Efficient similarity computations on parallel machines using data shaping

Similarity computation is a fundamental operation in all forms of data. Big Data is, typically, characterized by attributes such as volume, velocity, variety, veracity, etc. In general, Big Data variety appears as structured, semi-structured or unstructured forms. The volume of Big Data in general, and semi-structured data in particular, is increasing at a phenomenal rate. Big Data phenomenon is posing new set of challenges to similarity computation problems occurring in semi-structured data. Technology and processor architecture trends suggest very strongly that future processors shall have ten\u27s of thousands of cores (hardware threads). Another crucial trend is that ratio between on-chip and off-chip memory to core counts is decreasing. State-of-the-art parallel computing platforms such as General Purpose Graphics Processors (GPUs) and MICs are promising for high performance as well high throughput computing. However, processing semi-structured component of Big Data efficiently using parallel computing systems (e.g. GPUs) is challenging. Reason being most of the emerging platforms (e.g. GPUs) are organized as Single Instruction Multiple Thread/Data machines which are highly structured, where several cores (streaming processors) operate in lock-step manner, or they require a high degree of task-level parallelism. We argue that effective and efficient solutions to key similarity computation problems need to operate in a synergistic manner with the underlying computing hardware. Moreover, semi-structured form input data needs to be shaped or reorganized with the goal to exploit the enormous computing power of \textit{state-of-the-art} highly threaded architectures such as GPUs. For example, shaping input data (via encoding) with minimal data-dependence can facilitate flexible and concurrent computations on high throughput accelerators/co-processors such as GPU, MIC, etc. We consider various instances of traditional and futuristic problems occurring in intersection of semi-structured data and data analytics. Preprocessing is an operation common at initial stages of data processing pipelines. Typically, the preprocessing involves operations such as data extraction, data selection, etc. In context of semi-structured data, twig filtering is used in identifying (and extracting) data of interest. Duplicate detection and record linkage operations are useful in preprocessing tasks such as data cleaning, data fusion, and also useful in data mining, etc., in order to find similar tree objects. Likewise, tree edit is a fundamental metric used in context of tree problems; and similarity computation between trees another key problem in context of Big Data. This dissertation makes a case for platform-centric data shaping as a potent mechanism to tackle the data- and architecture-borne issues in context of semi-structured data processing on GPU and GPU-like parallel architecture machines. In this dissertation, we propose several data shaping techniques for tree matching problems occurring in semi-structured data. We experiment with real world datasets. The experimental results obtained reveal that the proposed platform-centric data shaping approach is effective for computing similarities between tree objects using GPGPUs. The techniques proposed result in performance gains up to three orders of magnitude, subject to problem and platform

A survey on tree matching and XML retrieval

International audienceWith the increasing number of available XML documents, numerous approaches for retrieval have been proposed in the literature. They usually use the tree representation of documents and queries to process them, whether in an implicit or explicit way. Although retrieving XML documents can be considered as a tree matching problem between the query tree and the document trees, only a few approaches take advantage of the algorithms and methods proposed by the graph theory. In this paper, we aim at studying the theoretical approaches proposed in the literature for tree matching and at seeing how these approaches have been adapted to XML querying and retrieval, from both an exact and an approximate matching perspective. This study will allow us to highlight theoretical aspects of graph theory that have not been yet explored in XML retrieval

