuracy and shown to be adequate for addressing this challenging problem. It also presents GeoBoost, a pioneering software system for georeferencing GenBank records, as well as a large-scale database containing over two million virus GenBank records georeferenced using the algorithms introduced here. The methods, database and software developed here could help support diverse public health domains focusing on sequence-informed virus surveillance, thereby enhancing existing platforms for controlling and containing disease outbreaks.Dissertation/ThesisDoctoral Dissertation Biomedical Informatics 201