Vessel tractography using an intensity based tensor model

In this paper, we propose a novel tubular structure segmen- tation method, which is based on an intensity-based tensor that fits to a vessel. Our model is initialized with a single seed point and it is ca- pable of capturing whole vessel tree by an automatic branch detection algorithm. The centerline of the vessel as well as its thickness is extracted. We demonstrated the performance of our algorithm on 3 complex contrast varying tubular structured synthetic datasets for quantitative validation. Additionally, extracted arteries from 10 CTA (Computed Tomography An- giography) volumes are qualitatively evaluated by a cardiologist expert’s visual scores

3D Geometric Analysis of Tubular Objects based on Surface Normal Accumulation

This paper proposes a simple and efficient method for the reconstruction and extraction of geometric parameters from 3D tubular objects. Our method constructs an image that accumulates surface normal information, then peaks within this image are located by tracking. Finally, the positions of these are optimized to lie precisely on the tubular shape centerline. This method is very versatile, and is able to process various input data types like full or partial mesh acquired from 3D laser scans, 3D height map or discrete volumetric images. The proposed algorithm is simple to implement, contains few parameters and can be computed in linear time with respect to the number of surface faces. Since the extracted tube centerline is accurate, we are able to decompose the tube into rectilinear parts and torus-like parts. This is done with a new linear time 3D torus detection algorithm, which follows the same principle of a previous work on 2D arc circle recognition. Detailed experiments show the versatility, accuracy and robustness of our new method.Comment: in 18th International Conference on Image Analysis and Processing, Sep 2015, Genova, Italy. 201

Soft tissue structure modelling for use in orthopaedic applications and musculoskeletal biomechanics

We present our methodology for the three-dimensional anatomical and geometrical description of soft tissues, relevant for orthopaedic surgical applications and musculoskeletal biomechanics. The technique involves the segmentation and geometrical description of muscles and neurovascular structures from high-resolution computer tomography scanning for the reconstruction of generic anatomical models. These models can be used for quantitative interpretation of anatomical and biomechanical aspects of different soft tissue structures. This approach should allow the use of these data in other application fields, such as musculoskeletal modelling, simulations for radiation therapy, and databases for use in minimally invasive, navigated and robotic surgery

Retinal vessel segmentation using multi-scale wavelet frame analysis

Fundus imaging is a non-invasive technique for in vivo ophthalmoscopic inspection of retinal disorders. Quantitative information about the vascular network can facilitate clinical diagnosis of retinal diseases [1]. Goal: Segmentation of the vascular network in fundus images for further quantification and post processing as a binary classification into object and background. Approach: We perform an over-complete multi-scale wavelet frame expansion with selective channel rejection in the decomposition tree. Remaining channels undergo wavelet shrinkage and enhancement to separate retinal objects from background. Results: Comparison to expert gradings on a pixel by pixel basis show mean sensitivity and specificity of 0.8 and 0.9

Image Segmentation and Classification of Marine Organisms

To automate the arduous task of identifying and classifying images through their domain expertise, pioneers in the field of machine learning and computer vision invented many algorithms and pre-processing techniques. The process of classification is flexible with many user and domain specific alterations. These techniques are now being used to classify marine organisms to study and monitor their populations. Despite advancements in the field of programming languages and machine learning, image segmentation and classification for unlabeled data still needs improvement. The purpose of this project is to explore the various pre-processing techniques and classification algorithms that help cluster and classify images and hence choose the best parameters for identifying the various marine species present in an image

A Review on Vessel Extraction of Fundus Image to Detect Diabetic Retinopathy

Ophthalmology is an important term of medical field, which helps to visualize various diseases and treat them accordingly. Fundus images are processed so as to treat diseases like glaucoma, vein occlusions, and diabetic retinopathy (DR), obesity, glaucoma etc. There are types of supervised and unsupervised types of algorithms used so as to segment the Fundus images. There are three types of datasets available DRIVE, STARE and CHASE_DB1. These data sets are being segmented with the help of Laplace operator. This method makes preprocessing of images by using adaptive histogram equalization by CLAHE algorithm. The first step is to extract green channel and segment this image by using Laplace operator. Thus it helps to enhance extraction of blood vessels from fundus image. The detected blood vessels and measurement of these vessel is used for diagnosis of Diabetic Retinopathy (DR) and other eye diseases

Coronary Artery Tracking in 3D Cardiac CT Images Using Local Morphological Reconstruction Operators

Automatic segmentation and tracking of the coronary artery tree from Cardiac Multislice-CT images is an important goal to improve the diagnosis and treatment of coronary artery disease. This paper presents a semi-automatic algorithm (one input point per vessel) based on morphological grayscale local reconstructions in 3D images devoted to the extraction of the coronary artery tree. The algorithm has been evaluated in the framework of the Coronary Artery Tracking Challenge 2008 [1], obtaining consistent results in overlapping measurements (a mean of 70% of the vessel well tracked). Poor results in accuracy measurements suggest that future work should refine the centerline extraction. The algorithm can be efficiently implemented and its general strategy can be easily extrapolated to a completely automated centerline extraction or to a user interactive vessel extractio

Robust semi-automated path extraction for visualising stenosis of the coronary arteries

Computed tomography angiography (CTA) is useful for diagnosing and planning treatment of heart disease. However, contrast agent in surrounding structures (such as the aorta and left ventricle) makes 3-D visualisation of the coronary arteries difficult. This paper presents a composite method employing segmentation and volume rendering to overcome this issue. A key contribution is a novel Fast Marching minimal path cost function for vessel centreline extraction. The resultant centreline is used to compute a measure of vessel lumen, which indicates the degree of stenosis (narrowing of a vessel). Two volume visualisation techniques are presented which utilise the segmented arteries and lumen measure. The system is evaluated and demonstrated using synthetic and clinically obtained datasets