: Méthodes d'Inférence Symbolique pour les Bases de Données

This dissertation is a summary of a line of research, that I wasactively involved in, on learning in databases from examples. Thisresearch focused on traditional as well as novel database models andlanguages for querying, transforming, and describing the schema of adatabase. In case of schemas our contributions involve proposing anoriginal languages for the emerging data models of Unordered XML andRDF. We have studied learning from examples of schemas for UnorderedXML, schemas for RDF, twig queries for XML, join queries forrelational databases, and XML transformations defined with a novelmodel of tree-to-word transducers.Investigating learnability of the proposed languages required us toexamine closely a number of their fundamental properties, often ofindependent interest, including normal forms, minimization,containment and equivalence, consistency of a set of examples, andfinite characterizability. Good understanding of these propertiesallowed us to devise learning algorithms that explore a possibly largesearch space with the help of a diligently designed set ofgeneralization operations in search of an appropriate solution.Learning (or inference) is a problem that has two parameters: theprecise class of languages we wish to infer and the type of input thatthe user can provide. We focused on the setting where the user inputconsists of positive examples i.e., elements that belong to the goallanguage, and negative examples i.e., elements that do not belong tothe goal language. In general using both negative and positiveexamples allows to learn richer classes of goal languages than usingpositive examples alone. However, using negative examples is oftendifficult because together with positive examples they may cause thesearch space to take a very complex shape and its exploration may turnout to be computationally challenging.Ce mémoire est une courte présentation d’une direction de recherche, à laquelle j’ai activementparticipé, sur l’apprentissage pour les bases de données à partir d’exemples. Cette recherches’est concentrée sur les modèles et les langages, aussi bien traditionnels qu’émergents, pourl’interrogation, la transformation et la description du schéma d’une base de données. Concernantles schémas, nos contributions consistent en plusieurs langages de schémas pour les nouveaumodèles de bases de données que sont XML non-ordonné et RDF. Nous avons ainsi étudiél’apprentissage à partir d’exemples des schémas pour XML non-ordonné, des schémas pour RDF,des requêtes twig pour XML, les requêtes de jointure pour bases de données relationnelles et lestransformations XML définies par un nouveau modèle de transducteurs arbre-à-mot.Pour explorer si les langages proposés peuvent être appris, nous avons été obligés d’examinerde près un certain nombre de leurs propriétés fondamentales, souvent souvent intéressantespar elles-mêmes, y compris les formes normales, la minimisation, l’inclusion et l’équivalence, lacohérence d’un ensemble d’exemples et la caractérisation finie. Une bonne compréhension de cespropriétés nous a permis de concevoir des algorithmes d’apprentissage qui explorent un espace derecherche potentiellement très vaste grâce à un ensemble d’opérations de généralisation adapté àla recherche d’une solution appropriée.L’apprentissage (ou l’inférence) est un problème à deux paramètres : la classe précise delangage que nous souhaitons inférer et le type d’informations que l’utilisateur peut fournir. Nousnous sommes placés dans le cas où l’utilisateur fournit des exemples positifs, c’est-à-dire deséléments qui appartiennent au langage cible, ainsi que des exemples négatifs, c’est-à-dire qui n’enfont pas partie. En général l’utilisation à la fois d’exemples positifs et négatifs permet d’apprendredes classes de langages plus riches que l’utilisation uniquement d’exemples positifs. Toutefois,l’utilisation des exemples négatifs est souvent difficile parce que les exemples positifs et négatifspeuvent rendre la forme de l’espace de recherche très complexe, et par conséquent, son explorationinfaisable

Using semantics in XML query processing

Ph.DDOCTOR OF PHILOSOPH

TopX : efficient and versatile top-k query processing for text, structured, and semistructured data

TopX is a top-k retrieval engine for text and XML data. Unlike Boolean engines, it stops query processing as soon as it can safely determine the k top-ranked result objects according to a monotonous score aggregation function with respect to a multidimensional query. The main contributions of the thesis unfold into four main points, confirmed by previous publications at international conferences or workshops: • Top-k query processing with probabilistic guarantees. • Index-access optimized top-k query processing. • Dynamic and self-tuning, incremental query expansion for top-k query processing. • Efficient support for ranked XML retrieval and full-text search. Our experiments demonstrate the viability and improved efficiency of our approach compared to existing related work for a broad variety of retrieval scenarios.TopX ist eine Top-k Suchmaschine für Text und XML Daten. Im Gegensatz zu Boole\u27; schen Suchmaschinen terminiert TopX die Anfragebearbeitung, sobald die k besten Ergebnisobjekte im Hinblick auf eine mehrdimensionale Anfrage gefunden wurden. Die Hauptbeiträge dieser Arbeit teilen sich in vier Schwerpunkte basierend auf vorherigen Veröffentlichungen bei internationalen Konferenzen oder Workshops: • Top-k Anfragebearbeitung mit probabilistischen Garantien. • Zugriffsoptimierte Top-k Anfragebearbeitung. • Dynamische und selbstoptimierende, inkrementelle Anfrageexpansion für Top-k Anfragebearbeitung. • Effiziente Unterstützung für XML-Anfragen und Volltextsuche. Unsere Experimente bestätigen die Vielseitigkeit und gesteigerte Effizienz unserer Verfahren gegenüber existierenden, führenden Ansätzen für eine weite Bandbreite von Anwendungen in der Informationssuche

Using hybrid algorithmic-crowdsourcing methods for academic knowledge acquisition

such as Figures, Tables, Definitions, Algo- rithms, etc., which are called Knowledge Cells hereafter. An advanced academic search engine which could take advantage of Knowledge Cells and their various relation- ships to obtain more accurate search results is expected. Further, it’s expected to provide a fine-grained search regard- ing to Knowledge Cells for deep-level information discovery and exploration. Therefore, it is important to identify and extract the Knowledge Cells and their various relationships which are often intrinsic and implicit in articles. With the exponential growth of scientific publications, discovery and acquisition of such useful academic knowledge impose some practical challenges For example, existing algorithmic meth- ods can hardly extend to handle diverse layouts of journals, nor to scale up to process massive documents. As crowd- sourcing has become a powerful paradigm for large scale problem-solving especially for tasks that are difficult for computers but easy for human, we consider the problem of academic knowledge discovery and acquisition as a crowd- sourced database problem and show a hybrid framework to integrate the accuracy of crowdsourcing workers and the speed of automatic algorithms. In this paper, we introduce our current system implementation, a platform for academic knowledge discovery and acquisition (PANDA), as well as some interesting observations and promising future directions.Peer reviewe

Algorithms for XML stream processing : massive data, external memory and scalable performance

Many modern applications require processing of massive streams of XML data, creating difficult technical challenges. Among these, there is the design and implementation of applications to optimize the processing of XPath queries and to provide an accurate cost estimation for these queries processed on a massive steam of XML data. In this thesis, we propose a novel performance prediction model which a priori estimates the cost (in terms of space used and time spent) for any structural query belonging to Forward XPath. In doing so, we perform an experimental study to confirm the linear relationship between stream-processing and data-access resources. Therefore, we introduce a mathematical model (linear regression functions) to predict the cost for a given XPath query. Moreover, we introduce a new selectivity estimation technique. It consists of two elements. The first one is the path tree structure synopsis: a concise, accurate, and convenient summary of the structure of an XML document. The second one is the selectivity estimation algorithm: an efficient streamquerying algorithm to traverse the path tree synopsis for estimating the values of cost-parameters. Those parameters are used by the mathematical model to determine the cost of a given XPath query. We compare the performance of our model with existing approaches. Furthermore, we present a use case for an online stream-querying system. The system uses our performance predicate model to estimate the cost for a given XPath query in terms of time/memory. Moreover, it provides an accurate answer for the query's sender. This use case illustrates the practical advantages of performance management with our techniques.Plusieurs applications modernes nécessitent un traitement de flux massifs de données XML, cela crée de défis techniques. Parmi ces derniers, il y a la conception et la mise en ouvre d'outils pour optimiser le traitement des requêtes XPath et fournir une estimation précise des coûts de ces requêtes traitées sur un flux massif de données XML. Dans cette thèse, nous proposons un nouveau modèle de prédiction de performance qui estime a priori le coût (en termes d'espace utilisé et de temps écoulé) pour les requêtes structurelles de Forward XPath. Ce faisant, nous réalisons une étude expérimentale pour confirmer la relation linéaire entre le traitement de flux, et les ressources d'accès aux données. Par conséquent, nous présentons un modèle mathématique (fonctions de régression linéaire) pour prévoir le coût d'une requête XPath donnée. En outre, nous présentons une technique nouvelle d'estimation de sélectivité. Elle se compose de deux éléments. Le premier est le résumé path tree: une présentation concise et précise de la structure d'un document XML. Le second est l'algorithme d'estimation de sélectivité: un algorithme efficace de flux pour traverser le synopsis path tree pour estimer les valeurs des paramètres de coût. Ces paramètres sont utilisés par le modèle mathématique pour déterminer le coût d'une requête XPath donnée. Nous comparons les performances de notre modèle avec les approches existantes. De plus, nous présentons un cas d'utilisation d'un système en ligne appelé "online stream-querying system". Le système utilise notre modèle de prédiction de performance pour estimer le coût (en termes de temps / mémoire) d'une requête XPath donnée. En outre, il fournit une réponse précise à l'auteur de la requête. Ce cas d'utilisation illustre les avantages pratiques de gestion de performance avec nos technique